Protein–RNA interactions for Protein: H3BMG3

SMKR1, Small lysine-rich protein 1, humanhuman

Predictions only

Length 65 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SMKR1H3BMG3 FADS1-201ENST00000350997 4525 ntAPPRIS P1 TSL 1 (best) BASIC12.24□□□□□ -0.45
SMKR1H3BMG3 KIF17-201ENST00000247986 3969 ntAPPRIS P3 TSL 1 (best) BASIC12.24□□□□□ -0.45
SMKR1H3BMG3 GPR137C-201ENST00000321662 3888 ntAPPRIS P1 TSL 1 (best) BASIC12.24□□□□□ -0.45
SMKR1H3BMG3 MTRF1L-201ENST00000367230 3431 ntTSL 1 (best) BASIC12.24□□□□□ -0.45
SMKR1H3BMG3 KIAA1841-201ENST00000295031 3116 ntTSL 1 (best) BASIC12.24□□□□□ -0.45
SMKR1H3BMG3 LENG8-209ENST00000616932 2825 ntAPPRIS ALT2 TSL 5 BASIC12.24□□□□□ -0.45
SMKR1H3BMG3 CACFD1-207ENST00000542192 2754 ntTSL 2 BASIC12.24□□□□□ -0.45
SMKR1H3BMG3 GLS2-201ENST00000311966 2623 ntAPPRIS P1 TSL 1 (best) BASIC12.24□□□□□ -0.45
SMKR1H3BMG3 CREB3L3-201ENST00000078445 2618 ntAPPRIS P3 TSL 1 (best) BASIC12.24□□□□□ -0.45
SMKR1H3BMG3 HOXD3-202ENST00000410016 2384 ntAPPRIS P1 TSL 5 BASIC12.23□□□□□ -0.45
SMKR1H3BMG3 ATP6AP2-217ENST00000636580 2337 ntAPPRIS P2 TSL 1 (best) BASIC12.23□□□□□ -0.45
SMKR1H3BMG3 TBRG4-203ENST00000395655 2225 ntTSL 2 BASIC12.23□□□□□ -0.45
SMKR1H3BMG3 MANSC1-201ENST00000396349 2220 ntTSL 2 BASIC12.23□□□□□ -0.45
SMKR1H3BMG3 RAP1GDS1-203ENST00000380158 2085 ntTSL 1 (best) BASIC12.23□□□□□ -0.45
SMKR1H3BMG3 RASGEF1C-206ENST00000522500 2055 ntTSL 2 BASIC12.23□□□□□ -0.45
SMKR1H3BMG3 ADAD1-201ENST00000296513 1961 ntAPPRIS P1 TSL 2 BASIC12.23□□□□□ -0.45
SMKR1H3BMG3 C2orf54-203ENST00000402775 1958 ntAPPRIS ALT2 TSL 2 BASIC12.23□□□□□ -0.45
SMKR1H3BMG3 HS6ST2-201ENST00000370833 1938 ntTSL 5 BASIC12.23□□□□□ -0.45
SMKR1H3BMG3 SUCO-210ENST00000616058 5495 ntTSL 1 (best) BASIC12.23□□□□□ -0.45
SMKR1H3BMG3 GDF11-201ENST00000257868 8657 ntAPPRIS P2 TSL 1 (best) BASIC12.23□□□□□ -0.45
SMKR1H3BMG3 PHF14-215ENST00000634607 3407 ntAPPRIS P1 TSL 5 BASIC12.23□□□□□ -0.45
SMKR1H3BMG3 ASB7-202ENST00000343276 1694 ntTSL 1 (best) BASIC12.23□□□□□ -0.45
SMKR1H3BMG3 KCTD14-201ENST00000353172 1691 ntAPPRIS P3 TSL 1 (best) BASIC12.23□□□□□ -0.45
