Protein–RNA interactions for Protein: Q7Z6J0

SH3RF1, E3 ubiquitin-protein ligase SH3RF1, humanhuman

Predictions only

Length 888 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SH3RF1Q7Z6J0 RNF24-204ENST00000545616 1128 ntTSL 1 (best) BASIC19.04■□□□□ 0.64
SH3RF1Q7Z6J0 RPL28-209ENST00000560055 670 ntTSL 3 BASIC19.04■□□□□ 0.64
SH3RF1Q7Z6J0 LINC02560-201ENST00000596379 459 ntBASIC19.04■□□□□ 0.64
SH3RF1Q7Z6J0 AC005391.1-201ENST00000613285 341 ntTSL 3 BASIC19.04■□□□□ 0.64
SH3RF1Q7Z6J0 AC091980.2-201ENST00000619056 2775 ntAPPRIS P1 BASIC19.04■□□□□ 0.64
SH3RF1Q7Z6J0 GUCY1B3-206ENST00000507146 2709 ntTSL 1 (best) BASIC19.04■□□□□ 0.64
SH3RF1Q7Z6J0 ARL14EP-201ENST00000282032 2430 ntAPPRIS P1 TSL 1 (best) BASIC19.04■□□□□ 0.64
SH3RF1Q7Z6J0 HDAC8-206ENST00000373571 2133 ntTSL 5 BASIC19.04■□□□□ 0.64
SH3RF1Q7Z6J0 C12orf40-202ENST00000405531 1656 ntAPPRIS ALT2 TSL 1 (best) BASIC19.04■□□□□ 0.64
SH3RF1Q7Z6J0 CCDC177-201ENST00000599174 4131 ntAPPRIS P1 TSL 3 BASIC19.04■□□□□ 0.64
SH3RF1Q7Z6J0 CLIP2-202ENST00000361545 5445 ntTSL 1 (best) BASIC19.04■□□□□ 0.64
SH3RF1Q7Z6J0 RAN-212ENST00000543796 2661 ntAPPRIS P1 TSL 1 (best) BASIC19.04■□□□□ 0.64
SH3RF1Q7Z6J0 FERMT2-203ENST00000395631 3369 ntAPPRIS P1 TSL 1 (best) BASIC19.04■□□□□ 0.64
SH3RF1Q7Z6J0 MFSD1-202ENST00000392813 2244 ntTSL 2 BASIC19.04■□□□□ 0.64
SH3RF1Q7Z6J0 SARS2-201ENST00000221431 2057 ntAPPRIS P2 TSL 1 (best) BASIC19.04■□□□□ 0.64
SH3RF1Q7Z6J0 CCDC43-202ENST00000457422 2058 ntTSL 1 (best) BASIC19.04■□□□□ 0.64
SH3RF1Q7Z6J0 DNAJA3-201ENST00000262375 2763 ntAPPRIS P3 TSL 1 (best) BASIC19.04■□□□□ 0.64
SH3RF1Q7Z6J0 CETN1-201ENST00000327228 1758 ntAPPRIS P1 BASIC19.04■□□□□ 0.64
SH3RF1Q7Z6J0 NFASC-205ENST00000403080 2462 ntTSL 2 BASIC19.03■□□□□ 0.64
SH3RF1Q7Z6J0 CKMT2-202ENST00000424301 1637 ntAPPRIS P1 TSL 1 (best) BASIC19.03■□□□□ 0.64
SH3RF1Q7Z6J0 CLN3-229ENST00000567963 1452 ntTSL 5 BASIC19.03■□□□□ 0.64
SH3RF1Q7Z6J0 FOXRED2-203ENST00000397223 2184 ntAPPRIS P1 TSL 1 (best) BASIC19.03■□□□□ 0.64
SH3RF1Q7Z6J0 TK2-207ENST00000544898 3441 ntAPPRIS P3 TSL 1 (best) BASIC19.03■□□□□ 0.64
