Protein–RNA interactions for Protein: P48380

RFX3, Transcription factor RFX3, humanhuman

Predictions only

Length 749 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RFX3P48380 CARMIL3-201ENST00000342740 4597 ntAPPRIS P1 TSL 5 BASIC15.7■□□□□ 0.1
RFX3P48380 AL139300.1-201ENST00000472726 2505 ntAPPRIS P1 TSL 2 BASIC15.7■□□□□ 0.1
RFX3P48380 IL12RB2-205ENST00000541374 3849 ntTSL 1 (best) BASIC15.7■□□□□ 0.1
RFX3P48380 LMF1-201ENST00000262301 2621 ntAPPRIS P1 TSL 5 BASIC15.7■□□□□ 0.1
RFX3P48380 DYSF-201ENST00000258104 6796 ntAPPRIS P3 TSL 1 (best) BASIC15.7■□□□□ 0.1
RFX3P48380 DYSF-204ENST00000409582 6790 ntAPPRIS ALT2 TSL 1 (best) BASIC15.7■□□□□ 0.1
RFX3P48380 DYSF-210ENST00000413539 6769 ntAPPRIS ALT2 TSL 1 (best) BASIC15.7■□□□□ 0.1
RFX3P48380 IL34-202ENST00000429149 1779 ntAPPRIS P2 TSL 5 BASIC15.7■□□□□ 0.1
RFX3P48380 RTN1-201ENST00000267484 3435 ntAPPRIS P4 TSL 1 (best) BASIC15.7■□□□□ 0.1
RFX3P48380 ACSM2A-213ENST00000575690 2322 ntAPPRIS P1 TSL 2 BASIC15.7■□□□□ 0.1
RFX3P48380 TTLL5-219ENST00000556977 1961 ntTSL 1 (best) BASIC15.7■□□□□ 0.1
RFX3P48380 CR392000.2-201ENST00000640235 1994 ntTSL 2 BASIC15.7■□□□□ 0.1
RFX3P48380 PTH2-201ENST00000270631 459 ntAPPRIS P1 TSL 1 (best) BASIC15.7■□□□□ 0.1
RFX3P48380 EXOSC4-201ENST00000316052 887 ntAPPRIS P1 TSL 1 (best) BASIC15.7■□□□□ 0.1
RFX3P48380 MAGI2-AS3-208ENST00000446159 670 ntTSL 3 BASIC15.7■□□□□ 0.1
RFX3P48380 CNOT8-225ENST00000524105 904 ntTSL 2 BASIC15.7■□□□□ 0.1
RFX3P48380 AL662844.1-201ENST00000546340 181 ntBASIC15.7■□□□□ 0.1
RFX3P48380 ADAM10-217ENST00000561288 583 ntTSL 3 BASIC15.7■□□□□ 0.1
RFX3P48380 YPEL3-209ENST00000566595 796 ntAPPRIS P1 TSL 2 BASIC15.7■□□□□ 0.1
RFX3P48380 PRSS8-206ENST00000568261 1214 ntTSL 2 BASIC15.7■□□□□ 0.1
RFX3P48380 SLC25A6P4-201ENST00000586535 553 ntBASIC15.7■□□□□ 0.1
RFX3P48380 AC243547.2-201ENST00000616257 234 ntTSL 3 BASIC15.7■□□□□ 0.1
RFX3P48380 CDK2AP1-207ENST00000618072 1144 ntTSL 3 BASIC15.7■□□□□ 0.1
RFX3P48380 AC117500.6-201ENST00000624871 588 ntBASIC15.7■□□□□ 0.1
RFX3P48380 FAM238C-204ENST00000640224 1268 ntTSL 5 BASIC15.7■□□□□ 0.1
RFX3P48380 DENR-201ENST00000280557 2769 ntAPPRIS P1 TSL 1 (best) BASIC15.7■□□□□ 0.1
RFX3P48380 AL162727.3-201ENST00000635661 2787 ntBASIC15.7■□□□□ 0.1
RFX3P48380 EVPLL-201ENST00000399134 2095 ntAPPRIS P1 TSL 1 (best) BASIC15.7■□□□□ 0.1
RFX3P48380 PEX10-201ENST00000288774 2871 ntTSL 1 (best) BASIC15.7■□□□□ 0.1
RFX3P48380 DACH1-203ENST00000619232 2986 ntAPPRIS ALT2 TSL 5 BASIC15.7■□□□□ 0.1
RFX3P48380 PUF60-201ENST00000313352 1804 ntAPPRIS ALT1 TSL 1 (best) BASIC15.7■□□□□ 0.1
RFX3P48380 FAM208A-201ENST00000355628 5239 ntAPPRIS ALT2 TSL 1 (best) BASIC15.7■□□□□ 0.1
RFX3P48380 PHGDH-223ENST00000641597 2585 ntAPPRIS P1 BASIC15.7■□□□□ 0.1
