Protein–RNA interactions for Protein: P28068

HLA-DMB, HLA class II histocompatibility antigen, DM beta chain, humanhuman

Predictions only

Length 263 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HLA-DMBP28068 AL353608.3-201ENST00000603200 2211 ntTSL 5 BASIC12.74□□□□□ -0.37
HLA-DMBP28068 SARAF-201ENST00000256255 2154 ntAPPRIS P1 TSL 1 (best) BASIC12.74□□□□□ -0.37
HLA-DMBP28068 MST1L-201ENST00000442552 2185 ntBASIC12.74□□□□□ -0.37
HLA-DMBP28068 STK32C-204ENST00000368622 2010 ntTSL 1 (best) BASIC12.74□□□□□ -0.37
HLA-DMBP28068 CD72-204ENST00000396757 2035 ntAPPRIS P2 TSL 5 BASIC12.74□□□□□ -0.37
HLA-DMBP28068 TMEM25-202ENST00000354064 1965 ntTSL 2 BASIC12.74□□□□□ -0.37
HLA-DMBP28068 LRFN2-201ENST00000338305 3270 ntAPPRIS P1 TSL 1 (best) BASIC12.74□□□□□ -0.37
HLA-DMBP28068 ALDH3A1-212ENST00000494157 1572 ntTSL 3 BASIC12.74□□□□□ -0.37
HLA-DMBP28068 NBEA-201ENST00000310336 10794 ntAPPRIS ALT1 TSL 1 (best) BASIC12.74□□□□□ -0.37
HLA-DMBP28068 NBEA-208ENST00000629018 10791 ntAPPRIS ALT1 TSL 5 BASIC12.74□□□□□ -0.37
HLA-DMBP28068 P2RX5-TAX1BP3-201ENST00000550383 5905 ntAPPRIS P1 TSL 2 BASIC12.74□□□□□ -0.37
HLA-DMBP28068 AL162727.3-201ENST00000635661 2787 ntBASIC12.74□□□□□ -0.37
HLA-DMBP28068 ZNF687-201ENST00000324048 5378 ntAPPRIS P1 TSL 1 (best) BASIC12.74□□□□□ -0.37
HLA-DMBP28068 ESM1-201ENST00000381403 1326 ntTSL 1 (best) BASIC12.74□□□□□ -0.37
HLA-DMBP28068 MCL1-201ENST00000307940 1110 ntTSL 1 (best) BASIC12.74□□□□□ -0.37
HLA-DMBP28068 MAL-203ENST00000353004 873 ntTSL 1 (best) BASIC12.74□□□□□ -0.37
HLA-DMBP28068 PRSS38-201ENST00000366757 1267 ntAPPRIS P1 TSL 1 (best) BASIC12.74□□□□□ -0.37
HLA-DMBP28068 TRPC2-202ENST00000526541 1189 ntTSL 1 (best) BASIC12.74□□□□□ -0.37
HLA-DMBP28068 BLOC1S1-204ENST00000549147 1229 ntTSL 1 (best) BASIC12.74□□□□□ -0.37
HLA-DMBP28068 MIR22HG-204ENST00000571595 767 ntTSL 5 BASIC12.74□□□□□ -0.37
HLA-DMBP28068 AC036176.1-201ENST00000589905 785 ntTSL 2 BASIC12.74□□□□□ -0.37
HLA-DMBP28068 LDHAL6A-203ENST00000615355 1042 ntTSL 5 BASIC12.74□□□□□ -0.37
HLA-DMBP28068 REXO1L6P-202ENST00000619970 1078 ntBASIC12.74□□□□□ -0.37
HLA-DMBP28068 KRT76-201ENST00000332411 2529 ntAPPRIS P1 TSL 1 (best) BASIC12.74□□□□□ -0.37
HLA-DMBP28068 SLC30A1-201ENST00000367001 5474 ntAPPRIS P1 TSL 1 (best) BASIC12.74□□□□□ -0.37
HLA-DMBP28068 MAPKAP1-202ENST00000350766 3256 ntTSL 1 (best) BASIC12.74□□□□□ -0.37
HLA-DMBP28068 ANKRD24-206ENST00000600132 4026 ntAPPRIS P2 TSL 5 BASIC12.74□□□□□ -0.37
HLA-DMBP28068 MCF2L2-208ENST00000473233 4748 ntAPPRIS ALT2 TSL 5 BASIC12.74□□□□□ -0.37
HLA-DMBP28068 KCNA5-201ENST00000252321 2800 ntAPPRIS P1 BASIC12.74□□□□□ -0.37
HLA-DMBP28068 PRMT2-208ENST00000451211 1878 ntTSL 1 (best) BASIC12.74□□□□□ -0.37
HLA-DMBP28068 TIGAR-201ENST00000179259 2782 ntAPPRIS P1 TSL 1 (best) BASIC12.74□□□□□ -0.37
HLA-DMBP28068 ATP6V0E2-201ENST00000421974 2605 ntTSL 1 (best) BASIC12.74□□□□□ -0.37