SMKR1H3BMG3 PWP2-201ENST00000291576 3297 ntAPPRIS P1 TSL 1 (best) BASIC12.23□□□□□ -0.45
SMKR1H3BMG3 NRN1-201ENST00000244766 1624 ntAPPRIS P1 TSL 1 (best) BASIC12.23□□□□□ -0.45
SMKR1H3BMG3 GHRHR-201ENST00000326139 1602 ntAPPRIS P1 TSL 1 (best) BASIC12.23□□□□□ -0.45
SMKR1H3BMG3 CD9-203ENST00000382518 1556 ntAPPRIS P1 TSL 5 BASIC12.23□□□□□ -0.45
SMKR1H3BMG3 C1RL-210ENST00000544702 1569 ntTSL 1 (best) BASIC12.23□□□□□ -0.45
SMKR1H3BMG3 CLDN7-201ENST00000360325 1542 ntAPPRIS P1 TSL 1 (best) BASIC12.23□□□□□ -0.45
SMKR1H3BMG3 WDR18-204ENST00000587001 1465 ntTSL 5 BASIC12.23□□□□□ -0.45
SMKR1H3BMG3 HNRNPUL1-220ENST00000602130 2932 ntAPPRIS ALT2 TSL 1 (best) BASIC12.23□□□□□ -0.45
SMKR1H3BMG3 C1QTNF1-209ENST00000581774 1368 ntAPPRIS P1 TSL 1 (best) BASIC12.23□□□□□ -0.45
SMKR1H3BMG3 PPP3CA-207ENST00000512215 4007 ntTSL 1 (best) BASIC12.23□□□□□ -0.45
SMKR1H3BMG3 BEGAIN-201ENST00000355173 2674 ntTSL 1 (best) BASIC12.23□□□□□ -0.45
SMKR1H3BMG3 VPS37D-202ENST00000451519 1303 ntTSL 5 BASIC12.23□□□□□ -0.45
SMKR1H3BMG3 PRORSD1P-201ENST00000295112 541 ntBASIC12.23□□□□□ -0.45
SMKR1H3BMG3 PARK7-201ENST00000338639 949 ntAPPRIS P1 TSL 1 (best) BASIC12.23□□□□□ -0.45
SMKR1H3BMG3 CHTOP-202ENST00000368687 1094 ntTSL 1 (best) BASIC12.23□□□□□ -0.45
SMKR1H3BMG3 UNC5B-AS1-201ENST00000447119 647 ntTSL 2 BASIC12.23□□□□□ -0.45
SMKR1H3BMG3 ABHD11-207ENST00000458339 890 ntTSL 3 BASIC12.23□□□□□ -0.45
SMKR1H3BMG3 AC098829.1-201ENST00000502344 630 ntTSL 3 BASIC12.23□□□□□ -0.45
SMKR1H3BMG3 AC008610.1-201ENST00000504573 393 ntTSL 2 BASIC12.23□□□□□ -0.45
SMKR1H3BMG3 STK19B-204ENST00000512515 211 ntBASIC12.23□□□□□ -0.45
SMKR1H3BMG3 CNTD2-203ENST00000513948 787 ntAPPRIS ALT2 TSL 2 BASIC12.23□□□□□ -0.45
SMKR1H3BMG3 TNFRSF1B-204ENST00000536782 557 ntTSL 1 (best) BASIC12.23□□□□□ -0.45
SMKR1H3BMG3 AL132780.2-201ENST00000557615 1021 ntTSL 3 BASIC12.23□□□□□ -0.45
SMKR1H3BMG3 ZNF444P1-201ENST00000559497 298 ntBASIC12.23□□□□□ -0.45
SMKR1H3BMG3 AC100835.1-201ENST00000565737 498 ntTSL 5 BASIC12.23□□□□□ -0.45
SMKR1H3BMG3 PRORSD1P-203ENST00000579162 626 ntTSL 5 BASIC12.23□□□□□ -0.45
