Protein–RNA interactions for Protein: Q9Y261

FOXA2, Hepatocyte nuclear factor 3-beta, humanhuman

Predicted RBP Predictions only

Length 457 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
FOXA2Q9Y261 GPAT3-208ENST00000611707 2633 ntAPPRIS P1 TSL 5 BASIC13.51□□□□□ -0.25
FOXA2Q9Y261 CCT6A-202ENST00000335503 2529 ntTSL 5 BASIC13.51□□□□□ -0.25
FOXA2Q9Y261 LTF-203ENST00000426532 2494 ntTSL 2 BASIC13.51□□□□□ -0.25
FOXA2Q9Y261 SLC39A13-201ENST00000354884 2289 ntAPPRIS P1 TSL 1 (best) BASIC13.51□□□□□ -0.25
FOXA2Q9Y261 DLGAP1-220ENST00000581699 2258 ntTSL 2 BASIC13.51□□□□□ -0.25
FOXA2Q9Y261 RALYL-208ENST00000522455 2168 ntAPPRIS ALT2 TSL 2 BASIC13.51□□□□□ -0.25
FOXA2Q9Y261 ASAH1-231ENST00000636577 2129 ntTSL 5 BASIC13.51□□□□□ -0.25
FOXA2Q9Y261 EPHX2-201ENST00000380476 2064 ntTSL 2 BASIC13.51□□□□□ -0.25
FOXA2Q9Y261 C2orf54-203ENST00000402775 1958 ntAPPRIS ALT2 TSL 2 BASIC13.51□□□□□ -0.25
FOXA2Q9Y261 PRMT2-208ENST00000451211 1878 ntTSL 1 (best) BASIC13.51□□□□□ -0.25
FOXA2Q9Y261 RBPJ-204ENST00000348160 1752 ntAPPRIS ALT1 TSL 1 (best) BASIC13.51□□□□□ -0.25
FOXA2Q9Y261 AC068888.1-203ENST00000546566 1650 ntTSL 2 BASIC13.51□□□□□ -0.25
FOXA2Q9Y261 TRH-202ENST00000507066 1580 ntAPPRIS ALT1 TSL 5 BASIC13.51□□□□□ -0.25
FOXA2Q9Y261 GMPPA-204ENST00000373908 1501 ntAPPRIS P1 TSL 5 BASIC13.51□□□□□ -0.25
FOXA2Q9Y261 PSMC5-202ENST00000375812 1494 ntTSL 2 BASIC13.51□□□□□ -0.25
FOXA2Q9Y261 MOV10L1-201ENST00000262794 3960 ntAPPRIS P3 TSL 1 (best) BASIC13.51□□□□□ -0.25
FOXA2Q9Y261 PDCL3-201ENST00000264254 1337 ntAPPRIS P1 TSL 1 (best) BASIC13.51□□□□□ -0.25
FOXA2Q9Y261 PTHLH-203ENST00000395872 1318 ntAPPRIS ALT1 TSL 5 BASIC13.51□□□□□ -0.25
FOXA2Q9Y261 HNRNPDL-210ENST00000630827 1318 ntAPPRIS ALT2 TSL 5 BASIC13.51□□□□□ -0.25
FOXA2Q9Y261 NDUFA11-201ENST00000308961 539 ntAPPRIS P1 TSL 1 (best) BASIC13.51□□□□□ -0.25
FOXA2Q9Y261 LCE1F-201ENST00000334371 357 ntAPPRIS P1 BASIC13.51□□□□□ -0.25
FOXA2Q9Y261 DPM3-201ENST00000341298 486 ntAPPRIS P1 TSL 2 BASIC13.51□□□□□ -0.25
FOXA2Q9Y261 NFKBIB-202ENST00000392079 991 ntTSL 5 BASIC13.51□□□□□ -0.25
