Protein–RNA interactions for Protein: P35548

MSX2, Homeobox protein MSX-2, humanhuman

Predicted RBP Predictions only

Length 267 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSX2P35548 SLC29A2-207ENST00000619145 2380 ntTSL 5 BASIC15.95■□□□□ 0.14
MSX2P35548 HNRNPUL1-220ENST00000602130 2932 ntAPPRIS ALT2 TSL 1 (best) BASIC15.95■□□□□ 0.14
MSX2P35548 LHCGR-203ENST00000403273 1921 ntTSL 5 BASIC15.95■□□□□ 0.14
MSX2P35548 AKR1A1-214ENST00000621846 1360 ntAPPRIS P1 TSL 5 BASIC15.95■□□□□ 0.14
MSX2P35548 AL021920.2-201ENST00000624828 1351 ntBASIC15.95■□□□□ 0.14
MSX2P35548 ARHGAP9-203ENST00000424809 2569 ntTSL 2 BASIC15.95■□□□□ 0.14
MSX2P35548 CRLS1-203ENST00000452938 3859 ntTSL 1 (best) BASIC15.95■□□□□ 0.14
MSX2P35548 TTC22-202ENST00000371276 3345 ntAPPRIS P1 TSL 5 BASIC15.95■□□□□ 0.14
MSX2P35548 PHF14-215ENST00000634607 3407 ntAPPRIS P1 TSL 5 BASIC15.95■□□□□ 0.14
MSX2P35548 ALDH3A1-212ENST00000494157 1572 ntTSL 3 BASIC15.95■□□□□ 0.14
MSX2P35548 C1RL-210ENST00000544702 1569 ntTSL 1 (best) BASIC15.95■□□□□ 0.14
MSX2P35548 BID-213ENST00000615414 2236 ntTSL 5 BASIC15.95■□□□□ 0.14
MSX2P35548 DNM1-201ENST00000341179 3254 ntAPPRIS ALT1 TSL 1 (best) BASIC15.95■□□□□ 0.14
MSX2P35548 DDX1-202ENST00000381341 2817 ntAPPRIS P1 TSL 5 BASIC15.95■□□□□ 0.14
MSX2P35548 SYNE3-203ENST00000554873 2826 ntTSL 5 BASIC15.95■□□□□ 0.14
MSX2P35548 EIF4A1-203ENST00000577269 1319 ntTSL 1 (best) BASIC15.94■□□□□ 0.14
MSX2P35548 PPT1-215ENST00000641471 2368 ntBASIC15.94■□□□□ 0.14
MSX2P35548 DBNL-213ENST00000452943 1513 ntTSL 2 BASIC15.94■□□□□ 0.14
MSX2P35548 KRT82-201ENST00000257974 2664 ntAPPRIS P1 TSL 1 (best) BASIC15.94■□□□□ 0.14
MSX2P35548 BSG-202ENST00000346916 1605 ntTSL 1 (best) BASIC15.94■□□□□ 0.14
MSX2P35548 CACFD1-207ENST00000542192 2754 ntTSL 2 BASIC15.94■□□□□ 0.14
MSX2P35548 HSP90B1-201ENST00000299767 2858 ntAPPRIS P1 TSL 1 (best) BASIC15.94■□□□□ 0.14
MSX2P35548 XK-201ENST00000378616 5206 ntAPPRIS P1 TSL 1 (best) BASIC15.94■□□□□ 0.14
MSX2P35548 ZNF496-201ENST00000294753 5336 ntAPPRIS P1 TSL 1 (best) BASIC15.94■□□□□ 0.14
MSX2P35548 ACBD5-202ENST00000375897 4173 ntAPPRIS ALT2 TSL 2 BASIC15.94■□□□□ 0.14
MSX2P35548 GARS-201ENST00000389266 2634 ntAPPRIS P1 TSL 1 (best) BASIC15.94■□□□□ 0.14
MSX2P35548 NUP88-207ENST00000573584 2916 ntAPPRIS P1 TSL 1 (best) BASIC15.94■□□□□ 0.14
MSX2P35548 MTRF1L-201ENST00000367230 3431 ntTSL 1 (best) BASIC15.94■□□□□ 0.14
MSX2P35548 RALGDS-202ENST00000372050 3634 ntAPPRIS P3 TSL 1 (best) BASIC15.94■□□□□ 0.14
MSX2P35548 FGF8-202ENST00000344255 707 ntTSL 1 (best) BASIC15.94■□□□□ 0.14
MSX2P35548 UBE2J2-204ENST00000400929 1057 ntTSL 3 BASIC15.94■□□□□ 0.14
MSX2P35548 IMP3-202ENST00000403490 1237 ntAPPRIS P1 BASIC15.94■□□□□ 0.14