SH3RF1Q7Z6J0 NRXN2-202ENST00000301894 3535 ntTSL 5 BASIC19.03■□□□□ 0.64
SH3RF1Q7Z6J0 PC-204ENST00000524491 1714 ntTSL 2 BASIC19.03■□□□□ 0.64
SH3RF1Q7Z6J0 ANXA4-202ENST00000409920 1414 ntTSL 1 (best) BASIC19.03■□□□□ 0.64
SH3RF1Q7Z6J0 KRT8P49-201ENST00000604166 1432 ntBASIC19.03■□□□□ 0.64
SH3RF1Q7Z6J0 NPY-203ENST00000407573 705 ntAPPRIS P1 TSL 3 BASIC19.03■□□□□ 0.64
SH3RF1Q7Z6J0 C1orf226-202ENST00000426197 1049 ntAPPRIS P3 TSL 2 BASIC19.03■□□□□ 0.64
SH3RF1Q7Z6J0 GPS2P2-201ENST00000430745 888 ntBASIC19.03■□□□□ 0.64
SH3RF1Q7Z6J0 NAGK-205ENST00000443938 1221 ntAPPRIS ALT1 TSL 5 BASIC19.03■□□□□ 0.64
SH3RF1Q7Z6J0 ITGB1BP1-205ENST00000456913 1043 ntTSL 2 BASIC19.03■□□□□ 0.64
SH3RF1Q7Z6J0 CCDC159-201ENST00000458408 1062 ntAPPRIS P1 TSL 5 BASIC19.03■□□□□ 0.64
SH3RF1Q7Z6J0 ITGB1BP1-216ENST00000488451 874 ntTSL 3 BASIC19.03■□□□□ 0.64
SH3RF1Q7Z6J0 MEIS3P1-201ENST00000495167 958 ntBASIC19.03■□□□□ 0.64
SH3RF1Q7Z6J0 AC079140.1-201ENST00000508039 487 ntBASIC19.03■□□□□ 0.64
SH3RF1Q7Z6J0 AC005330.1-201ENST00000590086 1238 ntTSL 5 BASIC19.03■□□□□ 0.64
SH3RF1Q7Z6J0 TMIGD2-203ENST00000600114 489 ntAPPRIS ALT2 TSL 1 (best) BASIC19.03■□□□□ 0.64
SH3RF1Q7Z6J0 GOLGA2-215ENST00000639983 1038 ntTSL 1 (best) BASIC19.03■□□□□ 0.64
SH3RF1Q7Z6J0 PTHLH-202ENST00000395868 1674 ntAPPRIS P3 TSL 1 (best) BASIC19.03■□□□□ 0.64
SH3RF1Q7Z6J0 IRF1-202ENST00000405885 2061 ntAPPRIS P1 TSL 5 BASIC19.03■□□□□ 0.64
SH3RF1Q7Z6J0 LAT2-204ENST00000398475 2453 ntAPPRIS P2 TSL 1 (best) BASIC19.03■□□□□ 0.64
SH3RF1Q7Z6J0 ZNF18-204ENST00000580306 2330 ntAPPRIS P3 TSL 2 BASIC19.03■□□□□ 0.64
SH3RF1Q7Z6J0 SMG5-201ENST00000361813 4559 ntAPPRIS P1 TSL 1 (best) BASIC19.03■□□□□ 0.64
SH3RF1Q7Z6J0 PARP12-201ENST00000263549 3796 ntAPPRIS P1 TSL 1 (best) BASIC19.03■□□□□ 0.64
SH3RF1Q7Z6J0 PKN3-201ENST00000291906 3375 ntAPPRIS P1 TSL 1 (best) BASIC19.03■□□□□ 0.64
SH3RF1Q7Z6J0 TMEM155-202ENST00000394394 1753 ntAPPRIS P2 TSL 3 BASIC19.03■□□□□ 0.64
SH3RF1Q7Z6J0 TMEM177-201ENST00000272521 1394 ntAPPRIS P1 TSL 1 (best) BASIC19.03■□□□□ 0.64
SH3RF1Q7Z6J0 FO538757.1-201ENST00000623083 1397 ntBASIC19.03■□□□□ 0.64
