Protein–RNA interactions for Protein: P27658

COL8A1, Collagen alpha-1(VIII) chain, humanhuman

Predictions only

Length 744 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL8A1P27658 C12orf10-204ENST00000548632 988 ntTSL 1 (best) BASIC14.49□□□□□ -0.09
COL8A1P27658 GSTZ1-219ENST00000557639 873 ntTSL 2 BASIC14.49□□□□□ -0.09
COL8A1P27658 LITAF-210ENST00000571976 548 ntTSL 2 BASIC14.49□□□□□ -0.09
COL8A1P27658 LITAF-214ENST00000574703 486 ntTSL 2 BASIC14.49□□□□□ -0.09
COL8A1P27658 WNT11-204ENST00000621122 789 ntTSL 5 BASIC14.49□□□□□ -0.09
COL8A1P27658 RASSF1-210ENST00000616212 1842 ntTSL 2 BASIC14.49□□□□□ -0.09
COL8A1P27658 NFATC4-208ENST00000553708 5367 ntAPPRIS ALT2 TSL 1 (best) BASIC14.49□□□□□ -0.09
COL8A1P27658 PPT2-247ENST00000375143 1754 ntAPPRIS ALT2 TSL 5 BASIC14.49□□□□□ -0.09
COL8A1P27658 PRR5-201ENST00000006251 1767 ntTSL 2 BASIC14.49□□□□□ -0.09
COL8A1P27658 LIN28B-AS1-203ENST00000636682 1797 ntTSL 3 BASIC14.49□□□□□ -0.09
COL8A1P27658 PRRT2-205ENST00000567659 1470 ntTSL 2 BASIC14.49□□□□□ -0.09
COL8A1P27658 THAP12-201ENST00000260045 3300 ntAPPRIS P1 TSL 1 (best) BASIC14.49□□□□□ -0.09
COL8A1P27658 RAD23A-201ENST00000316856 1736 ntAPPRIS ALT1 TSL 1 (best) BASIC14.49□□□□□ -0.09
COL8A1P27658 VIPR1-201ENST00000325123 2773 ntAPPRIS P1 TSL 1 (best) BASIC14.49□□□□□ -0.09
COL8A1P27658 ALDOC-201ENST00000226253 1982 ntAPPRIS P1 TSL 1 (best) BASIC14.49□□□□□ -0.09
COL8A1P27658 ORC5-201ENST00000297431 1958 ntAPPRIS P1 TSL 1 (best) BASIC14.49□□□□□ -0.09
COL8A1P27658 AL139130.1-201ENST00000451362 5586 ntTSL 1 (best) BASIC14.49□□□□□ -0.09
COL8A1P27658 UBA6-AS1-201ENST00000498917 1445 ntTSL 1 (best) BASIC14.49□□□□□ -0.09
COL8A1P27658 LSP1-201ENST00000311604 1699 ntAPPRIS P4 TSL 1 (best) BASIC14.49□□□□□ -0.09
COL8A1P27658 NOC2LP2-201ENST00000407594 1944 ntBASIC14.49□□□□□ -0.09
COL8A1P27658 CD55-206ENST00000391921 2433 ntTSL 1 (best) BASIC14.49□□□□□ -0.09
COL8A1P27658 AC022916.1-201ENST00000590478 2658 ntTSL 2 BASIC14.49□□□□□ -0.09
COL8A1P27658 MAFK-201ENST00000343242 3368 ntAPPRIS P1 TSL 1 (best) BASIC14.48□□□□□ -0.09
COL8A1P27658 GIT2-202ENST00000354574 5387 ntTSL 5 BASIC14.48□□□□□ -0.09
COL8A1P27658 ACP5-203ENST00000433365 1397 ntAPPRIS P1 TSL 1 (best) BASIC14.48□□□□□ -0.09
COL8A1P27658 PRDM14-201ENST00000276594 2344 ntAPPRIS P1 TSL 1 (best) BASIC14.48□□□□□ -0.09
COL8A1P27658 ZDHHC8P1-204ENST00000433168 2309 ntTSL 2 BASIC14.48□□□□□ -0.09
COL8A1P27658 SPERT-202ENST00000378966 1842 ntAPPRIS ALT2 TSL 1 (best) BASIC14.48□□□□□ -0.09
COL8A1P27658 ARHGEF40-201ENST00000298694 5919 ntAPPRIS P1 TSL 2 BASIC14.48□□□□□ -0.09
COL8A1P27658 RHD-204ENST00000417538 1333 ntAPPRIS ALT2 TSL 1 (best) BASIC14.48□□□□□ -0.09
COL8A1P27658 AKR7L-202ENST00000429712 1313 ntAPPRIS P5 TSL 1 (best) BASIC14.48□□□□□ -0.09
COL8A1P27658 RPN2-201ENST00000237530 2515 ntAPPRIS P1 TSL 1 (best) BASIC14.48□□□□□ -0.09