HLA-DMBP28068 SGO1-203ENST00000412997 2587 ntAPPRIS P4 TSL 1 (best) BASIC12.74□□□□□ -0.37
HLA-DMBP28068 TGIF1-205ENST00000401449 1670 ntTSL 2 BASIC12.73□□□□□ -0.37
HLA-DMBP28068 ALPPL2-201ENST00000295453 2493 ntAPPRIS P1 TSL 1 (best) BASIC12.73□□□□□ -0.37
HLA-DMBP28068 AC006277.1-201ENST00000624348 1610 ntBASIC12.73□□□□□ -0.37
HLA-DMBP28068 SP2-201ENST00000376741 3112 ntAPPRIS P1 TSL 1 (best) BASIC12.73□□□□□ -0.37
HLA-DMBP28068 HOXD3-201ENST00000249440 2303 ntAPPRIS P1 TSL 1 (best) BASIC12.73□□□□□ -0.37
HLA-DMBP28068 CLPTM1-203ENST00000546079 2342 ntTSL 2 BASIC12.73□□□□□ -0.37
HLA-DMBP28068 MIF4GD-204ENST00000577542 1531 ntTSL 3 BASIC12.73□□□□□ -0.37
HLA-DMBP28068 SLC39A13-201ENST00000354884 2289 ntAPPRIS P1 TSL 1 (best) BASIC12.73□□□□□ -0.37
HLA-DMBP28068 ADGRA1-203ENST00000607359 6004 ntAPPRIS ALT2 TSL 2 BASIC12.73□□□□□ -0.37
HLA-DMBP28068 NEO1-207ENST00000560262 4315 ntTSL 1 (best) BASIC12.73□□□□□ -0.37
HLA-DMBP28068 NCF1C-201ENST00000438382 1427 ntBASIC12.73□□□□□ -0.37
HLA-DMBP28068 CACFD1-202ENST00000316948 2794 ntAPPRIS P3 TSL 1 (best) BASIC12.73□□□□□ -0.37
HLA-DMBP28068 COPS7B-206ENST00000410017 2051 ntTSL 3 BASIC12.73□□□□□ -0.37
HLA-DMBP28068 CTSB-201ENST00000345125 2028 ntAPPRIS P1 TSL 5 BASIC12.73□□□□□ -0.37
HLA-DMBP28068 RHOT1-203ENST00000358365 3297 ntTSL 1 (best) BASIC12.73□□□□□ -0.37
HLA-DMBP28068 PCDHA12-201ENST00000398631 5233 ntAPPRIS P1 TSL 1 (best) BASIC12.73□□□□□ -0.37
HLA-DMBP28068 ZNF84-208ENST00000539354 3237 ntAPPRIS P2 TSL 1 (best) BASIC12.73□□□□□ -0.37
HLA-DMBP28068 CDCA5-201ENST00000275517 2587 ntAPPRIS P1 TSL 1 (best) BASIC12.73□□□□□ -0.37
HLA-DMBP28068 AKR1C7P-201ENST00000305623 895 ntBASIC12.73□□□□□ -0.37
HLA-DMBP28068 MCRIP2-201ENST00000307650 946 ntAPPRIS P1 TSL 1 (best) BASIC12.73□□□□□ -0.37
HLA-DMBP28068 EXOSC3-202ENST00000396521 768 ntTSL 2 BASIC12.73□□□□□ -0.37
HLA-DMBP28068 FDX1P1-201ENST00000449115 551 ntBASIC12.73□□□□□ -0.37
HLA-DMBP28068 AC009078.2-202ENST00000463353 338 ntBASIC12.73□□□□□ -0.37
HLA-DMBP28068 AC080013.1-203ENST00000468242 720 ntTSL 5 BASIC12.73□□□□□ -0.37
HLA-DMBP28068 AC080013.1-201ENST00000495318 566 ntTSL 4 BASIC12.73□□□□□ -0.37
HLA-DMBP28068 AC103957.2-201ENST00000521218 510 ntTSL 2 BASIC12.73□□□□□ -0.37
HLA-DMBP28068 LINC01956-202ENST00000584273 612 ntTSL 3 BASIC12.73□□□□□ -0.37
HLA-DMBP28068 AC002091.2-201ENST00000585297 402 ntTSL 2 BASIC12.73□□□□□ -0.37
HLA-DMBP28068 RLN3-202ENST00000585987 541 ntTSL 1 (best) BASIC12.73□□□□□ -0.37
HLA-DMBP28068 MTDHP3-201ENST00000594186 672 ntBASIC12.73□□□□□ -0.37
HLA-DMBP28068 AL022326.1-202ENST00000641533 845 ntBASIC12.73□□□□□ -0.37
HLA-DMBP28068 COQ8B-202ENST00000324464 2443 ntAPPRIS P3 TSL 1 (best) BASIC12.73□□□□□ -0.37
HLA-DMBP28068 WDR81-206ENST00000446363 2968 ntTSL 1 (best) BASIC12.73□□□□□ -0.37
HLA-DMBP28068 MYB-242ENST00000618728 3545 ntTSL 5 BASIC12.73□□□□□ -0.37
