Protein–RNA interactions for Protein: Q709C8

VPS13C, Vacuolar protein sorting-associated protein 13C, humanhuman

Predictions only

Length 3,753 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13CQ709C8 CFLAR-203ENST00000341222 1283 ntTSL 1 (best) BASIC13.67□□□□□ -0.22
VPS13CQ709C8 RBM39-205ENST00000397370 612 ntTSL 2 BASIC13.67□□□□□ -0.22
VPS13CQ709C8 CABP1-204ENST00000453000 1857 ntTSL 1 (best) BASIC13.67□□□□□ -0.22
VPS13CQ709C8 RHOA-206ENST00000454011 889 ntTSL 2 BASIC13.67□□□□□ -0.22
VPS13CQ709C8 AC136475.5-202ENST00000524824 587 ntTSL 4 BASIC13.67□□□□□ -0.22
VPS13CQ709C8 AC131009.1-201ENST00000539078 426 ntTSL 5 BASIC13.67□□□□□ -0.22
VPS13CQ709C8 TBP-206ENST00000540980 1701 ntAPPRIS ALT2 TSL 2 BASIC13.67□□□□□ -0.22
VPS13CQ709C8 AL096870.1-201ENST00000555591 930 ntAPPRIS P1 TSL 4 BASIC13.67□□□□□ -0.22
VPS13CQ709C8 AC024619.2-201ENST00000581964 517 ntTSL 5 BASIC13.67□□□□□ -0.22
VPS13CQ709C8 BCAT2-209ENST00000599246 1449 ntTSL 1 (best) BASIC13.67□□□□□ -0.22
VPS13CQ709C8 LRRN4CL-201ENST00000317449 2585 ntAPPRIS P1 TSL 1 (best) BASIC13.66□□□□□ -0.22
VPS13CQ709C8 FBXO4-201ENST00000281623 1682 ntAPPRIS P1 TSL 1 (best) BASIC13.66□□□□□ -0.22
VPS13CQ709C8 PDE4DIP-230ENST00000530472 1690 ntTSL 1 (best) BASIC13.66□□□□□ -0.22
VPS13CQ709C8 PSMC3-201ENST00000298852 1544 ntAPPRIS P2 TSL 1 (best) BASIC13.66□□□□□ -0.22
VPS13CQ709C8 GPC5-201ENST00000377067 2957 ntAPPRIS P1 TSL 1 (best) BASIC13.66□□□□□ -0.22
VPS13CQ709C8 LRCH3-201ENST00000334859 2258 ntTSL 1 (best) BASIC13.66□□□□□ -0.22
VPS13CQ709C8 LONP1-201ENST00000360614 3236 ntAPPRIS P1 TSL 1 (best) BASIC13.66□□□□□ -0.22
VPS13CQ709C8 PCDHB18P-201ENST00000524813 2368 ntBASIC13.66□□□□□ -0.22
VPS13CQ709C8 CIAPIN1-207ENST00000565961 1814 ntTSL 3 BASIC13.66□□□□□ -0.22
VPS13CQ709C8 CCDC84-201ENST00000334418 1202 ntAPPRIS P1 TSL 1 (best) BASIC13.66□□□□□ -0.22
VPS13CQ709C8 ECSIT-203ENST00000417981 970 ntTSL 2 BASIC13.66□□□□□ -0.22
VPS13CQ709C8 CDK2AP2P3-201ENST00000422476 372 ntBASIC13.66□□□□□ -0.22
VPS13CQ709C8 AL353705.2-201ENST00000428243 662 ntBASIC13.66□□□□□ -0.22
VPS13CQ709C8 STAG3L5P-205ENST00000473757 1255 ntTSL 1 (best) BASIC13.66□□□□□ -0.22
VPS13CQ709C8 TMEM33-208ENST00000513702 1092 ntAPPRIS P1 TSL 5 BASIC13.66□□□□□ -0.22
VPS13CQ709C8 SPECC1-223ENST00000584527 940 ntTSL 3 BASIC13.66□□□□□ -0.22
VPS13CQ709C8 CRTAC1-201ENST00000309155 1946 ntAPPRIS ALT2 TSL 1 (best) BASIC13.66□□□□□ -0.22
VPS13CQ709C8 OVOL1-203ENST00000532448 1774 ntTSL 1 (best) BASIC13.66□□□□□ -0.22
VPS13CQ709C8 PAX4-202ENST00000341640 2010 ntAPPRIS P2 TSL 1 (best) BASIC13.66□□□□□ -0.22
VPS13CQ709C8 MYCL-203ENST00000397332 3256 ntAPPRIS ALT2 TSL 1 (best) BASIC13.66□□□□□ -0.22