RFX3P48380 NFATC4-204ENST00000424781 5488 ntAPPRIS ALT2 TSL 1 (best) BASIC15.7■□□□□ 0.1
RFX3P48380 SRSF12-201ENST00000452027 3599 ntAPPRIS P1 TSL 1 (best) BASIC15.7■□□□□ 0.1
RFX3P48380 TCP11L2-201ENST00000299045 2219 ntAPPRIS P1 TSL 1 (best) BASIC15.7■□□□□ 0.1
RFX3P48380 ZFYVE19-203ENST00000355341 2775 ntAPPRIS P3 TSL 1 (best) BASIC15.7■□□□□ 0.1
RFX3P48380 SSFA2-205ENST00000431877 5150 ntAPPRIS ALT2 TSL 1 (best) BASIC15.69■□□□□ 0.1
RFX3P48380 TXNDC11-202ENST00000356957 3178 ntAPPRIS ALT2 TSL 1 (best) BASIC15.69■□□□□ 0.1
RFX3P48380 ZBTB9-201ENST00000395064 2716 ntAPPRIS P1 TSL 1 (best) BASIC15.69■□□□□ 0.1
RFX3P48380 SLC29A1-202ENST00000371713 2168 ntAPPRIS P1 TSL 5 BASIC15.69■□□□□ 0.1
RFX3P48380 SLC5A2-201ENST00000330498 2271 ntAPPRIS P1 TSL 1 (best) BASIC15.69■□□□□ 0.1
RFX3P48380 BSG-203ENST00000353555 1616 ntTSL 1 (best) BASIC15.69■□□□□ 0.1
RFX3P48380 KCNJ8-201ENST00000240662 2389 ntAPPRIS P1 TSL 1 (best) BASIC15.69■□□□□ 0.1
RFX3P48380 ZNF385A-212ENST00000551109 2369 ntTSL 5 BASIC15.69■□□□□ 0.1
RFX3P48380 AC010478.1-202ENST00000559112 2367 ntTSL 2 BASIC15.69■□□□□ 0.1
RFX3P48380 GATA6-201ENST00000269216 3770 ntAPPRIS P1 TSL 1 (best) BASIC15.69■□□□□ 0.1
RFX3P48380 EIF4A3-201ENST00000269349 1734 ntAPPRIS P1 TSL 1 (best) BASIC15.69■□□□□ 0.1
RFX3P48380 LMNA-202ENST00000361308 1713 ntTSL 5 BASIC15.69■□□□□ 0.1
RFX3P48380 PPOX-202ENST00000367999 1740 ntAPPRIS P1 TSL 1 (best) BASIC15.69■□□□□ 0.1
RFX3P48380 SLC39A8-201ENST00000356736 3144 ntAPPRIS P1 TSL 1 (best) BASIC15.69■□□□□ 0.1
RFX3P48380 HNF1A-216ENST00000617366 2473 ntTSL 1 (best) BASIC15.69■□□□□ 0.1
RFX3P48380 FYTTD1-201ENST00000241502 6866 ntAPPRIS P1 TSL 1 (best) BASIC15.69■□□□□ 0.1
RFX3P48380 PNKD-202ENST00000258362 2991 ntAPPRIS ALT2 TSL 1 (best) BASIC15.69■□□□□ 0.1
RFX3P48380 AL021453.1-201ENST00000333487 2989 ntTSL 2 BASIC15.69■□□□□ 0.1
RFX3P48380 TSTD1-204ENST00000423014 593 ntAPPRIS ALT2 TSL 2 BASIC15.69■□□□□ 0.1
RFX3P48380 AC098831.1-202ENST00000438821 336 ntBASIC15.69■□□□□ 0.1
RFX3P48380 SLFNL1-205ENST00000439569 2117 ntAPPRIS P3 TSL 2 BASIC15.69■□□□□ 0.1
RFX3P48380 ABHD18-203ENST00000444616 2129 ntAPPRIS P1 TSL 5 BASIC15.69■□□□□ 0.1
RFX3P48380 NDUFB2-209ENST00000472695 503 ntTSL 5 BASIC15.69■□□□□ 0.1
RFX3P48380 PENK-208ENST00000523051 772 ntTSL 5 BASIC15.69■□□□□ 0.1
RFX3P48380 UBE2Q2P1-205ENST00000559871 534 ntTSL 5 BASIC15.69■□□□□ 0.1
RFX3P48380 MIR4751-201ENST00000578027 74 ntBASIC15.69■□□□□ 0.1
RFX3P48380 TNFRSF13B-206ENST00000583789 859 ntTSL 1 (best) BASIC15.69■□□□□ 0.1
RFX3P48380 TMEM178A-206ENST00000618232 1286 ntTSL 5 BASIC15.69■□□□□ 0.1
RFX3P48380 AC116407.3-201ENST00000623905 1129 ntBASIC15.69■□□□□ 0.1