SH3RF1Q7Z6J0 BSG-202ENST00000346916 1605 ntTSL 1 (best) BASIC19.03■□□□□ 0.64
SH3RF1Q7Z6J0 NOMO2-202ENST00000381474 3911 ntAPPRIS ALT2 TSL 5 BASIC19.03■□□□□ 0.64
SH3RF1Q7Z6J0 CCNYL1-201ENST00000295414 3767 ntTSL 5 BASIC19.03■□□□□ 0.64
SH3RF1Q7Z6J0 PTPA-203ENST00000348141 2737 ntTSL 5 BASIC19.02■□□□□ 0.64
SH3RF1Q7Z6J0 PTPA-207ENST00000393370 2737 ntAPPRIS P1 TSL 1 (best) BASIC19.02■□□□□ 0.64
SH3RF1Q7Z6J0 TRIP6-209ENST00000619988 1303 ntTSL 1 (best) BASIC19.02■□□□□ 0.64
SH3RF1Q7Z6J0 GPS1-228ENST00000624957 1825 ntAPPRIS ALT1 TSL 5 BASIC19.02■□□□□ 0.64
SH3RF1Q7Z6J0 ZNF503-201ENST00000372524 3347 ntAPPRIS P1 TSL 1 (best) BASIC19.02■□□□□ 0.64
SH3RF1Q7Z6J0 ZNF346-202ENST00000503039 2774 ntTSL 2 BASIC19.02■□□□□ 0.64
SH3RF1Q7Z6J0 CD8B-201ENST00000331469 832 ntTSL 1 (best) BASIC19.02■□□□□ 0.64
SH3RF1Q7Z6J0 MUC1-201ENST00000337604 859 ntAPPRIS P3 TSL 1 (best) BASIC19.02■□□□□ 0.64
SH3RF1Q7Z6J0 CEP19-201ENST00000399942 1172 ntAPPRIS ALT2 TSL 5 BASIC19.02■□□□□ 0.64
SH3RF1Q7Z6J0 KLF2P3-201ENST00000451977 1087 ntBASIC19.02■□□□□ 0.64
SH3RF1Q7Z6J0 AL512356.2-201ENST00000546955 174 ntBASIC19.02■□□□□ 0.64
SH3RF1Q7Z6J0 AP000275.2-202ENST00000553001 929 ntTSL 5 BASIC19.02■□□□□ 0.64
SH3RF1Q7Z6J0 SLC1A6-208ENST00000598504 2987 ntTSL 1 (best) BASIC19.02■□□□□ 0.64
SH3RF1Q7Z6J0 HDDC2-203ENST00000608284 538 ntTSL 3 BASIC19.02■□□□□ 0.64
SH3RF1Q7Z6J0 AC008761.3-201ENST00000624803 892 ntBASIC19.02■□□□□ 0.64
SH3RF1Q7Z6J0 AL121758.1-201ENST00000488788 2714 ntAPPRIS P1 TSL 2 BASIC19.02■□□□□ 0.64
SH3RF1Q7Z6J0 PTPDC1-202ENST00000375360 4517 ntAPPRIS ALT2 TSL 1 (best) BASIC19.02■□□□□ 0.64
SH3RF1Q7Z6J0 DLG4-201ENST00000302955 3184 ntAPPRIS P3 TSL 5 BASIC19.02■□□□□ 0.64
SH3RF1Q7Z6J0 SNX14-210ENST00000505648 3193 ntTSL 2 BASIC19.02■□□□□ 0.64
SH3RF1Q7Z6J0 URAHP-203ENST00000517889 1381 ntTSL 1 (best) BASIC19.02■□□□□ 0.64
SH3RF1Q7Z6J0 MAP4K1-203ENST00000586296 1363 ntTSL 5 BASIC19.02■□□□□ 0.64
SH3RF1Q7Z6J0 AL021920.2-201ENST00000624828 1351 ntBASIC19.02■□□□□ 0.64
SH3RF1Q7Z6J0 KIFC3-203ENST00000445690 3379 ntAPPRIS ALT2 TSL 1 (best) BASIC19.02■□□□□ 0.63