COL8A1P27658 USP3-AS1-201ENST00000558831 1784 ntTSL 1 (best) BASIC14.48□□□□□ -0.09
COL8A1P27658 CLN8-211ENST00000636934 1790 ntTSL 5 BASIC14.48□□□□□ -0.09
COL8A1P27658 ZZZ3-201ENST00000370798 2468 ntTSL 1 (best) BASIC14.48□□□□□ -0.09
COL8A1P27658 POMK-203ENST00000614426 1527 ntAPPRIS P1 TSL 4 BASIC14.48□□□□□ -0.09
COL8A1P27658 TTLL12-201ENST00000216129 3385 ntAPPRIS P1 TSL 1 (best) BASIC14.48□□□□□ -0.09
COL8A1P27658 CCDC182-201ENST00000299415 832 ntAPPRIS P1 BASIC14.48□□□□□ -0.09
COL8A1P27658 GBGT1-202ENST00000372038 847 ntTSL 3 BASIC14.48□□□□□ -0.09
COL8A1P27658 NXT2-202ENST00000372103 1085 ntTSL 1 (best) BASIC14.48□□□□□ -0.09
COL8A1P27658 EIF1AX-201ENST00000379593 765 ntTSL 3 BASIC14.48□□□□□ -0.09
COL8A1P27658 BRWD1P1-201ENST00000401091 371 ntBASIC14.48□□□□□ -0.09
COL8A1P27658 AL355994.3-201ENST00000437156 466 ntTSL 2 BASIC14.48□□□□□ -0.09
COL8A1P27658 TAF8-204ENST00000456846 1293 ntAPPRIS ALT1 TSL 1 (best) BASIC14.48□□□□□ -0.09
COL8A1P27658 ELK1P1-201ENST00000485699 580 ntBASIC14.48□□□□□ -0.09
COL8A1P27658 AC005833.2-201ENST00000527518 1249 ntTSL 1 (best) BASIC14.48□□□□□ -0.09
COL8A1P27658 PPP1R14B-203ENST00000542235 920 ntTSL 1 (best) BASIC14.48□□□□□ -0.09
COL8A1P27658 AC044860.1-202ENST00000559481 777 ntBASIC14.48□□□□□ -0.09
COL8A1P27658 C17orf62-239ENST00000585080 741 ntAPPRIS P1 TSL 5 BASIC14.48□□□□□ -0.09
COL8A1P27658 ASPRV1-201ENST00000320256 2177 ntAPPRIS P1 BASIC14.48□□□□□ -0.09
COL8A1P27658 CGB7-202ENST00000596965 1949 ntAPPRIS P1 TSL 2 BASIC14.48□□□□□ -0.09
COL8A1P27658 TCF4-201ENST00000354452 3482 ntAPPRIS ALT1 TSL 5 BASIC14.48□□□□□ -0.09
COL8A1P27658 TMEM161A-206ENST00000587583 1654 ntTSL 5 BASIC14.48□□□□□ -0.09
COL8A1P27658 AC090206.1-201ENST00000615734 1678 ntTSL 5 BASIC14.48□□□□□ -0.09
COL8A1P27658 CACNA1A-240ENST00000637432 7809 ntAPPRIS ALT2 TSL 5 BASIC14.48□□□□□ -0.09
COL8A1P27658 ATRIP-202ENST00000346691 2509 ntTSL 1 (best) BASIC14.48□□□□□ -0.09
COL8A1P27658 TMEM106C-203ENST00000449758 1414 ntTSL 2 BASIC14.48□□□□□ -0.09
COL8A1P27658 CHID1-215ENST00000528581 1431 ntTSL 2 BASIC14.48□□□□□ -0.09
COL8A1P27658 GALNT14-202ENST00000349752 2733 ntAPPRIS P1 TSL 1 (best) BASIC14.48□□□□□ -0.09
COL8A1P27658 PLEKHB1-203ENST00000398492 2275 ntAPPRIS ALT1 TSL 1 (best) BASIC14.48□□□□□ -0.09
COL8A1P27658 AP000997.3-201ENST00000623333 2250 ntBASIC14.48□□□□□ -0.09
COL8A1P27658 TEF-201ENST00000266304 4394 ntAPPRIS P1 TSL 1 (best) BASIC14.48□□□□□ -0.09
COL8A1P27658 MTMR12-201ENST00000264934 2215 ntTSL 2 BASIC14.47□□□□□ -0.09
COL8A1P27658 CXXC1-212ENST00000589940 2242 ntTSL 1 (best) BASIC14.47□□□□□ -0.09
COL8A1P27658 DDC-202ENST00000380984 1366 ntTSL 1 (best) BASIC14.47□□□□□ -0.09
COL8A1P27658 OTUB1-206ENST00000535715 1391 ntTSL 5 BASIC14.47□□□□□ -0.09
