Protein–RNA interactions for Protein: O43196

MSH5, MutS protein homolog 5, humanhuman

Predictions only

Length 834 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSH5O43196 PTMA-201ENST00000341369 1212 ntAPPRIS P3 TSL 1 (best) BASIC23.07■■□□□ 1.28
MSH5O43196 HCCS-202ENST00000380762 1072 ntAPPRIS P1 TSL 1 (best) BASIC23.07■■□□□ 1.28
MSH5O43196 AC138392.1-201ENST00000427577 921 ntBASIC23.07■■□□□ 1.28
MSH5O43196 AL035246.1-201ENST00000433554 1255 ntBASIC23.07■■□□□ 1.28
MSH5O43196 AP006288.1-201ENST00000446065 395 ntBASIC23.07■■□□□ 1.28
MSH5O43196 RNASEH2B-AS1-201ENST00000454605 1007 ntTSL 3 BASIC23.07■■□□□ 1.28
MSH5O43196 LINC00237-202ENST00000455890 1220 ntTSL 2 BASIC23.07■■□□□ 1.28
MSH5O43196 AC095050.1-201ENST00000502661 905 ntTSL 5 BASIC23.07■■□□□ 1.28
MSH5O43196 AC008494.2-201ENST00000514544 370 ntBASIC23.07■■□□□ 1.28
MSH5O43196 AC098679.3-203ENST00000514881 919 ntBASIC23.07■■□□□ 1.28
MSH5O43196 CPSF1-207ENST00000531727 704 ntTSL 3 BASIC23.07■■□□□ 1.28
MSH5O43196 AC023538.1-201ENST00000534576 736 ntBASIC23.07■■□□□ 1.28
MSH5O43196 LINC01413-201ENST00000564843 772 ntTSL 3 BASIC23.07■■□□□ 1.28
MSH5O43196 AC010528.1-201ENST00000568714 739 ntTSL 4 BASIC23.07■■□□□ 1.28
MSH5O43196 MIMT1-202ENST00000599641 1290 ntTSL 1 (best) BASIC23.07■■□□□ 1.28
MSH5O43196 AL138831.2-201ENST00000606564 490 ntBASIC23.07■■□□□ 1.28
MSH5O43196 AC007620.3-201ENST00000608131 497 ntBASIC23.07■■□□□ 1.28
MSH5O43196 AC009090.3-201ENST00000616553 565 ntBASIC23.07■■□□□ 1.28
MSH5O43196 AC236972.3-202ENST00000620734 1222 ntTSL 3 BASIC23.07■■□□□ 1.28
MSH5O43196 AC139713.2-210ENST00000641741 992 ntBASIC23.07■■□□□ 1.28
MSH5O43196 HDAC11-214ENST00000446613 2875 ntTSL 5 BASIC23.07■■□□□ 1.28
MSH5O43196 RAB15-203ENST00000533601 3515 ntAPPRIS P1 TSL 1 (best) BASIC23.07■■□□□ 1.28
MSH5O43196 ANKS6-202ENST00000375019 2586 ntTSL 5 BASIC23.07■■□□□ 1.28
MSH5O43196 SYT17-207ENST00000568115 1721 ntTSL 5 BASIC23.07■■□□□ 1.28
MSH5O43196 EML6-201ENST00000356458 8320 ntAPPRIS P1 TSL 5 BASIC23.07■■□□□ 1.28
MSH5O43196 DIRC2-201ENST00000261038 3596 ntAPPRIS P1 TSL 1 (best) BASIC23.07■■□□□ 1.28
MSH5O43196 PUS1-208ENST00000542167 2151 ntTSL 5 BASIC23.07■■□□□ 1.28
MSH5O43196 BCR-201ENST00000305877 7082 ntAPPRIS P1 TSL 1 (best) BASIC23.07■■□□□ 1.28
MSH5O43196 FAM9A-202ENST00000543214 1544 ntAPPRIS P1 TSL 1 (best) BASIC23.07■■□□□ 1.28
MSH5O43196 MAFG-201ENST00000357736 5040 ntAPPRIS P1 TSL 1 (best) BASIC23.07■■□□□ 1.28
MSH5O43196 VGLL4-210ENST00000426568 1428 ntTSL 1 (best) BASIC23.07■■□□□ 1.28
MSH5O43196 PMEPA1-202ENST00000341744 4845 ntAPPRIS P1 TSL 1 (best) BASIC23.07■■□□□ 1.28
MSH5O43196 WNT2-201ENST00000265441 2907 ntAPPRIS P1 TSL 1 (best) BASIC23.06■■□□□ 1.28
