Protein–RNA interactions for Protein: P26640

VARS, Valine--tRNA ligase, humanhuman

Known RBP Predictions only

Length 1,264 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VARSP26640 COX10-201ENST00000261643 2873 ntAPPRIS P1 TSL 1 (best) BASIC16.43■□□□□ 0.22
VARSP26640 RBM47-212ENST00000514014 2419 ntTSL 2 BASIC16.43■□□□□ 0.22
VARSP26640 LAMTOR5-201ENST00000256644 868 ntTSL 1 (best) BASIC16.43■□□□□ 0.22
VARSP26640 GPRC5C-201ENST00000342648 1273 ntTSL 5 BASIC16.43■□□□□ 0.22
VARSP26640 INIP-202ENST00000374236 874 ntTSL 2 BASIC16.43■□□□□ 0.22
VARSP26640 PTTG1-202ENST00000393964 1070 ntAPPRIS P1 TSL 1 (best) BASIC16.43■□□□□ 0.22
VARSP26640 PRR29-203ENST00000425164 1266 ntTSL 2 BASIC16.43■□□□□ 0.22
VARSP26640 ODF3B-205ENST00000428989 762 ntAPPRIS P1 TSL 1 (best) BASIC16.43■□□□□ 0.22
VARSP26640 ZNF295-AS1-202ENST00000429739 783 ntTSL 1 (best) BASIC16.43■□□□□ 0.22
VARSP26640 RMDN1-202ENST00000430676 1106 ntTSL 2 BASIC16.43■□□□□ 0.22
VARSP26640 AP000355.1-201ENST00000432032 480 ntTSL 5 BASIC16.43■□□□□ 0.22
VARSP26640 ITGB1BP1-205ENST00000456913 1043 ntTSL 2 BASIC16.43■□□□□ 0.22
VARSP26640 IDH3B-206ENST00000474315 1279 ntAPPRIS ALT1 TSL 1 (best) BASIC16.43■□□□□ 0.22
VARSP26640 LAMTOR5-204ENST00000483260 694 ntTSL 2 BASIC16.43■□□□□ 0.22
VARSP26640 ITGB1BP1-216ENST00000488451 874 ntTSL 3 BASIC16.43■□□□□ 0.22
VARSP26640 MKNK2-212ENST00000591588 631 ntTSL 2 BASIC16.43■□□□□ 0.22
VARSP26640 LAMTOR5-206ENST00000602318 634 ntAPPRIS P1 TSL 1 (best) BASIC16.43■□□□□ 0.22
VARSP26640 SLC38A11-202ENST00000409058 1647 ntAPPRIS ALT2 TSL 5 BASIC16.43■□□□□ 0.22
VARSP26640 JPT1-209ENST00000482348 1614 ntTSL 1 (best) BASIC16.43■□□□□ 0.22
VARSP26640 SATB2-202ENST00000417098 5730 ntAPPRIS P1 TSL 2 BASIC16.43■□□□□ 0.22
VARSP26640 RAB33B-201ENST00000305626 4562 ntAPPRIS P1 TSL 1 (best) BASIC16.43■□□□□ 0.22
VARSP26640 MRFAP1-205ENST00000617365 2112 ntTSL 5 BASIC16.43■□□□□ 0.22
VARSP26640 CHAD-203ENST00000508540 1789 ntAPPRIS P1 TSL 1 (best) BASIC16.43■□□□□ 0.22
VARSP26640 DDX19B-207ENST00000563206 1765 ntTSL 5 BASIC16.43■□□□□ 0.22
VARSP26640 ZNF805-201ENST00000354309 2396 ntTSL 5 BASIC16.43■□□□□ 0.22
VARSP26640 AIFM2-201ENST00000307864 3243 ntAPPRIS P1 TSL 1 (best) BASIC16.43■□□□□ 0.22
VARSP26640 BRF1-201ENST00000327359 2292 ntTSL 2 BASIC16.43■□□□□ 0.22
VARSP26640 C11orf49-204ENST00000395460 1916 ntTSL 1 (best) BASIC16.43■□□□□ 0.22
VARSP26640 SLC3A2-203ENST00000377890 2161 ntTSL 1 (best) BASIC16.43■□□□□ 0.22
VARSP26640 PABPC4-201ENST00000372856 3016 ntAPPRIS P1 TSL 1 (best) BASIC16.43■□□□□ 0.22
VARSP26640 TUBGCP2-202ENST00000368562 2685 ntTSL 2 BASIC16.42■□□□□ 0.22
VARSP26640 LINC00884-202ENST00000448892 2680 ntTSL 5 BASIC16.42■□□□□ 0.22
VARSP26640 SYT6-205ENST00000609117 4424 ntTSL 5 BASIC16.42■□□□□ 0.22