COL8A1P27658 IL11RA-215ENST00000602473 1388 ntTSL 1 (best) BASIC14.47□□□□□ -0.09
COL8A1P27658 KCNB1-203ENST00000635465 4114 ntAPPRIS P1 TSL 1 (best) BASIC14.47□□□□□ -0.09
COL8A1P27658 PTTG1IP-203ENST00000397887 2413 ntTSL 4 BASIC14.47□□□□□ -0.09
COL8A1P27658 FAM83A-202ENST00000518448 5393 ntAPPRIS P1 TSL 1 (best) BASIC14.47□□□□□ -0.09
COL8A1P27658 AC020916.1-201ENST00000587762 1774 ntBASIC14.47□□□□□ -0.09
COL8A1P27658 BANP-202ENST00000355022 2164 ntTSL 1 (best) BASIC14.47□□□□□ -0.09
COL8A1P27658 HECTD1-201ENST00000399332 9134 ntAPPRIS P1 TSL 5 BASIC14.47□□□□□ -0.09
COL8A1P27658 TSC2-204ENST00000401874 5421 ntAPPRIS ALT2 TSL 1 (best) BASIC14.47□□□□□ -0.09
COL8A1P27658 KLRG1-201ENST00000266551 1335 ntTSL 1 (best) BASIC14.47□□□□□ -0.09
COL8A1P27658 GSS-201ENST00000216951 1922 ntAPPRIS P1 TSL 1 (best) BASIC14.47□□□□□ -0.09
COL8A1P27658 PCOLCE-AS1-201ENST00000442166 2537 ntTSL 2 BASIC14.47□□□□□ -0.09
COL8A1P27658 HECTD2-204ENST00000446394 4939 ntTSL 2 BASIC14.47□□□□□ -0.09
COL8A1P27658 ECE1-203ENST00000374893 2484 ntTSL 1 (best) BASIC14.47□□□□□ -0.09
COL8A1P27658 TRAF3-203ENST00000392745 2459 ntAPPRIS P1 TSL 1 (best) BASIC14.47□□□□□ -0.09
COL8A1P27658 NF1-211ENST00000487476 2265 ntTSL 1 (best) BASIC14.47□□□□□ -0.09
COL8A1P27658 SLC22A20-204ENST00000530038 1673 ntBASIC14.47□□□□□ -0.09
COL8A1P27658 PRRT3-202ENST00000411976 1475 ntAPPRIS ALT2 TSL 1 (best) BASIC14.47□□□□□ -0.09
COL8A1P27658 NRN1L-201ENST00000339176 710 ntAPPRIS P2 TSL 1 (best) BASIC14.47□□□□□ -0.09
COL8A1P27658 IGHV3-16-201ENST00000390604 425 ntAPPRIS P1 BASIC14.47□□□□□ -0.09
COL8A1P27658 RPL13A-201ENST00000391857 1181 ntAPPRIS P1 TSL 1 (best) BASIC14.47□□□□□ -0.09
COL8A1P27658 PSORS1C3-201ENST00000412143 593 ntTSL 1 (best) BASIC14.47□□□□□ -0.09
COL8A1P27658 STK33P1-201ENST00000423835 1218 ntBASIC14.47□□□□□ -0.09
COL8A1P27658 AC017116.1-201ENST00000445938 708 ntTSL 3 BASIC14.47□□□□□ -0.09
COL8A1P27658 AC140481.1-201ENST00000448777 706 ntTSL 3 BASIC14.47□□□□□ -0.09
COL8A1P27658 AC078852.2-201ENST00000504748 527 ntTSL 5 BASIC14.47□□□□□ -0.09
COL8A1P27658 AL583810.1-201ENST00000553344 1045 ntBASIC14.47□□□□□ -0.09
COL8A1P27658 AP001033.1-201ENST00000584509 466 ntTSL 3 BASIC14.47□□□□□ -0.09
COL8A1P27658 AC111170.2-201ENST00000585369 768 ntTSL 3 BASIC14.47□□□□□ -0.09
COL8A1P27658 TTLL9-205ENST00000375938 2623 ntAPPRIS P2 TSL 2 BASIC14.47□□□□□ -0.09
COL8A1P27658 TCF25-225ENST00000614813 2047 ntTSL 5 BASIC14.47□□□□□ -0.09
COL8A1P27658 NOMO1-208ENST00000620755 3921 ntAPPRIS ALT2 TSL 1 (best) BASIC14.47□□□□□ -0.09
COL8A1P27658 ACOT7-204ENST00000377855 1614 ntAPPRIS P4 TSL 1 (best) BASIC14.47□□□□□ -0.09
COL8A1P27658 LZTS1-203ENST00000522290 1614 ntTSL 1 (best) BASIC14.47□□□□□ -0.09
COL8A1P27658 PAAF1-207ENST00000536003 1639 ntTSL 1 (best) BASIC14.47□□□□□ -0.09
Retrieved 100 of 98,524 protein–RNA pairs in 26.6 ms