Protein–RNA interactions for Protein: P29400

COL4A5, Collagen alpha-5(IV) chain, humanhuman

Predictions only

Length 1,685 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A5P29400 CAPZB-204ENST00000375144 1568 ntTSL 1 (best) BASIC19.61■□□□□ 0.73
COL4A5P29400 DUSP14-204ENST00000613659 1559 ntAPPRIS P1 TSL 2 BASIC19.61■□□□□ 0.73
COL4A5P29400 QRFP-202ENST00000623824 1658 ntAPPRIS P1 TSL 3 BASIC19.61■□□□□ 0.73
COL4A5P29400 PEPD-202ENST00000397032 1754 ntTSL 2 BASIC19.61■□□□□ 0.73
COL4A5P29400 MFSD2A-202ENST00000372811 2154 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
COL4A5P29400 PP12613-201ENST00000424958 2230 ntBASIC19.61■□□□□ 0.73
COL4A5P29400 COBL-202ENST00000395540 2332 ntTSL 1 (best) BASIC19.61■□□□□ 0.73
COL4A5P29400 ASCC2-223ENST00000542393 2594 ntTSL 2 BASIC19.61■□□□□ 0.73
COL4A5P29400 TMEM98-206ENST00000579849 4434 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
COL4A5P29400 RBM24-202ENST00000379052 2703 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
COL4A5P29400 FLT3LG-201ENST00000204637 1046 ntTSL 1 (best) BASIC19.61■□□□□ 0.73
COL4A5P29400 TAAR5-201ENST00000258034 1014 ntAPPRIS P1 BASIC19.61■□□□□ 0.73
COL4A5P29400 NINJ2-201ENST00000305108 1252 ntAPPRIS P3 TSL 1 (best) BASIC19.61■□□□□ 0.73
COL4A5P29400 SPAG11B-203ENST00000359758 612 ntTSL 1 (best) BASIC19.61■□□□□ 0.73
COL4A5P29400 HAUS4P1-201ENST00000406739 1145 ntBASIC19.61■□□□□ 0.73
COL4A5P29400 AL109741.1-201ENST00000432195 403 ntTSL 2 BASIC19.61■□□□□ 0.73
COL4A5P29400 RN7SL399P-201ENST00000471648 279 ntBASIC19.61■□□□□ 0.73
COL4A5P29400 AC106886.2-201ENST00000483578 883 ntTSL 5 BASIC19.61■□□□□ 0.73
COL4A5P29400 AC008406.2-201ENST00000507058 532 ntTSL 3 BASIC19.61■□□□□ 0.73
COL4A5P29400 AP002748.3-205ENST00000525142 567 ntTSL 3 BASIC19.61■□□□□ 0.73
COL4A5P29400 AP002748.3-203ENST00000533502 581 ntTSL 3 BASIC19.61■□□□□ 0.73
COL4A5P29400 AC011497.1-201ENST00000596781 561 ntTSL 4 BASIC19.61■□□□□ 0.73
COL4A5P29400 RIC8A-217ENST00000626818 159 ntTSL 5 BASIC19.61■□□□□ 0.73
COL4A5P29400 CTSB-219ENST00000530640 1389 ntAPPRIS P1 TSL 5 BASIC19.61■□□□□ 0.73
COL4A5P29400 PTOV1-219ENST00000601638 1413 ntTSL 5 BASIC19.61■□□□□ 0.73
COL4A5P29400 TAGLN3-202ENST00000393917 1488 ntAPPRIS P1 TSL 5 BASIC19.61■□□□□ 0.73
COL4A5P29400 SLC6A8-204ENST00000430077 1892 ntTSL 2 BASIC19.61■□□□□ 0.73
COL4A5P29400 TTLL5-219ENST00000556977 1961 ntTSL 1 (best) BASIC19.61■□□□□ 0.73
COL4A5P29400 ARFIP2-201ENST00000254584 2543 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
COL4A5P29400 NOP14-202ENST00000398071 2535 ntAPPRIS ALT2 TSL 1 (best) BASIC19.61■□□□□ 0.73
COL4A5P29400 RIC8A-208ENST00000527696 2565 ntTSL 1 (best) BASIC19.61■□□□□ 0.73
COL4A5P29400 TNIP1-221ENST00000610874 2629 ntTSL 5 BASIC19.61■□□□□ 0.73