MSX2P35548 DGUOK-AS1-203ENST00000453103 601 ntTSL 3 BASIC15.94■□□□□ 0.14
MSX2P35548 RARRES1-204ENST00000479756 839 ntTSL 1 (best) BASIC15.94■□□□□ 0.14
MSX2P35548 CD320-202ENST00000537716 1119 ntTSL 2 BASIC15.94■□□□□ 0.14
MSX2P35548 AC011498.2-201ENST00000588798 540 ntTSL 3 BASIC15.94■□□□□ 0.14
MSX2P35548 AD001527.2-201ENST00000622994 785 ntBASIC15.94■□□□□ 0.14
MSX2P35548 AC073592.5-201ENST00000624854 528 ntBASIC15.94■□□□□ 0.14
MSX2P35548 RAD51D-201ENST00000335858 1353 ntTSL 1 (best) BASIC15.94■□□□□ 0.14
MSX2P35548 PORCN-205ENST00000367574 1368 ntAPPRIS ALT1 TSL 1 (best) BASIC15.94■□□□□ 0.14
MSX2P35548 PORCN-214ENST00000537758 1371 ntAPPRIS ALT1 TSL 1 (best) BASIC15.94■□□□□ 0.14
MSX2P35548 CTNND2-214ENST00000511377 4336 ntTSL 1 (best) BASIC15.94■□□□□ 0.14
MSX2P35548 NFATC4-223ENST00000555802 1476 ntTSL 1 (best) BASIC15.94■□□□□ 0.14
MSX2P35548 MRPS5-201ENST00000272418 1652 ntAPPRIS P1 TSL 1 (best) BASIC15.94■□□□□ 0.14
MSX2P35548 LRRC61-201ENST00000323078 1684 ntAPPRIS P1 TSL 1 (best) BASIC15.94■□□□□ 0.14
MSX2P35548 ACP5-212ENST00000592828 1699 ntAPPRIS P1 TSL 5 BASIC15.94■□□□□ 0.14
MSX2P35548 REXO1L8P-201ENST00000604378 1897 ntBASIC15.94■□□□□ 0.14
MSX2P35548 STXBP5-207ENST00000546097 2160 ntTSL 1 (best) BASIC15.94■□□□□ 0.14
MSX2P35548 TLE4-204ENST00000376537 2793 ntTSL 1 (best) BASIC15.94■□□□□ 0.14
MSX2P35548 PPP1R37-201ENST00000221462 3163 ntAPPRIS P1 TSL 5 BASIC15.94■□□□□ 0.14
MSX2P35548 FEM1C-201ENST00000274457 5816 ntAPPRIS P1 TSL 1 (best) BASIC15.94■□□□□ 0.14
MSX2P35548 ZNF219-202ENST00000421093 2908 ntAPPRIS P1 TSL 1 (best) BASIC15.94■□□□□ 0.14
MSX2P35548 AC022613.1-201ENST00000536835 2530 ntTSL 1 (best) BASIC15.94■□□□□ 0.14
MSX2P35548 OSBPL6-203ENST00000357080 2217 ntTSL 1 (best) BASIC15.94■□□□□ 0.14
MSX2P35548 AL355315.1-201ENST00000370649 1848 ntAPPRIS P1 TSL 2 BASIC15.94■□□□□ 0.14
MSX2P35548 SEPT8-208ENST00000378721 1723 ntTSL 5 BASIC15.94■□□□□ 0.14
MSX2P35548 AC006277.1-201ENST00000624348 1610 ntBASIC15.94■□□□□ 0.14
MSX2P35548 TYMS-201ENST00000323224 1327 ntTSL 1 (best) BASIC15.94■□□□□ 0.14
MSX2P35548 EPHB4-201ENST00000358173 4329 ntAPPRIS P1 TSL 1 (best) BASIC15.93■□□□□ 0.14
MSX2P35548 NUP58-201ENST00000381718 2489 ntAPPRIS ALT1 TSL 2 BASIC15.93■□□□□ 0.14
MSX2P35548 ZNF197-203ENST00000383744 1989 ntTSL 1 (best) BASIC15.93■□□□□ 0.14
MSX2P35548 GFAP-203ENST00000435360 1779 ntTSL 2 BASIC15.93■□□□□ 0.14
MSX2P35548 AQP1-201ENST00000311813 2913 ntAPPRIS P1 TSL 1 (best) BASIC15.93■□□□□ 0.14
MSX2P35548 TPO-203ENST00000346956 2923 ntTSL 5 BASIC15.93■□□□□ 0.14
MSX2P35548 AL928970.1-201ENST00000422679 2923 ntTSL 5 BASIC15.93■□□□□ 0.14
MSX2P35548 ALDH1A2-201ENST00000249750 4098 ntAPPRIS P1 TSL 1 (best) BASIC15.93■□□□□ 0.14