VARSP26640 AC005329.1-201ENST00000501448 3571 ntTSL 2 BASIC16.42■□□□□ 0.22
VARSP26640 ASB16-AS1-201ENST00000585457 2213 ntTSL 2 BASIC16.42■□□□□ 0.22
VARSP26640 ANKRD17-201ENST00000330838 7734 ntAPPRIS ALT2 TSL 2 BASIC16.42■□□□□ 0.22
VARSP26640 HDAC8-206ENST00000373571 2133 ntTSL 5 BASIC16.42■□□□□ 0.22
VARSP26640 DHDH-201ENST00000221403 1081 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
VARSP26640 GYG2P1-204ENST00000382966 639 ntTSL 3 BASIC16.42■□□□□ 0.22
VARSP26640 CHMP3-203ENST00000409225 1099 ntTSL 2 BASIC16.42■□□□□ 0.22
VARSP26640 WNT7B-203ENST00000410058 714 ntTSL 3 BASIC16.42■□□□□ 0.22
VARSP26640 UPF3AP3-201ENST00000420996 769 ntBASIC16.42■□□□□ 0.22
VARSP26640 AL450267.1-201ENST00000557174 520 ntTSL 5 BASIC16.42■□□□□ 0.22
VARSP26640 AC012640.2-201ENST00000561606 901 ntBASIC16.42■□□□□ 0.22
VARSP26640 AC006557.2-201ENST00000592985 1240 ntBASIC16.42■□□□□ 0.22
VARSP26640 SMIM22-210ENST00000615471 928 ntAPPRIS ALT2 TSL 3 BASIC16.42■□□□□ 0.22
VARSP26640 SLC26A1-205ENST00000622731 1057 ntTSL 5 BASIC16.42■□□□□ 0.22
VARSP26640 ATP6AP2-220ENST00000636970 1187 ntAPPRIS ALT2 TSL 5 BASIC16.42■□□□□ 0.22
VARSP26640 TEX19-201ENST00000333437 1936 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
VARSP26640 TNFRSF10A-201ENST00000221132 2714 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
VARSP26640 CFAP77-201ENST00000343036 1818 ntAPPRIS P3 TSL 2 BASIC16.42■□□□□ 0.22
VARSP26640 UNC5D-203ENST00000416672 3532 ntAPPRIS ALT2 TSL 5 BASIC16.42■□□□□ 0.22
VARSP26640 BCL11B-202ENST00000357195 7559 ntAPPRIS P4 TSL 1 (best) BASIC16.42■□□□□ 0.22
VARSP26640 DMAP1-201ENST00000315913 1552 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
VARSP26640 HOXA10-202ENST00000396344 1570 ntAPPRIS ALT1 TSL 1 (best) BASIC16.42■□□□□ 0.22
VARSP26640 LINC00894-202ENST00000425602 1597 ntTSL 2 BASIC16.42■□□□□ 0.22
VARSP26640 PHRF1-201ENST00000264555 5523 ntAPPRIS ALT2 TSL 1 (best) BASIC16.42■□□□□ 0.22
VARSP26640 C8orf49-201ENST00000525043 1968 ntBASIC16.42■□□□□ 0.22
VARSP26640 TSC2-204ENST00000401874 5421 ntAPPRIS ALT2 TSL 1 (best) BASIC16.42■□□□□ 0.22
VARSP26640 PDCL3-201ENST00000264254 1337 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
VARSP26640 QRFPR-202ENST00000394427 1708 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
VARSP26640 HSPA1B-201ENST00000375650 2521 ntAPPRIS P1 BASIC16.42■□□□□ 0.22
VARSP26640 BBS5-201ENST00000295240 3475 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
VARSP26640 BANP-204ENST00000393208 2283 ntTSL 2 BASIC16.42■□□□□ 0.22
VARSP26640 FAM46A-201ENST00000320172 5609 ntAPPRIS P2 TSL 1 (best) BASIC16.42■□□□□ 0.22
VARSP26640 CDC25B-204ENST00000379598 2990 ntTSL 2 BASIC16.41■□□□□ 0.22