FOXA2Q9Y261 AL031284.1-201ENST00000419297 478 ntBASIC13.51□□□□□ -0.25
FOXA2Q9Y261 TCTN1-208ENST00000471804 718 ntTSL 3 BASIC13.51□□□□□ -0.25
FOXA2Q9Y261 CUTA-210ENST00000488034 769 ntAPPRIS ALT1 TSL 2 BASIC13.51□□□□□ -0.25
FOXA2Q9Y261 PENK-208ENST00000523051 772 ntTSL 5 BASIC13.51□□□□□ -0.25
FOXA2Q9Y261 LMX1B-203ENST00000526117 1195 ntTSL 1 (best) BASIC13.51□□□□□ -0.25
FOXA2Q9Y261 TRPC2-202ENST00000526541 1189 ntTSL 1 (best) BASIC13.51□□□□□ -0.25
FOXA2Q9Y261 AC105339.3-201ENST00000560043 636 ntBASIC13.51□□□□□ -0.25
FOXA2Q9Y261 MAP1LC3B-207ENST00000565788 625 ntTSL 2 BASIC13.51□□□□□ -0.25
FOXA2Q9Y261 IER2-202ENST00000587885 1291 ntAPPRIS P1 TSL 3 BASIC13.51□□□□□ -0.25
FOXA2Q9Y261 AC008878.4-201ENST00000602083 293 ntTSL 5 BASIC13.51□□□□□ -0.25
FOXA2Q9Y261 FAM215A-202ENST00000632077 792 ntBASIC13.51□□□□□ -0.25
FOXA2Q9Y261 UNC5D-203ENST00000416672 3532 ntAPPRIS ALT2 TSL 5 BASIC13.51□□□□□ -0.25
FOXA2Q9Y261 SUSD4-202ENST00000343846 3480 ntAPPRIS P1 TSL 2 BASIC13.51□□□□□ -0.25
FOXA2Q9Y261 TTBK1-201ENST00000259750 6932 ntAPPRIS P1 TSL 1 (best) BASIC13.51□□□□□ -0.25
FOXA2Q9Y261 SPATA18-202ENST00000419395 2816 ntTSL 2 BASIC13.51□□□□□ -0.25
FOXA2Q9Y261 LINC02199-201ENST00000506655 2702 ntBASIC13.51□□□□□ -0.25
FOXA2Q9Y261 NBPF15-202ENST00000488031 4535 ntAPPRIS P1 TSL 5 BASIC13.51□□□□□ -0.25
FOXA2Q9Y261 CARD14-202ENST00000570421 2607 ntTSL 1 (best) BASIC13.51□□□□□ -0.25
FOXA2Q9Y261 GFOD1-203ENST00000379287 8751 ntAPPRIS P1 TSL 1 (best) BASIC13.51□□□□□ -0.25
FOXA2Q9Y261 CLPTM1-203ENST00000546079 2342 ntTSL 2 BASIC13.51□□□□□ -0.25
FOXA2Q9Y261 SLC17A7-204ENST00000600601 2237 ntTSL 2 BASIC13.51□□□□□ -0.25
FOXA2Q9Y261 RPL3L-201ENST00000268661 2182 ntAPPRIS P1 TSL 1 (best) BASIC13.51□□□□□ -0.25
FOXA2Q9Y261 DNM2-202ENST00000359692 3588 ntAPPRIS P5 TSL 1 (best) BASIC13.51□□□□□ -0.25
FOXA2Q9Y261 SIGLEC10-205ENST00000439889 2126 ntTSL 1 (best) BASIC13.51□□□□□ -0.25
FOXA2Q9Y261 DZIP1L-204ENST00000469243 2107 ntAPPRIS ALT2 TSL 2 BASIC13.51□□□□□ -0.25
FOXA2Q9Y261 THNSL2-202ENST00000343544 2052 ntTSL 1 (best) BASIC13.51□□□□□ -0.25