COL4A5P29400 ZNF274-202ENST00000345813 2678 ntAPPRIS ALT2 TSL 1 (best) BASIC19.61■□□□□ 0.73
COL4A5P29400 CSPG5-201ENST00000264723 4080 ntAPPRIS P3 TSL 1 (best) BASIC19.6■□□□□ 0.73
COL4A5P29400 AC120498.9-201ENST00000339021 3867 ntBASIC19.6■□□□□ 0.73
COL4A5P29400 PDE4A-202ENST00000344979 2579 ntTSL 1 (best) BASIC19.6■□□□□ 0.73
COL4A5P29400 CLDN9-201ENST00000445369 2050 ntAPPRIS P1 BASIC19.6■□□□□ 0.73
COL4A5P29400 HMCN2-204ENST00000611173 1920 ntTSL 1 (best) BASIC19.6■□□□□ 0.73
COL4A5P29400 GLMP-213ENST00000612353 1365 ntAPPRIS ALT2 TSL 5 BASIC19.6■□□□□ 0.73
COL4A5P29400 GLMP-215ENST00000622703 1364 ntAPPRIS ALT2 TSL 2 BASIC19.6■□□□□ 0.73
COL4A5P29400 NPY-201ENST00000242152 585 ntAPPRIS P1 TSL 1 (best) BASIC19.6■□□□□ 0.73
COL4A5P29400 LBX2-201ENST00000341396 886 ntTSL 3 BASIC19.6■□□□□ 0.73
COL4A5P29400 NME6-203ENST00000415644 849 ntTSL 2 BASIC19.6■□□□□ 0.73
COL4A5P29400 SNHG11-209ENST00000440918 556 ntTSL 3 BASIC19.6■□□□□ 0.73
COL4A5P29400 KLF2P4-201ENST00000451959 1225 ntBASIC19.6■□□□□ 0.73
COL4A5P29400 LLPH-AS1-201ENST00000510317 623 ntTSL 4 BASIC19.6■□□□□ 0.73
COL4A5P29400 SNHG9-201ENST00000531523 275 ntTSL 1 (best) BASIC19.6■□□□□ 0.73
COL4A5P29400 AP000721.1-201ENST00000535431 559 ntAPPRIS P1 TSL 5 BASIC19.6■□□□□ 0.73
COL4A5P29400 BRI3BPP1-201ENST00000594224 787 ntBASIC19.6■□□□□ 0.73
COL4A5P29400 AC020765.3-201ENST00000613051 740 ntBASIC19.6■□□□□ 0.73
COL4A5P29400 PIGZ-202ENST00000412723 2701 ntAPPRIS P1 TSL 1 (best) BASIC19.6■□□□□ 0.73
COL4A5P29400 SGK3-206ENST00000520976 2483 ntTSL 2 BASIC19.6■□□□□ 0.73
COL4A5P29400 LMNA-205ENST00000368299 2253 ntTSL 1 (best) BASIC19.6■□□□□ 0.73
COL4A5P29400 PCBP1-201ENST00000303577 1750 ntAPPRIS P1 BASIC19.6■□□□□ 0.73
COL4A5P29400 MRS2-202ENST00000378353 1740 ntAPPRIS ALT2 TSL 1 (best) BASIC19.6■□□□□ 0.73
COL4A5P29400 OXCT1-AS1-201ENST00000508458 1731 ntTSL 3 BASIC19.6■□□□□ 0.73
COL4A5P29400 ZNF140-207ENST00000440550 1663 ntTSL 2 BASIC19.6■□□□□ 0.73
COL4A5P29400 ETV7-201ENST00000339796 1530 ntAPPRIS ALT2 TSL 1 (best) BASIC19.6■□□□□ 0.73
COL4A5P29400 KTN1-AS1-201ENST00000335142 1465 ntTSL 1 (best) BASIC19.59■□□□□ 0.73
COL4A5P29400 OXA1L-203ENST00000412791 1440 ntTSL 5 BASIC19.59■□□□□ 0.73
COL4A5P29400 ZNF890P-201ENST00000422060 1352 ntTSL 2 BASIC19.59■□□□□ 0.73
COL4A5P29400 ST6GALNAC6-201ENST00000291839 2280 ntAPPRIS P3 TSL 1 (best) BASIC19.59■□□□□ 0.73
COL4A5P29400 AC006504.5-203ENST00000590628 1335 ntTSL 1 (best) BASIC19.59■□□□□ 0.73
COL4A5P29400 UPK3A-201ENST00000216211 1051 ntAPPRIS P3 TSL 1 (best) BASIC19.59■□□□□ 0.73
COL4A5P29400 NTMT1-202ENST00000372481 741 ntTSL 2 BASIC19.59■□□□□ 0.73
COL4A5P29400 AZGP1P1-201ENST00000411909 902 ntBASIC19.59■□□□□ 0.73