RFX3P48380 TMEM177-201ENST00000272521 1394 ntAPPRIS P1 TSL 1 (best) BASIC15.69■□□□□ 0.1
RFX3P48380 FOXP3-206ENST00000557224 1371 ntTSL 2 BASIC15.69■□□□□ 0.1
RFX3P48380 IGFBP5-201ENST00000233813 6215 ntAPPRIS P1 TSL 1 (best) BASIC15.69■□□□□ 0.1
RFX3P48380 CSNK1A1L-201ENST00000379800 2406 ntAPPRIS P1 BASIC15.69■□□□□ 0.1
RFX3P48380 GCAT-201ENST00000248924 1497 ntAPPRIS P1 TSL 1 (best) BASIC15.69■□□□□ 0.1
RFX3P48380 AC083864.1-201ENST00000381493 1497 ntTSL 1 (best) BASIC15.69■□□□□ 0.1
RFX3P48380 KCNK7-203ENST00000394216 1563 ntTSL 1 (best) BASIC15.69■□□□□ 0.1
RFX3P48380 LCOR-202ENST00000356016 4834 ntAPPRIS P3 TSL 2 BASIC15.69■□□□□ 0.1
RFX3P48380 PDCD5-203ENST00000419343 1799 ntTSL 2 BASIC15.69■□□□□ 0.1
RFX3P48380 RDH13-202ENST00000396247 1987 ntTSL 1 (best) BASIC15.69■□□□□ 0.1
RFX3P48380 AL162586.1-201ENST00000439298 2055 ntTSL 2 BASIC15.69■□□□□ 0.1
RFX3P48380 CTSL-203ENST00000343150 2177 ntAPPRIS P1 TSL 1 (best) BASIC15.69■□□□□ 0.1
RFX3P48380 RGN-203ENST00000397180 2257 ntAPPRIS P1 TSL 5 BASIC15.69■□□□□ 0.1
RFX3P48380 CORO6-202ENST00000388767 2397 ntAPPRIS P2 TSL 2 BASIC15.69■□□□□ 0.1
RFX3P48380 INPP5J-202ENST00000400294 2393 ntTSL 2 BASIC15.69■□□□□ 0.1
RFX3P48380 WASHC2C-208ENST00000537517 4417 ntAPPRIS ALT2 TSL 2 BASIC15.69■□□□□ 0.1
RFX3P48380 COBL-203ENST00000395542 5339 ntTSL 1 (best) BASIC15.69■□□□□ 0.1
RFX3P48380 ZCCHC3-201ENST00000500893 3354 ntAPPRIS P1 BASIC15.69■□□□□ 0.1
RFX3P48380 MUTYH-201ENST00000354383 1744 ntAPPRIS P4 TSL 1 (best) BASIC15.68■□□□□ 0.1
RFX3P48380 SMTNL2-201ENST00000338859 1919 ntTSL 1 (best) BASIC15.68■□□□□ 0.1
RFX3P48380 MPP1-202ENST00000369534 2042 ntAPPRIS P1 TSL 1 (best) BASIC15.68■□□□□ 0.1
RFX3P48380 PCNP-201ENST00000265260 2342 ntAPPRIS P1 TSL 1 (best) BASIC15.68■□□□□ 0.1
RFX3P48380 GALNT18-201ENST00000227756 2504 ntAPPRIS P1 TSL 1 (best) BASIC15.68■□□□□ 0.1
RFX3P48380 CYB561D1-205ENST00000430195 5077 ntTSL 2 BASIC15.68■□□□□ 0.1
RFX3P48380 TTC24-202ENST00000368237 1969 ntAPPRIS P1 TSL 5 BASIC15.68■□□□□ 0.1
RFX3P48380 CRELD1-206ENST00000452070 1778 ntAPPRIS P1 TSL 2 BASIC15.68■□□□□ 0.1
RFX3P48380 RHBG-204ENST00000537040 1789 ntAPPRIS P1 TSL 1 (best) BASIC15.68■□□□□ 0.1
RFX3P48380 APLNR-203ENST00000611099 1789 ntAPPRIS P1 TSL 1 (best) BASIC15.68■□□□□ 0.1
RFX3P48380 PRRT2-205ENST00000567659 1470 ntTSL 2 BASIC15.68■□□□□ 0.1
RFX3P48380 HFE2-204ENST00000475797 1381 ntTSL 2 BASIC15.68■□□□□ 0.1
RFX3P48380 TFF3-201ENST00000291525 407 ntAPPRIS ALT2 TSL 5 BASIC15.68■□□□□ 0.1
RFX3P48380 AQP12A-201ENST00000337801 1084 ntAPPRIS ALT2 TSL 1 (best) BASIC15.68■□□□□ 0.1
RFX3P48380 MSANTD3-201ENST00000374885 786 ntTSL 2 BASIC15.68■□□□□ 0.1
RFX3P48380 CSF3-203ENST00000394148 622 ntTSL 3 BASIC15.68■□□□□ 0.1
Retrieved 100 of 98,524 protein–RNA pairs in 29.6 ms