FOXA2Q9Y261 KHNYN-202ENST00000553935 3359 ntAPPRIS P1 TSL 1 (best) BASIC13.51□□□□□ -0.25
FOXA2Q9Y261 SMIM13-202ENST00000416247 4688 ntAPPRIS P1 TSL 1 (best) BASIC13.51□□□□□ -0.25
FOXA2Q9Y261 UCKL1-203ENST00000369908 1954 ntAPPRIS P1 TSL 2 BASIC13.51□□□□□ -0.25
FOXA2Q9Y261 DUOXA2-201ENST00000323030 1760 ntAPPRIS P1 TSL 1 (best) BASIC13.5□□□□□ -0.25
FOXA2Q9Y261 TSNARE1-205ENST00000520166 1742 ntAPPRIS ALT2 TSL 1 (best) BASIC13.5□□□□□ -0.25
FOXA2Q9Y261 GGT3P-204ENST00000453783 1664 ntBASIC13.5□□□□□ -0.25
FOXA2Q9Y261 ARFGAP1-201ENST00000353546 2776 ntAPPRIS P4 TSL 1 (best) BASIC13.5□□□□□ -0.25
FOXA2Q9Y261 HLA-F-216ENST00000259951 1635 ntAPPRIS P4 BASIC13.5□□□□□ -0.25
FOXA2Q9Y261 NFKBIA-201ENST00000216797 1558 ntAPPRIS P1 TSL 1 (best) BASIC13.5□□□□□ -0.25
FOXA2Q9Y261 RCAN3-202ENST00000374395 6802 ntAPPRIS P1 TSL 1 (best) BASIC13.5□□□□□ -0.25
FOXA2Q9Y261 PCDHGA12-202ENST00000613314 2634 ntAPPRIS ALT2 BASIC13.5□□□□□ -0.25
FOXA2Q9Y261 DPF3-204ENST00000546183 1514 ntTSL 2 BASIC13.5□□□□□ -0.25
FOXA2Q9Y261 VPS54-201ENST00000272322 3463 ntAPPRIS P3 TSL 5 BASIC13.5□□□□□ -0.25
FOXA2Q9Y261 ACTRT2-201ENST00000378404 1421 ntAPPRIS P1 BASIC13.5□□□□□ -0.25
FOXA2Q9Y261 AIFM1-201ENST00000287295 2260 ntAPPRIS P4 TSL 1 (best) BASIC13.5□□□□□ -0.25
FOXA2Q9Y261 ARHGAP27-208ENST00000528384 2296 ntTSL 1 (best) BASIC13.5□□□□□ -0.25
FOXA2Q9Y261 RAB31-207ENST00000578921 4055 ntAPPRIS P1 TSL 1 (best) BASIC13.5□□□□□ -0.25
FOXA2Q9Y261 SLC5A6-203ENST00000408041 2230 ntAPPRIS P1 TSL 1 (best) BASIC13.5□□□□□ -0.25
FOXA2Q9Y261 RUSC1-201ENST00000292254 2163 ntAPPRIS P3 TSL 1 (best) BASIC13.5□□□□□ -0.25
FOXA2Q9Y261 NUCB1-202ENST00000407032 2158 ntAPPRIS P2 TSL 5 BASIC13.5□□□□□ -0.25
FOXA2Q9Y261 HBA2-201ENST00000251595 605 ntAPPRIS P1 TSL 1 (best) BASIC13.5□□□□□ -0.25
FOXA2Q9Y261 TFF3-201ENST00000291525 407 ntAPPRIS ALT2 TSL 5 BASIC13.5□□□□□ -0.25
FOXA2Q9Y261 SBSPON-201ENST00000297354 3801 ntAPPRIS P1 TSL 1 (best) BASIC13.5□□□□□ -0.25
FOXA2Q9Y261 AP4S1-202ENST00000313566 839 ntTSL 3 BASIC13.5□□□□□ -0.25
FOXA2Q9Y261 MRPL3P1-201ENST00000400109 1033 ntBASIC13.5□□□□□ -0.25