MSH5O43196 OCSTAMP-201ENST00000279028 2043 ntAPPRIS P1 TSL 5 BASIC23.06■■□□□ 1.28
MSH5O43196 ATP6V1G2-205ENST00000303892 1588 ntAPPRIS P1 TSL 1 (best) BASIC23.06■■□□□ 1.28
MSH5O43196 CRYL1-202ENST00000382812 1581 ntTSL 1 (best) BASIC23.06■■□□□ 1.28
MSH5O43196 SLC27A2-201ENST00000267842 2394 ntAPPRIS P1 TSL 1 (best) BASIC23.06■■□□□ 1.28
MSH5O43196 EIF2B4-210ENST00000493344 1949 ntTSL 5 BASIC23.06■■□□□ 1.28
MSH5O43196 AC008393.1-201ENST00000499601 1454 ntTSL 1 (best) BASIC23.06■■□□□ 1.28
MSH5O43196 AP001476.1-201ENST00000451618 2198 ntTSL 2 BASIC23.06■■□□□ 1.28
MSH5O43196 ADGRA1-AS1-201ENST00000366099 3236 ntBASIC23.06■■□□□ 1.28
MSH5O43196 SURF4-209ENST00000618229 3200 ntTSL 2 BASIC23.06■■□□□ 1.28
MSH5O43196 COPS7B-206ENST00000410017 2051 ntTSL 3 BASIC23.06■■□□□ 1.28
MSH5O43196 AGK-211ENST00000629555 2765 ntTSL 5 BASIC23.06■■□□□ 1.28
MSH5O43196 RPL26L1-201ENST00000265100 722 ntAPPRIS P1 TSL 1 (best) BASIC23.06■■□□□ 1.28
MSH5O43196 TOR3A-201ENST00000352445 1182 ntTSL 1 (best) BASIC23.06■■□□□ 1.28
MSH5O43196 WDR53-203ENST00000429115 683 ntTSL 2 BASIC23.06■■□□□ 1.28
MSH5O43196 AC009947.1-201ENST00000444350 727 ntBASIC23.06■■□□□ 1.28
MSH5O43196 AC099063.2-201ENST00000446360 662 ntBASIC23.06■■□□□ 1.28
MSH5O43196 AC009245.1-201ENST00000456481 862 ntBASIC23.06■■□□□ 1.28
MSH5O43196 AC021146.11-201ENST00000503319 491 ntBASIC23.06■■□□□ 1.28
MSH5O43196 MSRA-206ENST00000521209 814 ntTSL 3 BASIC23.06■■□□□ 1.28
MSH5O43196 RPL26L1-206ENST00000521476 742 ntAPPRIS P1 TSL 2 BASIC23.06■■□□□ 1.28
MSH5O43196 ANO3-205ENST00000531646 1264 ntTSL 4 BASIC23.06■■□□□ 1.28
MSH5O43196 AC087894.2-201ENST00000541797 462 ntTSL 4 BASIC23.06■■□□□ 1.28
MSH5O43196 AC009269.2-201ENST00000559892 474 ntBASIC23.06■■□□□ 1.28
MSH5O43196 AC018845.1-201ENST00000564193 744 ntTSL 2 BASIC23.06■■□□□ 1.28
MSH5O43196 H3F3B-206ENST00000587560 551 ntAPPRIS P1 TSL 2 BASIC23.06■■□□□ 1.28
MSH5O43196 AC008403.2-204ENST00000600650 1006 ntTSL 3 BASIC23.06■■□□□ 1.28
MSH5O43196 AL589765.6-201ENST00000601909 549 ntBASIC23.06■■□□□ 1.28
MSH5O43196 AL355073.2-201ENST00000612106 557 ntBASIC23.06■■□□□ 1.28
MSH5O43196 AL139288.1-201ENST00000623748 933 ntBASIC23.06■■□□□ 1.28
MSH5O43196 AL158212.4-201ENST00000624062 1286 ntBASIC23.06■■□□□ 1.28
MSH5O43196 MCCC2-209ENST00000629193 1128 ntTSL 1 (best) BASIC23.06■■□□□ 1.28
MSH5O43196 AC107918.4-202ENST00000641623 219 ntBASIC23.06■■□□□ 1.28
MSH5O43196 AC119674.1-217ENST00000641942 1086 ntBASIC23.06■■□□□ 1.28
MSH5O43196 MRPL10-203ENST00000414011 1622 ntTSL 3 BASIC23.06■■□□□ 1.28
MSH5O43196 AP004609.1-201ENST00000498872 1646 ntTSL 1 (best) BASIC23.06■■□□□ 1.28