HLA-DMBP28068 ITGA7-202ENST00000347027 4084 ntAPPRIS ALT2 TSL 5 BASIC12.73□□□□□ -0.37
HLA-DMBP28068 PCNP-201ENST00000265260 2342 ntAPPRIS P1 TSL 1 (best) BASIC12.73□□□□□ -0.37
HLA-DMBP28068 AL671710.1-201ENST00000610245 2349 ntBASIC12.73□□□□□ -0.37
HLA-DMBP28068 AC007950.2-201ENST00000615045 2347 ntBASIC12.73□□□□□ -0.37
HLA-DMBP28068 COLGALT2-201ENST00000361927 5177 ntAPPRIS P1 TSL 1 (best) BASIC12.73□□□□□ -0.37
HLA-DMBP28068 GABARAPL1-205ENST00000539170 1700 ntTSL 3 BASIC12.73□□□□□ -0.37
HLA-DMBP28068 PPP6R1-201ENST00000412770 3961 ntAPPRIS P1 TSL 1 (best) BASIC12.73□□□□□ -0.37
HLA-DMBP28068 PGR-209ENST00000617858 2816 ntTSL 5 BASIC12.73□□□□□ -0.37
HLA-DMBP28068 RAD1-208ENST00000628399 1678 ntTSL 3 BASIC12.73□□□□□ -0.37
HLA-DMBP28068 RPL3L-201ENST00000268661 2182 ntAPPRIS P1 TSL 1 (best) BASIC12.73□□□□□ -0.37
HLA-DMBP28068 SLC29A1-202ENST00000371713 2168 ntAPPRIS P1 TSL 5 BASIC12.73□□□□□ -0.37
HLA-DMBP28068 PITHD1-201ENST00000246151 1603 ntAPPRIS P1 TSL 1 (best) BASIC12.73□□□□□ -0.37
HLA-DMBP28068 PLPPR4-203ENST00000457765 4846 ntTSL 2 BASIC12.73□□□□□ -0.37
HLA-DMBP28068 CARS-203ENST00000397111 2685 ntTSL 1 (best) BASIC12.73□□□□□ -0.37
HLA-DMBP28068 LYPD5-202ENST00000414615 2137 ntAPPRIS P3 TSL 2 BASIC12.73□□□□□ -0.37
HLA-DMBP28068 ELMO1-209ENST00000448602 2621 ntAPPRIS P1 TSL 1 (best) BASIC12.73□□□□□ -0.37
HLA-DMBP28068 DKC1-213ENST00000620277 3079 ntAPPRIS ALT2 TSL 1 (best) BASIC12.73□□□□□ -0.37
HLA-DMBP28068 SLK-201ENST00000335753 7673 ntTSL 1 (best) BASIC12.73□□□□□ -0.37
HLA-DMBP28068 AC023830.1-201ENST00000569678 1543 ntTSL 2 BASIC12.72□□□□□ -0.37
HLA-DMBP28068 FUT3-202ENST00000458379 2024 ntAPPRIS P1 TSL 1 (best) BASIC12.72□□□□□ -0.37
HLA-DMBP28068 ME2P1-201ENST00000426028 1970 ntBASIC12.72□□□□□ -0.37
HLA-DMBP28068 PAM-206ENST00000438793 5432 ntAPPRIS ALT1 TSL 1 (best) BASIC12.72□□□□□ -0.37
HLA-DMBP28068 PSMC5-202ENST00000375812 1494 ntTSL 2 BASIC12.72□□□□□ -0.37
HLA-DMBP28068 VIPR2-202ENST00000377633 1491 ntTSL 2 BASIC12.72□□□□□ -0.37
HLA-DMBP28068 WNT2-201ENST00000265441 2907 ntAPPRIS P1 TSL 1 (best) BASIC12.72□□□□□ -0.37
HLA-DMBP28068 AL513477.1-201ENST00000602865 2407 ntBASIC12.72□□□□□ -0.37
HLA-DMBP28068 GDF5-201ENST00000374369 2383 ntAPPRIS P1 TSL 1 (best) BASIC12.72□□□□□ -0.37
HLA-DMBP28068 CBARP-204ENST00000590083 4261 ntAPPRIS P2 TSL 1 (best) BASIC12.72□□□□□ -0.37
HLA-DMBP28068 AC105760.2-201ENST00000418430 2341 ntTSL 2 BASIC12.72□□□□□ -0.37
HLA-DMBP28068 SMG1P3-206ENST00000522841 2774 ntTSL 2 BASIC12.72□□□□□ -0.37
HLA-DMBP28068 TSPOAP1-202ENST00000343736 5947 ntAPPRIS P3 TSL 1 (best) BASIC12.72□□□□□ -0.37
HLA-DMBP28068 ITPKB-201ENST00000272117 5822 ntAPPRIS P1 TSL 1 (best) BASIC12.72□□□□□ -0.37
HLA-DMBP28068 RBPJ-204ENST00000348160 1752 ntAPPRIS ALT1 TSL 1 (best) BASIC12.72□□□□□ -0.37
Retrieved 100 of 98,524 protein–RNA pairs in 26 ms