FOXA2Q9Y261 MMP24-AS1-201ENST00000424358 867 ntAPPRIS P1 TSL 2 BASIC13.5□□□□□ -0.25
FOXA2Q9Y261 AC009078.2-202ENST00000463353 338 ntBASIC13.5□□□□□ -0.25
FOXA2Q9Y261 AP000688.1-201ENST00000535199 1221 ntTSL 2 BASIC13.5□□□□□ -0.25
FOXA2Q9Y261 AC021066.1-201ENST00000549788 647 ntTSL 3 BASIC13.5□□□□□ -0.25
FOXA2Q9Y261 SLC25A6P4-201ENST00000586535 553 ntBASIC13.5□□□□□ -0.25
FOXA2Q9Y261 PRKN-208ENST00000610470 531 ntTSL 2 BASIC13.5□□□□□ -0.25
FOXA2Q9Y261 AC018529.2-201ENST00000612024 828 ntTSL 4 BASIC13.5□□□□□ -0.25
FOXA2Q9Y261 PRKN-209ENST00000612485 225 ntTSL 5 BASIC13.5□□□□□ -0.25
FOXA2Q9Y261 AC148477.8-201ENST00000624298 468 ntBASIC13.5□□□□□ -0.25
FOXA2Q9Y261 OPN5-206ENST00000638973 1090 ntTSL 5 BASIC13.5□□□□□ -0.25
FOXA2Q9Y261 FUT3-202ENST00000458379 2024 ntAPPRIS P1 TSL 1 (best) BASIC13.5□□□□□ -0.25
FOXA2Q9Y261 SCAF1-201ENST00000360565 4306 ntAPPRIS P2 TSL 2 BASIC13.5□□□□□ -0.25
FOXA2Q9Y261 GPS1-202ENST00000320548 1949 ntTSL 2 BASIC13.5□□□□□ -0.25
FOXA2Q9Y261 MAGEA2B-201ENST00000331220 1946 ntAPPRIS P1 TSL 2 BASIC13.5□□□□□ -0.25
FOXA2Q9Y261 YPEL3-203ENST00000562641 1941 ntTSL 3 BASIC13.5□□□□□ -0.25
FOXA2Q9Y261 POTEE-204ENST00000613282 1926 ntTSL 5 BASIC13.5□□□□□ -0.25
FOXA2Q9Y261 POTEI-202ENST00000615053 1926 ntTSL 5 BASIC13.5□□□□□ -0.25
FOXA2Q9Y261 PKD1P5-201ENST00000532415 10291 ntBASIC13.5□□□□□ -0.25
FOXA2Q9Y261 KCNG3-201ENST00000306078 3824 ntAPPRIS P3 TSL 1 (best) BASIC13.5□□□□□ -0.25
FOXA2Q9Y261 ZNF408-201ENST00000311764 2442 ntAPPRIS P1 TSL 1 (best) BASIC13.5□□□□□ -0.25
FOXA2Q9Y261 SLC44A1-203ENST00000374724 3088 ntAPPRIS ALT1 TSL 5 BASIC13.5□□□□□ -0.25
FOXA2Q9Y261 COL2A1-202ENST00000380518 5071 ntAPPRIS ALT1 TSL 1 (best) BASIC13.5□□□□□ -0.25
FOXA2Q9Y261 KLF10-202ENST00000395884 3659 ntTSL 1 (best) BASIC13.5□□□□□ -0.25
FOXA2Q9Y261 DDX42-208ENST00000578681 4337 ntAPPRIS P1 TSL 1 (best) BASIC13.5□□□□□ -0.25
FOXA2Q9Y261 PDK1-203ENST00000410055 2990 ntAPPRIS P3 TSL 1 (best) BASIC13.5□□□□□ -0.25
FOXA2Q9Y261 SNRK-204ENST00000454177 2961 ntAPPRIS P1 TSL 2 BASIC13.5□□□□□ -0.25
Retrieved 100 of 98,524 protein–RNA pairs in 60.7 ms