MSX2P35548 KLK3-201ENST00000326003 1463 ntAPPRIS P1 TSL 1 (best) BASIC15.93■□□□□ 0.14
MSX2P35548 SYT17-201ENST00000355377 3081 ntAPPRIS P3 TSL 1 (best) BASIC15.93■□□□□ 0.14
MSX2P35548 RPS12-201ENST00000230050 631 ntAPPRIS P1 TSL 1 (best) BASIC15.93■□□□□ 0.14
MSX2P35548 BAALC-202ENST00000306391 243 ntTSL 5 BASIC15.93■□□□□ 0.14
MSX2P35548 BAALC-204ENST00000330955 222 ntTSL 5 BASIC15.93■□□□□ 0.14
MSX2P35548 ROMO1-204ENST00000374078 498 ntAPPRIS P1 TSL 1 (best) BASIC15.93■□□□□ 0.14
MSX2P35548 SCO2-202ENST00000395693 992 ntAPPRIS P1 TSL 1 (best) BASIC15.93■□□□□ 0.14
MSX2P35548 NUS1P1-201ENST00000446295 882 ntBASIC15.93■□□□□ 0.14
MSX2P35548 LY6L-201ENST00000562505 988 ntAPPRIS P1 TSL 5 BASIC15.93■□□□□ 0.14
MSX2P35548 YPEL3-207ENST00000566134 761 ntTSL 5 BASIC15.93■□□□□ 0.14
MSX2P35548 AC145285.6-201ENST00000604632 637 ntBASIC15.93■□□□□ 0.14
MSX2P35548 AL353801.3-201ENST00000609898 542 ntBASIC15.93■□□□□ 0.14
MSX2P35548 AL592071.1-201ENST00000611956 408 ntBASIC15.93■□□□□ 0.14
MSX2P35548 AL590627.2-201ENST00000637510 144 ntTSL 5 BASIC15.93■□□□□ 0.14
MSX2P35548 KLHL42-201ENST00000381271 6703 ntAPPRIS P1 TSL 1 (best) BASIC15.93■□□□□ 0.14
MSX2P35548 SERF2-203ENST00000381359 1931 ntAPPRIS P1 TSL 1 (best) BASIC15.93■□□□□ 0.14
MSX2P35548 AC139530.2-201ENST00000571730 1922 ntAPPRIS P1 TSL 2 BASIC15.93■□□□□ 0.14
MSX2P35548 DNAJC10-210ENST00000616986 5783 ntTSL 1 (best) BASIC15.93■□□□□ 0.14
MSX2P35548 LMF2-201ENST00000216080 2658 ntTSL 2 BASIC15.93■□□□□ 0.14
MSX2P35548 RUFY2-204ENST00000399200 2685 ntTSL 1 (best) BASIC15.93■□□□□ 0.14
MSX2P35548 AC018716.2-201ENST00000528390 2597 ntTSL 2 BASIC15.93■□□□□ 0.14
MSX2P35548 LINC01657-201ENST00000457217 1809 ntTSL 1 (best) BASIC15.93■□□□□ 0.14
MSX2P35548 FBXL12-206ENST00000588922 1843 ntTSL 2 BASIC15.93■□□□□ 0.14
MSX2P35548 ABLIM2-202ENST00000361581 2472 ntAPPRIS ALT2 TSL 1 (best) BASIC15.93■□□□□ 0.14
MSX2P35548 RGPD5-202ENST00000272454 2907 ntTSL 2 BASIC15.93■□□□□ 0.14
MSX2P35548 EIF2B4-206ENST00000451130 1633 ntTSL 1 (best) BASIC15.93■□□□□ 0.14
MSX2P35548 AC148477.5-201ENST00000625164 1645 ntBASIC15.93■□□□□ 0.14
MSX2P35548 MAP4K1-210ENST00000591517 2700 ntTSL 1 (best) BASIC15.93■□□□□ 0.14
MSX2P35548 SLC39A1-202ENST00000356205 2084 ntAPPRIS P1 TSL 1 (best) BASIC15.93■□□□□ 0.14
MSX2P35548 CRADD-202ENST00000542893 1403 ntAPPRIS P1 TSL 1 (best) BASIC15.93■□□□□ 0.14
MSX2P35548 CTCFL-215ENST00000608158 1984 ntTSL 1 (best) BASIC15.93■□□□□ 0.14
MSX2P35548 CLEC18A-203ENST00000449317 1875 ntAPPRIS ALT2 TSL 5 BASIC15.93■□□□□ 0.14
MSX2P35548 PKD2L2-205ENST00000508638 2333 ntTSL 1 (best) BASIC15.93■□□□□ 0.14
MSX2P35548 TMEM155-202ENST00000394394 1753 ntAPPRIS P2 TSL 3 BASIC15.92■□□□□ 0.14
Retrieved 100 of 98,524 protein–RNA pairs in 37.5 ms