Protein–RNA interactions for Protein: Q92889

ERCC4, DNA repair endonuclease XPF, humanhuman

Predicted RBP Predictions only

Length 916 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ERCC4Q92889 ARID5A-201ENST00000357485 2188 ntAPPRIS P1 TSL 1 (best) BASIC18.96■□□□□ 0.63
ERCC4Q92889 NIM1K-201ENST00000326035 2313 ntAPPRIS P1 TSL 1 (best) BASIC18.96■□□□□ 0.63
ERCC4Q92889 AL021920.2-201ENST00000624828 1351 ntBASIC18.96■□□□□ 0.63
ERCC4Q92889 AC005920.1-201ENST00000501718 2054 ntTSL 2 BASIC18.96■□□□□ 0.63
ERCC4Q92889 KRT35-202ENST00000393989 1670 ntAPPRIS P1 TSL 5 BASIC18.96■□□□□ 0.63
ERCC4Q92889 EPHA8-201ENST00000166244 4943 ntAPPRIS P1 TSL 2 BASIC18.96■□□□□ 0.63
ERCC4Q92889 PCSK4-201ENST00000300954 2661 ntAPPRIS P1 TSL 1 (best) BASIC18.96■□□□□ 0.63
ERCC4Q92889 CST3-202ENST00000398409 832 ntAPPRIS P1 TSL 3 BASIC18.96■□□□□ 0.63
ERCC4Q92889 AC051649.1-201ENST00000509204 330 ntTSL 3 BASIC18.96■□□□□ 0.63
ERCC4Q92889 FSTL3-206ENST00000592947 2144 ntTSL 1 (best) BASIC18.96■□□□□ 0.63
ERCC4Q92889 TXNDC12-205ENST00000610127 806 ntTSL 2 BASIC18.96■□□□□ 0.63
ERCC4Q92889 LTBR-201ENST00000228918 2260 ntAPPRIS P3 TSL 1 (best) BASIC18.96■□□□□ 0.63
ERCC4Q92889 ABHD10-201ENST00000273359 2590 ntAPPRIS P1 TSL 1 (best) BASIC18.96■□□□□ 0.63
ERCC4Q92889 PPP1R26-205ENST00000605286 4744 ntAPPRIS P1 TSL 3 BASIC18.96■□□□□ 0.63
ERCC4Q92889 WLS-202ENST00000354777 2037 ntTSL 1 (best) BASIC18.96■□□□□ 0.63
ERCC4Q92889 AC083864.1-201ENST00000381493 1497 ntTSL 1 (best) BASIC18.96■□□□□ 0.63
ERCC4Q92889 AC006277.1-201ENST00000624348 1610 ntBASIC18.96■□□□□ 0.63
ERCC4Q92889 DNM1-208ENST00000486160 3181 ntAPPRIS ALT1 TSL 1 (best) BASIC18.95■□□□□ 0.62
ERCC4Q92889 HNRNPLL-212ENST00000608859 3035 ntTSL 5 BASIC18.95■□□□□ 0.62
ERCC4Q92889 LRRC57-204ENST00000563454 2407 ntAPPRIS P1 TSL 2 BASIC18.95■□□□□ 0.62
ERCC4Q92889 AL136309.2-201ENST00000427049 2277 ntTSL 2 BASIC18.95■□□□□ 0.62
ERCC4Q92889 TSR2-201ENST00000375151 1534 ntAPPRIS P1 TSL 1 (best) BASIC18.95■□□□□ 0.62
ERCC4Q92889 PCDH1-203ENST00000394536 3827 ntAPPRIS ALT2 TSL 1 (best) BASIC18.95■□□□□ 0.62
ERCC4Q92889 TJP1-201ENST00000346128 7950 ntAPPRIS P3 TSL 1 (best) BASIC18.95■□□□□ 0.62
ERCC4Q92889 TMEM263-201ENST00000280756 3362 ntAPPRIS P1 TSL 1 (best) BASIC18.95■□□□□ 0.62
ERCC4Q92889 KCNJ12-201ENST00000331718 2198 ntAPPRIS P1 TSL 1 (best) BASIC18.95■□□□□ 0.62
ERCC4Q92889 CIAPIN1-209ENST00000567518 2016 ntTSL 1 (best) BASIC18.95■□□□□ 0.62
ERCC4Q92889 ELMSAN1-201ENST00000286523 8091 ntAPPRIS P2 TSL 1 (best) BASIC18.95■□□□□ 0.62
ERCC4Q92889 PAFAH1B3-201ENST00000262890 1003 ntAPPRIS P1 TSL 1 (best) BASIC18.95■□□□□ 0.62
ERCC4Q92889 EDN3-203ENST00000371025 1153 ntAPPRIS ALT2 TSL 1 (best) BASIC18.95■□□□□ 0.62
ERCC4Q92889 C6orf48-203ENST00000375638 847 ntAPPRIS P1 TSL 2 BASIC18.95■□□□□ 0.62