SH3RF1Q7Z6J0 KLK3-201ENST00000326003 1463 ntAPPRIS P1 TSL 1 (best) BASIC19.02■□□□□ 0.63
SH3RF1Q7Z6J0 RAB37-208ENST00000402449 1560 ntAPPRIS P3 TSL 2 BASIC19.02■□□□□ 0.63
SH3RF1Q7Z6J0 FNDC5-201ENST00000373471 2732 ntAPPRIS ALT2 TSL 2 BASIC19.02■□□□□ 0.63
SH3RF1Q7Z6J0 DUOXA1-202ENST00000430224 1317 ntTSL 1 (best) BASIC19.01■□□□□ 0.63
SH3RF1Q7Z6J0 RPAP3-203ENST00000432584 2133 ntTSL 2 BASIC19.01■□□□□ 0.63
SH3RF1Q7Z6J0 UBXN2A-201ENST00000309033 6066 ntAPPRIS P1 TSL 1 (best) BASIC19.01■□□□□ 0.63
SH3RF1Q7Z6J0 IQCE-204ENST00000404984 2086 ntAPPRIS ALT2 TSL 5 BASIC19.01■□□□□ 0.63
SH3RF1Q7Z6J0 AC006449.5-201ENST00000610658 2098 ntBASIC19.01■□□□□ 0.63
SH3RF1Q7Z6J0 SEPT9-237ENST00000591198 2160 ntTSL 2 BASIC19.01■□□□□ 0.63
SH3RF1Q7Z6J0 SAMM50-201ENST00000350028 1717 ntAPPRIS P1 TSL 1 (best) BASIC19.01■□□□□ 0.63
SH3RF1Q7Z6J0 NR4A2-203ENST00000409108 1735 ntTSL 5 BASIC19.01■□□□□ 0.63
SH3RF1Q7Z6J0 NTRK1-202ENST00000368196 2701 ntAPPRIS ALT2 TSL 1 (best) BASIC19.01■□□□□ 0.63
SH3RF1Q7Z6J0 LY6K-205ENST00000522591 2724 ntAPPRIS ALT2 TSL 2 BASIC19.01■□□□□ 0.63
SH3RF1Q7Z6J0 ZNF524-201ENST00000301073 1102 ntAPPRIS P1 TSL 1 (best) BASIC19.01■□□□□ 0.63
SH3RF1Q7Z6J0 POP7-201ENST00000303151 927 ntAPPRIS P1 TSL 1 (best) BASIC19.01■□□□□ 0.63
SH3RF1Q7Z6J0 ZDHHC20-IT1-201ENST00000417513 440 ntTSL 3 BASIC19.01■□□□□ 0.63
SH3RF1Q7Z6J0 AL137003.1-201ENST00000423260 491 ntTSL 5 BASIC19.01■□□□□ 0.63
SH3RF1Q7Z6J0 KRT18P32-201ENST00000424695 1287 ntBASIC19.01■□□□□ 0.63
SH3RF1Q7Z6J0 ST7-OT4-203ENST00000466018 894 ntTSL 5 BASIC19.01■□□□□ 0.63
SH3RF1Q7Z6J0 UCHL1-204ENST00000503431 917 ntAPPRIS P1 TSL 3 BASIC19.01■□□□□ 0.63
SH3RF1Q7Z6J0 CERNA1-201ENST00000559779 908 ntTSL 3 BASIC19.01■□□□□ 0.63
SH3RF1Q7Z6J0 AC243562.1-201ENST00000560672 389 ntBASIC19.01■□□□□ 0.63
SH3RF1Q7Z6J0 AC013467.2-201ENST00000605472 835 ntBASIC19.01■□□□□ 0.63
SH3RF1Q7Z6J0 CECR7-204ENST00000609932 568 ntTSL 2 BASIC19.01■□□□□ 0.63
SH3RF1Q7Z6J0 AL008721.1-201ENST00000609964 604 ntBASIC19.01■□□□□ 0.63
Retrieved 100 of 98,524 protein–RNA pairs in 42.6 ms