COL4A5P29400 AC074338.1-201ENST00000416825 156 ntBASIC19.59■□□□□ 0.73
COL4A5P29400 AL442647.2-201ENST00000429864 857 ntBASIC19.59■□□□□ 0.73
COL4A5P29400 TAGLN-206ENST00000530649 1227 ntAPPRIS P1 TSL 1 (best) BASIC19.59■□□□□ 0.73
COL4A5P29400 AC124283.3-201ENST00000570869 594 ntBASIC19.59■□□□□ 0.73
COL4A5P29400 AC003070.2-201ENST00000589730 386 ntTSL 3 BASIC19.59■□□□□ 0.73
COL4A5P29400 IMP3-201ENST00000314852 2028 ntAPPRIS P1 TSL 2 BASIC19.59■□□□□ 0.73
COL4A5P29400 AL391256.1-201ENST00000443260 1855 ntBASIC19.59■□□□□ 0.73
COL4A5P29400 GATB-213ENST00000515812 1893 ntTSL 5 BASIC19.59■□□□□ 0.73
COL4A5P29400 TMEM161A-201ENST00000162044 1820 ntAPPRIS P1 TSL 1 (best) BASIC19.59■□□□□ 0.73
COL4A5P29400 TBP-207ENST00000616883 1750 ntAPPRIS ALT2 TSL 5 BASIC19.59■□□□□ 0.73
COL4A5P29400 KCNC2-203ENST00000393288 2485 ntAPPRIS ALT2 TSL 1 (best) BASIC19.59■□□□□ 0.73
COL4A5P29400 FKBP8-201ENST00000222308 1710 ntAPPRIS ALT1 TSL 1 (best) BASIC19.59■□□□□ 0.73
COL4A5P29400 CHRDL1-204ENST00000444321 1658 ntAPPRIS ALT1 TSL 1 (best) BASIC19.59■□□□□ 0.73
COL4A5P29400 CMTM4-201ENST00000330687 3414 ntTSL 1 (best) BASIC19.59■□□□□ 0.73
COL4A5P29400 SH3YL1-206ENST00000405430 2064 ntAPPRIS P1 TSL 5 BASIC19.59■□□□□ 0.73
COL4A5P29400 KCNH2-201ENST00000262186 4286 ntAPPRIS P1 TSL 1 (best) BASIC19.59■□□□□ 0.73
COL4A5P29400 RNFT2-204ENST00000407967 2415 ntTSL 5 BASIC19.59■□□□□ 0.73
COL4A5P29400 MAP3K15-201ENST00000338883 4012 ntAPPRIS P1 TSL 5 BASIC19.59■□□□□ 0.73
COL4A5P29400 MEIKIN-203ENST00000442687 1315 ntAPPRIS P2 TSL 1 (best) BASIC19.59■□□□□ 0.73
COL4A5P29400 PRSS36-201ENST00000268281 2840 ntAPPRIS P3 TSL 1 (best) BASIC19.59■□□□□ 0.73
COL4A5P29400 LAMA4-203ENST00000368638 1061 ntTSL 2 BASIC19.59■□□□□ 0.73
COL4A5P29400 ADAMTSL1-208ENST00000380570 931 ntTSL 1 (best) BASIC19.59■□□□□ 0.73
COL4A5P29400 AL162726.2-201ENST00000438986 1017 ntBASIC19.59■□□□□ 0.73
COL4A5P29400 POLR2F-208ENST00000470701 584 ntTSL 3 BASIC19.59■□□□□ 0.73
COL4A5P29400 TPI1-206ENST00000488464 791 ntTSL 5 BASIC19.59■□□□□ 0.73
COL4A5P29400 RNA5SP412-201ENST00000516234 123 ntBASIC19.59■□□□□ 0.73
COL4A5P29400 RMDN1-212ENST00000519966 1164 ntTSL 2 BASIC19.59■□□□□ 0.73
COL4A5P29400 AC103957.2-201ENST00000521218 510 ntTSL 2 BASIC19.59■□□□□ 0.73
COL4A5P29400 CMTM3-212ENST00000566121 572 ntTSL 3 BASIC19.59■□□□□ 0.73
COL4A5P29400 AC009134.1-201ENST00000571939 443 ntTSL 3 BASIC19.59■□□□□ 0.73
COL4A5P29400 AC005746.1-201ENST00000589244 672 ntTSL 3 BASIC19.59■□□□□ 0.73
COL4A5P29400 AC011466.1-201ENST00000595201 566 ntTSL 4 BASIC19.59■□□□□ 0.73
COL4A5P29400 CU634019.7-201ENST00000624153 1185 ntBASIC19.59■□□□□ 0.73
COL4A5P29400 FP236241.2-201ENST00000624906 1185 ntBASIC19.59■□□□□ 0.73
Retrieved 100 of 98,524 protein–RNA pairs in 23.5 ms