ERCC4Q92889 C6orf48-207ENST00000375642 962 ntAPPRIS P1 TSL 2 BASIC18.95■□□□□ 0.62
ERCC4Q92889 BLOC1S1-204ENST00000549147 1229 ntTSL 1 (best) BASIC18.95■□□□□ 0.62
ERCC4Q92889 CHRNB1-207ENST00000575379 1095 ntTSL 2 BASIC18.95■□□□□ 0.62
ERCC4Q92889 AC138207.7-201ENST00000584499 668 ntTSL 5 BASIC18.95■□□□□ 0.62
ERCC4Q92889 SRSF1-209ENST00000585096 568 ntTSL 4 BASIC18.95■□□□□ 0.62
ERCC4Q92889 APP-204ENST00000357903 3543 ntAPPRIS ALT2 TSL 1 (best) BASIC18.95■□□□□ 0.62
ERCC4Q92889 HOXB3-205ENST00000470495 4208 ntAPPRIS P1 TSL 1 (best) BASIC18.95■□□□□ 0.62
ERCC4Q92889 CPEB2-AS1-201ENST00000500394 1630 ntTSL 1 (best) BASIC18.95■□□□□ 0.62
ERCC4Q92889 CAMTA1-201ENST00000303635 8444 ntAPPRIS P1 TSL 1 (best) BASIC18.95■□□□□ 0.62
ERCC4Q92889 IGHM-202ENST00000637539 1683 ntAPPRIS P5 BASIC18.95■□□□□ 0.62
ERCC4Q92889 NBPF15-202ENST00000488031 4535 ntAPPRIS P1 TSL 5 BASIC18.95■□□□□ 0.62
ERCC4Q92889 NR2C1-201ENST00000330677 2014 ntTSL 5 BASIC18.95■□□□□ 0.62
ERCC4Q92889 IRAK1-204ENST00000393687 2049 ntTSL 1 (best) BASIC18.95■□□□□ 0.62
ERCC4Q92889 GDF5-201ENST00000374369 2383 ntAPPRIS P1 TSL 1 (best) BASIC18.95■□□□□ 0.62
ERCC4Q92889 SPCS2-201ENST00000263672 2708 ntAPPRIS P2 TSL 1 (best) BASIC18.94■□□□□ 0.62
ERCC4Q92889 MANSC1-201ENST00000396349 2220 ntTSL 2 BASIC18.94■□□□□ 0.62
ERCC4Q92889 PDXK-202ENST00000327574 2583 ntTSL 2 BASIC18.94■□□□□ 0.62
ERCC4Q92889 AMZ2-203ENST00000392720 1378 ntAPPRIS P1 TSL 1 (best) BASIC18.94■□□□□ 0.62
ERCC4Q92889 AC005329.3-201ENST00000626781 1366 ntTSL 5 BASIC18.94■□□□□ 0.62
ERCC4Q92889 ICA1L-201ENST00000358299 3457 ntAPPRIS P1 TSL 2 BASIC18.94■□□□□ 0.62
ERCC4Q92889 MAGEA2B-201ENST00000331220 1946 ntAPPRIS P1 TSL 2 BASIC18.94■□□□□ 0.62
ERCC4Q92889 PTPN5-202ENST00000396166 2299 ntTSL 2 BASIC18.94■□□□□ 0.62
ERCC4Q92889 TBC1D9B-201ENST00000355235 5119 ntAPPRIS P3 TSL 5 BASIC18.94■□□□□ 0.62
ERCC4Q92889 PRPF31-201ENST00000321030 2126 ntAPPRIS P1 TSL 1 (best) BASIC18.94■□□□□ 0.62
ERCC4Q92889 SIGLEC10-205ENST00000439889 2126 ntTSL 1 (best) BASIC18.94■□□□□ 0.62
ERCC4Q92889 RBPJ-204ENST00000348160 1752 ntAPPRIS ALT1 TSL 1 (best) BASIC18.94■□□□□ 0.62
ERCC4Q92889 PPEF2-207ENST00000621010 1797 ntTSL 1 (best) BASIC18.94■□□□□ 0.62
ERCC4Q92889 TTBK1-201ENST00000259750 6932 ntAPPRIS P1 TSL 1 (best) BASIC18.94■□□□□ 0.62
ERCC4Q92889 IRF3-202ENST00000377135 1442 ntTSL 1 (best) BASIC18.94■□□□□ 0.62
ERCC4Q92889 GLMP-201ENST00000362007 1604 ntAPPRIS P3 TSL 1 (best) BASIC18.94■□□□□ 0.62
ERCC4Q92889 RBCK1-206ENST00000400247 790 ntTSL 2 BASIC18.94■□□□□ 0.62
ERCC4Q92889 NABP1-203ENST00000409510 843 ntTSL 5 BASIC18.94■□□□□ 0.62
ERCC4Q92889 CBR1-203ENST00000439427 1024 ntTSL 1 (best) BASIC18.94■□□□□ 0.62
ERCC4Q92889 KRTCAP3-207ENST00000543753 956 ntAPPRIS P1 TSL 5 BASIC18.94■□□□□ 0.62
ERCC4Q92889 AC127496.4-201ENST00000571591 549 ntTSL 4 BASIC18.94■□□□□ 0.62