VARSP26640 STIM2-203ENST00000467011 3925 ntAPPRIS ALT2 TSL 1 (best) BASIC16.41■□□□□ 0.22
VARSP26640 IGSF8-205ENST00000614243 2191 ntAPPRIS P2 TSL 1 (best) BASIC16.41■□□□□ 0.22
VARSP26640 CTD-3080P12.3-203ENST00000514376 1757 ntTSL 1 (best) BASIC16.41■□□□□ 0.22
VARSP26640 FGFBP1-201ENST00000382333 1359 ntAPPRIS P1 TSL 3 BASIC16.41■□□□□ 0.22
VARSP26640 CHRNG-201ENST00000389492 1398 ntTSL 1 (best) BASIC16.41■□□□□ 0.22
VARSP26640 TSHZ1-204ENST00000580243 3582 ntAPPRIS P1 TSL 2 BASIC16.41■□□□□ 0.22
VARSP26640 LITAF-202ENST00000381810 1527 ntTSL 5 BASIC16.41■□□□□ 0.22
VARSP26640 KCNJ10-208ENST00000639408 1546 ntTSL 5 BASIC16.41■□□□□ 0.22
VARSP26640 ACSF3-204ENST00000406948 2247 ntAPPRIS P1 TSL 2 BASIC16.41■□□□□ 0.22
VARSP26640 DUSP8-201ENST00000331588 4455 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
VARSP26640 GLDC-201ENST00000321612 3900 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
VARSP26640 GCFC2-202ENST00000409857 2516 ntTSL 5 BASIC16.41■□□□□ 0.22
VARSP26640 IDH2-201ENST00000330062 2694 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
VARSP26640 ZAR1L-201ENST00000345108 1103 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
VARSP26640 AC073621.1-201ENST00000392730 636 ntBASIC16.41■□□□□ 0.22
VARSP26640 CLDN14-205ENST00000399139 1231 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
VARSP26640 GNB2-205ENST00000419828 1285 ntTSL 5 BASIC16.41■□□□□ 0.22
VARSP26640 MED15P5-201ENST00000423150 992 ntBASIC16.41■□□□□ 0.22
VARSP26640 KRT18P27-201ENST00000427733 1299 ntBASIC16.41■□□□□ 0.22
VARSP26640 LMX1B-203ENST00000526117 1195 ntTSL 1 (best) BASIC16.41■□□□□ 0.22
VARSP26640 AC069287.3-201ENST00000527297 589 ntTSL 5 BASIC16.41■□□□□ 0.22
VARSP26640 EEF1D-238ENST00000531621 840 ntTSL 3 BASIC16.41■□□□□ 0.22
VARSP26640 AC116612.1-201ENST00000557144 562 ntTSL 3 BASIC16.41■□□□□ 0.22
VARSP26640 AC040169.1-201ENST00000565382 521 ntBASIC16.41■□□□□ 0.22
VARSP26640 AC133919.2-201ENST00000565965 589 ntTSL 4 BASIC16.41■□□□□ 0.22
VARSP26640 ZPBP2-204ENST00000584588 1277 ntTSL 5 BASIC16.41■□□□□ 0.22
VARSP26640 STX10-207ENST00000589083 1241 ntTSL 1 (best) BASIC16.41■□□□□ 0.22
VARSP26640 LY6E-207ENST00000520466 1419 ntAPPRIS P2 TSL 2 BASIC16.41■□□□□ 0.22
VARSP26640 TK2-207ENST00000544898 3441 ntAPPRIS P3 TSL 1 (best) BASIC16.41■□□□□ 0.22
VARSP26640 LINC00887-203ENST00000429578 1717 ntTSL 2 BASIC16.41■□□□□ 0.22
VARSP26640 OSBPL1A-203ENST00000399441 1887 ntTSL 1 (best) BASIC16.41■□□□□ 0.22
VARSP26640 SLA2-202ENST00000360672 2171 ntTSL 5 BASIC16.41■□□□□ 0.22
VARSP26640 SDC4-201ENST00000372733 2613 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
VARSP26640 TCOF1-206ENST00000445265 4825 ntAPPRIS ALT2 TSL 5 BASIC16.41■□□□□ 0.22
Retrieved 100 of 98,524 protein–RNA pairs in 51.5 ms