MSH5O43196 INTS11-249ENST00000618806 1523 ntTSL 2 BASIC23.06■■□□□ 1.28
MSH5O43196 CHRNE-201ENST00000293780 2455 ntAPPRIS P1 TSL 1 (best) BASIC23.06■■□□□ 1.28
MSH5O43196 COQ6-201ENST00000334571 2118 ntAPPRIS P1 TSL 1 (best) BASIC23.06■■□□□ 1.28
MSH5O43196 UNG-202ENST00000336865 2130 ntAPPRIS ALT2 TSL 1 (best) BASIC23.06■■□□□ 1.28
MSH5O43196 HARS-201ENST00000307633 1780 ntTSL 2 BASIC23.06■■□□□ 1.28
MSH5O43196 MUTYH-202ENST00000355498 1776 ntAPPRIS ALT2 TSL 1 (best) BASIC23.06■■□□□ 1.28
MSH5O43196 LINC01934-205ENST00000435411 1771 ntTSL 5 BASIC23.06■■□□□ 1.28
MSH5O43196 TSPAN17-209ENST00000515708 2361 ntAPPRIS P1 TSL 1 (best) BASIC23.06■■□□□ 1.28
MSH5O43196 ZNF764-202ENST00000395091 2970 ntAPPRIS ALT1 TSL 2 BASIC23.06■■□□□ 1.28
MSH5O43196 SLC12A9-215ENST00000540482 2269 ntTSL 2 BASIC23.06■■□□□ 1.28
MSH5O43196 PDCL3-201ENST00000264254 1337 ntAPPRIS P1 TSL 1 (best) BASIC23.06■■□□□ 1.28
MSH5O43196 RUNX1T1-234ENST00000521553 1346 ntTSL 1 (best) BASIC23.06■■□□□ 1.28
MSH5O43196 C8orf46-215ENST00000522977 1347 ntTSL 2 BASIC23.06■■□□□ 1.28
MSH5O43196 CNOT6-201ENST00000261951 6176 ntAPPRIS P1 TSL 5 BASIC23.06■■□□□ 1.28
MSH5O43196 LRCH1-201ENST00000311191 4710 ntAPPRIS ALT2 TSL 1 (best) BASIC23.06■■□□□ 1.28
MSH5O43196 TRPC3-202ENST00000379645 3548 ntAPPRIS ALT2 TSL 1 (best) BASIC23.05■■□□□ 1.28
MSH5O43196 VIPR1-217ENST00000543411 2681 ntTSL 2 BASIC23.05■■□□□ 1.28
MSH5O43196 HYAL1-202ENST00000320295 2324 ntAPPRIS P1 TSL 2 BASIC23.05■■□□□ 1.28
MSH5O43196 PPP1R3B-202ENST00000519699 2334 ntAPPRIS P1 TSL 2 BASIC23.05■■□□□ 1.28
MSH5O43196 NEK3-206ENST00000611833 2345 ntAPPRIS ALT2 TSL 5 BASIC23.05■■□□□ 1.28
MSH5O43196 TNFSF14-202ENST00000599359 1476 ntAPPRIS P1 TSL 1 (best) BASIC23.05■■□□□ 1.28
MSH5O43196 YY1AP1-210ENST00000368339 3073 ntAPPRIS ALT2 TSL 2 BASIC23.05■■□□□ 1.28
MSH5O43196 ZNF703-201ENST00000331569 3349 ntAPPRIS P1 TSL 1 (best) BASIC23.05■■□□□ 1.28
MSH5O43196 LBX2-AS1-201ENST00000548978 1852 ntTSL 3 BASIC23.05■■□□□ 1.28
MSH5O43196 CBX2-201ENST00000269399 1061 ntTSL 1 (best) BASIC23.05■■□□□ 1.28
MSH5O43196 BCCIP-201ENST00000278100 1236 ntAPPRIS P1 TSL 1 (best) BASIC23.05■■□□□ 1.28
MSH5O43196 HELT-201ENST00000338875 1008 ntTSL 1 (best) BASIC23.05■■□□□ 1.28
MSH5O43196 HSD17B8-203ENST00000374662 990 ntAPPRIS P1 TSL 1 (best) BASIC23.05■■□□□ 1.28
MSH5O43196 TMEM213-201ENST00000397602 1153 ntAPPRIS ALT2 TSL 1 (best) BASIC23.05■■□□□ 1.28
MSH5O43196 FAM8A3P-201ENST00000427218 844 ntBASIC23.05■■□□□ 1.28
MSH5O43196 DGUOK-AS1-202ENST00000439192 563 ntTSL 2 BASIC23.05■■□□□ 1.28
MSH5O43196 MTCL1P1-201ENST00000446207 792 ntBASIC23.05■■□□□ 1.28
Retrieved 100 of 98,524 protein–RNA pairs in 27.7 ms