ERCC4Q92889 AC091076.1-201ENST00000610741 619 ntBASIC18.94■□□□□ 0.62
ERCC4Q92889 ANKMY2-206ENST00000628652 1270 ntTSL 5 BASIC18.94■□□□□ 0.62
ERCC4Q92889 DDX5-201ENST00000225792 2554 ntAPPRIS P1 TSL 1 (best) BASIC18.94■□□□□ 0.62
ERCC4Q92889 KHK-202ENST00000260599 2411 ntAPPRIS ALT1 TSL 1 (best) BASIC18.94■□□□□ 0.62
ERCC4Q92889 ZNF671-201ENST00000317398 2431 ntAPPRIS P1 TSL 1 (best) BASIC18.94■□□□□ 0.62
ERCC4Q92889 DNAAF5-201ENST00000297440 3410 ntAPPRIS P2 TSL 1 (best) BASIC18.94■□□□□ 0.62
ERCC4Q92889 HNF1A-215ENST00000615446 2344 ntTSL 5 BASIC18.94■□□□□ 0.62
ERCC4Q92889 CCT6A-202ENST00000335503 2529 ntTSL 5 BASIC18.94■□□□□ 0.62
ERCC4Q92889 LMNB2-201ENST00000325327 4671 ntAPPRIS P1 TSL 1 (best) BASIC18.94■□□□□ 0.62
ERCC4Q92889 AC063926.3-201ENST00000624734 5658 ntBASIC18.94■□□□□ 0.62
ERCC4Q92889 NFIC-210ENST00000590282 1558 ntTSL 2 BASIC18.93■□□□□ 0.62
ERCC4Q92889 P2RX5-TAX1BP3-201ENST00000550383 5905 ntAPPRIS P1 TSL 2 BASIC18.93■□□□□ 0.62
ERCC4Q92889 AC010491.1-201ENST00000563101 2797 ntBASIC18.93■□□□□ 0.62
ERCC4Q92889 PRPF40B-201ENST00000261897 3602 ntAPPRIS ALT2 TSL 1 (best) BASIC18.93■□□□□ 0.62
ERCC4Q92889 COL26A1-201ENST00000313669 3033 ntAPPRIS P2 TSL 1 (best) BASIC18.93■□□□□ 0.62
ERCC4Q92889 ARHGAP5-205ENST00000433497 3047 ntTSL 1 (best) BASIC18.93■□□□□ 0.62
ERCC4Q92889 TBRG4-203ENST00000395655 2225 ntTSL 2 BASIC18.93■□□□□ 0.62
ERCC4Q92889 SLC5A6-203ENST00000408041 2230 ntAPPRIS P1 TSL 1 (best) BASIC18.93■□□□□ 0.62
ERCC4Q92889 TSPAN4-205ENST00000397406 1426 ntAPPRIS P1 TSL 1 (best) BASIC18.93■□□□□ 0.62
ERCC4Q92889 ZNF496-201ENST00000294753 5336 ntAPPRIS P1 TSL 1 (best) BASIC18.93■□□□□ 0.62
ERCC4Q92889 ME2-201ENST00000321341 9415 ntAPPRIS P1 TSL 1 (best) BASIC18.93■□□□□ 0.62
ERCC4Q92889 IQSEC3-203ENST00000538872 7094 ntAPPRIS ALT2 TSL 5 BASIC18.93■□□□□ 0.62
ERCC4Q92889 SCP2-213ENST00000528311 1896 ntTSL 2 BASIC18.93■□□□□ 0.62
ERCC4Q92889 IER2-203ENST00000588173 2934 ntAPPRIS P1 BASIC18.93■□□□□ 0.62
ERCC4Q92889 VIPR2-202ENST00000377633 1491 ntTSL 2 BASIC18.93■□□□□ 0.62
ERCC4Q92889 BOLA2B-201ENST00000305321 1012 ntAPPRIS P1 TSL 1 (best) BASIC18.93■□□□□ 0.62
ERCC4Q92889 BOLA2-201ENST00000330978 1012 ntAPPRIS P1 TSL 1 (best) BASIC18.93■□□□□ 0.62
ERCC4Q92889 AL645608.6-201ENST00000418300 402 ntTSL 3 BASIC18.93■□□□□ 0.62
ERCC4Q92889 PHGR1-201ENST00000448599 436 ntAPPRIS P1 TSL 5 BASIC18.93■□□□□ 0.62
ERCC4Q92889 ZNF346-205ENST00000506693 1276 ntTSL 2 BASIC18.93■□□□□ 0.62
ERCC4Q92889 AC020934.1-201ENST00000588469 739 ntTSL 3 BASIC18.93■□□□□ 0.62
ERCC4Q92889 REXO2-220ENST00000611665 1158 ntAPPRIS P1 TSL 1 (best) BASIC18.93■□□□□ 0.62
ERCC4Q92889 Metazoa_SRP.33-201ENST00000613468 285 ntBASIC18.93■□□□□ 0.62
ERCC4Q92889 TP53I11-223ENST00000627720 195 ntTSL 5 BASIC18.93■□□□□ 0.62
Retrieved 100 of 98,524 protein–RNA pairs in 24.3 ms