SMKR1H3BMG3 AC002094.1-201ENST00000591482 1050 ntTSL 2 BASIC12.23□□□□□ -0.45
SMKR1H3BMG3 MALAT1-215ENST00000619449 794 ntTSL 3 BASIC12.23□□□□□ -0.45
SMKR1H3BMG3 ITM2C-210ENST00000620962 501 ntBASIC12.23□□□□□ -0.45
SMKR1H3BMG3 AL023973.1-201ENST00000624619 620 ntBASIC12.23□□□□□ -0.45
SMKR1H3BMG3 UBE3A-227ENST00000638011 8742 ntAPPRIS ALT1 TSL 5 BASIC12.23□□□□□ -0.45
SMKR1H3BMG3 RALGDS-202ENST00000372050 3634 ntAPPRIS P3 TSL 1 (best) BASIC12.23□□□□□ -0.45
SMKR1H3BMG3 USP43-202ENST00000570475 3500 ntAPPRIS ALT2 TSL 1 (best) BASIC12.23□□□□□ -0.45
SMKR1H3BMG3 PAK4-208ENST00000599386 5735 ntTSL 1 (best) BASIC12.23□□□□□ -0.45
SMKR1H3BMG3 TEN1-CDK3-202ENST00000569284 3287 ntAPPRIS P1 TSL 2 BASIC12.23□□□□□ -0.45
SMKR1H3BMG3 TOPAZ1-201ENST00000309765 5334 ntAPPRIS P1 TSL 5 BASIC12.23□□□□□ -0.45
SMKR1H3BMG3 GNE-202ENST00000396594 5298 ntTSL 1 (best) BASIC12.23□□□□□ -0.45
SMKR1H3BMG3 LINC02495-201ENST00000508601 4167 ntTSL 2 BASIC12.23□□□□□ -0.45
SMKR1H3BMG3 RAB9A-202ENST00000464506 2039 ntAPPRIS P1 TSL 1 (best) BASIC12.23□□□□□ -0.45
SMKR1H3BMG3 LINC01529-205ENST00000637365 2000 ntTSL 5 BASIC12.23□□□□□ -0.45
SMKR1H3BMG3 MYLK2-202ENST00000375994 2956 ntAPPRIS P1 TSL 1 (best) BASIC12.23□□□□□ -0.45
SMKR1H3BMG3 AP005117.1-202ENST00000581724 1908 ntBASIC12.23□□□□□ -0.45
SMKR1H3BMG3 RHPN1-201ENST00000289013 3683 ntAPPRIS P1 TSL 1 (best) BASIC12.23□□□□□ -0.45
SMKR1H3BMG3 AP003680.1-201ENST00000598970 3660 ntBASIC12.23□□□□□ -0.45
SMKR1H3BMG3 APLNR-203ENST00000611099 1789 ntAPPRIS P1 TSL 1 (best) BASIC12.23□□□□□ -0.45
SMKR1H3BMG3 ANKRD23-201ENST00000318357 2597 ntAPPRIS P1 TSL 1 (best) BASIC12.23□□□□□ -0.45
SMKR1H3BMG3 WARS-232ENST00000556645 2508 ntTSL 5 BASIC12.22□□□□□ -0.45
SMKR1H3BMG3 AC099063.4-201ENST00000641099 1602 ntBASIC12.22□□□□□ -0.45
SMKR1H3BMG3 NRSN1-203ENST00000378478 2408 ntAPPRIS P1 TSL 1 (best) BASIC12.22□□□□□ -0.45
SMKR1H3BMG3 ZFR2-201ENST00000262961 4756 ntAPPRIS P1 TSL 5 BASIC12.22□□□□□ -0.45
SMKR1H3BMG3 JAKMIP1-204ENST00000409831 2371 ntAPPRIS P1 TSL 2 BASIC12.22□□□□□ -0.45
SMKR1H3BMG3 RGS19-202ENST00000395042 1593 ntAPPRIS P1 TSL 1 (best) BASIC12.22□□□□□ -0.45
SMKR1H3BMG3 ABLIM3-206ENST00000506113 4569 ntAPPRIS P1 TSL 1 (best) BASIC12.22□□□□□ -0.45
SMKR1H3BMG3 TBX5-203ENST00000405440 2203 ntAPPRIS P1 TSL 1 (best) BASIC12.22□□□□□ -0.45
SMKR1H3BMG3 TBXAS1-201ENST00000336425 2185 ntAPPRIS P1 TSL 1 (best) BASIC12.22□□□□□ -0.45
SMKR1H3BMG3 TK2-221ENST00000620035 5060 ntTSL 2 BASIC12.22□□□□□ -0.45
SMKR1H3BMG3 KCNQ2-201ENST00000344425 1426 ntTSL 1 (best) BASIC12.22□□□□□ -0.45
SMKR1H3BMG3 YIF1B-204ENST00000392124 1404 ntTSL 1 (best) BASIC12.22□□□□□ -0.45
SMKR1H3BMG3 ASAH1-231ENST00000636577 2129 ntTSL 5 BASIC12.22□□□□□ -0.45
SMKR1H3BMG3 ZNF397-204ENST00000585800 2046 ntTSL 5 BASIC12.22□□□□□ -0.45
SMKR1H3BMG3 TIMP3-201ENST00000266085 4603 ntAPPRIS P1 TSL 1 (best) BASIC12.22□□□□□ -0.45
SMKR1H3BMG3 ZNF197-203ENST00000383744 1989 ntTSL 1 (best) BASIC12.22□□□□□ -0.45
SMKR1H3BMG3 ANKMY2-201ENST00000306999 2555 ntAPPRIS P1 TSL 1 (best) BASIC12.22□□□□□ -0.45
SMKR1H3BMG3 SBSN-201ENST00000452271 1945 ntAPPRIS ALT2 TSL 1 (best) BASIC12.22□□□□□ -0.45
SMKR1H3BMG3 SLC34A1-204ENST00000512593 1912 ntTSL 2 BASIC12.22□□□□□ -0.45
SMKR1H3BMG3 MRPS34-201ENST00000177742 1040 ntTSL 1 (best) BASIC12.22□□□□□ -0.45
SMKR1H3BMG3 HLA-F-217ENST00000334668 1283 ntAPPRIS ALT2 BASIC12.22□□□□□ -0.45
SMKR1H3BMG3 NKAIN4-201ENST00000370307 793 ntTSL 5 BASIC12.22□□□□□ -0.45
SMKR1H3BMG3 CACYBP-202ENST00000405362 1059 ntTSL 5 BASIC12.22□□□□□ -0.45
SMKR1H3BMG3 LINC00620-201ENST00000419618 996 ntTSL 1 (best) BASIC12.22□□□□□ -0.45
SMKR1H3BMG3 HLA-F-220ENST00000434407 884 ntBASIC12.22□□□□□ -0.45
SMKR1H3BMG3 DMKN-215ENST00000451297 1111 ntAPPRIS ALT2 TSL 1 (best) BASIC12.22□□□□□ -0.45
SMKR1H3BMG3 AC098590.1-201ENST00000468126 897 ntBASIC12.22□□□□□ -0.45
SMKR1H3BMG3 PDCD6-206ENST00000507528 1088 ntAPPRIS ALT1 TSL 1 (best) BASIC12.22□□□□□ -0.45
SMKR1H3BMG3 PDCD6-207ENST00000509581 1156 ntTSL 1 (best) BASIC12.22□□□□□ -0.45
SMKR1H3BMG3 AC021739.3-201ENST00000557908 855 ntTSL 2 BASIC12.22□□□□□ -0.45
SMKR1H3BMG3 MIR4785-201ENST00000585005 73 ntBASIC12.22□□□□□ -0.45
Retrieved 100 of 98,524 protein–RNA pairs in 45.5 ms