VPS13CQ709C8 TMSB15B-201ENST00000419165 1666 ntAPPRIS P1 TSL 2 BASIC13.66□□□□□ -0.22
VPS13CQ709C8 COQ6-201ENST00000334571 2118 ntAPPRIS P1 TSL 1 (best) BASIC13.66□□□□□ -0.22
VPS13CQ709C8 HLA-H-201ENST00000383620 1096 ntBASIC13.66□□□□□ -0.22
VPS13CQ709C8 MAGEA12-203ENST00000393900 1299 ntAPPRIS P1 TSL 1 (best) BASIC13.66□□□□□ -0.22
VPS13CQ709C8 SETD4-205ENST00000399208 1165 ntTSL 1 (best) BASIC13.66□□□□□ -0.22
VPS13CQ709C8 PABPN1L-201ENST00000411789 873 ntTSL 1 (best) BASIC13.66□□□□□ -0.22
VPS13CQ709C8 AC007405.2-202ENST00000418106 540 ntTSL 4 BASIC13.66□□□□□ -0.22
VPS13CQ709C8 HLA-DPB2-205ENST00000435074 1188 ntBASIC13.66□□□□□ -0.22
VPS13CQ709C8 KLC4-205ENST00000458460 1251 ntTSL 1 (best) BASIC13.66□□□□□ -0.22
VPS13CQ709C8 FADS2-205ENST00000517839 469 ntTSL 3 BASIC13.66□□□□□ -0.22
VPS13CQ709C8 AURKB-202ENST00000534871 1167 ntTSL 2 BASIC13.66□□□□□ -0.22
VPS13CQ709C8 EN2-201ENST00000297375 3395 ntAPPRIS P1 TSL 1 (best) BASIC13.66□□□□□ -0.22
VPS13CQ709C8 CSNK2A1-203ENST00000400217 1451 ntTSL 2 BASIC13.66□□□□□ -0.22
VPS13CQ709C8 RAB40C-205ENST00000539661 2609 ntAPPRIS P1 TSL 3 BASIC13.66□□□□□ -0.22
VPS13CQ709C8 AGBL5-202ENST00000360131 3177 ntAPPRIS P3 TSL 1 (best) BASIC13.66□□□□□ -0.22
VPS13CQ709C8 PANK2-209ENST00000621507 1763 ntTSL 1 (best) BASIC13.66□□□□□ -0.22
VPS13CQ709C8 ARMC6-203ENST00000392336 1866 ntTSL 2 BASIC13.66□□□□□ -0.22
VPS13CQ709C8 CYP2S1-201ENST00000310054 2782 ntAPPRIS P1 TSL 1 (best) BASIC13.66□□□□□ -0.22
VPS13CQ709C8 AMT-232ENST00000636199 1546 ntTSL 5 BASIC13.66□□□□□ -0.22
VPS13CQ709C8 DNAH14-206ENST00000400952 1984 ntTSL 1 (best) BASIC13.66□□□□□ -0.22
VPS13CQ709C8 QSOX1-201ENST00000367600 2519 ntAPPRIS ALT2 TSL 1 (best) BASIC13.66□□□□□ -0.22
VPS13CQ709C8 ABHD14B-206ENST00000483233 2056 ntAPPRIS P1 TSL 1 (best) BASIC13.66□□□□□ -0.22
VPS13CQ709C8 NME6-203ENST00000415644 849 ntTSL 2 BASIC13.66□□□□□ -0.22
VPS13CQ709C8 C8orf37-AS1-202ENST00000517655 562 ntTSL 4 BASIC13.66□□□□□ -0.22
VPS13CQ709C8 AC006453.2-202ENST00000635968 827 ntTSL 5 BASIC13.66□□□□□ -0.22
VPS13CQ709C8 MAGEA2-201ENST00000595583 1830 ntAPPRIS P1 TSL 1 (best) BASIC13.66□□□□□ -0.22
VPS13CQ709C8 GDF5-202ENST00000374372 2572 ntAPPRIS P1 TSL 1 (best) BASIC13.65□□□□□ -0.22
VPS13CQ709C8 DMPK-204ENST00000447742 2754 ntAPPRIS ALT2 TSL 1 (best) BASIC13.65□□□□□ -0.22
VPS13CQ709C8 DACH1-203ENST00000619232 2986 ntAPPRIS ALT2 TSL 5 BASIC13.65□□□□□ -0.22
VPS13CQ709C8 SNX33P1-201ENST00000592116 1762 ntBASIC13.65□□□□□ -0.22
VPS13CQ709C8 AL390961.4-201ENST00000623958 2535 ntBASIC13.65□□□□□ -0.22
VPS13CQ709C8 FAM222A-201ENST00000358906 2731 ntAPPRIS P1 TSL 5 BASIC13.65□□□□□ -0.22
VPS13CQ709C8 C6orf223-203ENST00000442114 3109 ntAPPRIS ALT2 TSL 1 (best) BASIC13.65□□□□□ -0.22
VPS13CQ709C8 TM6SF2-201ENST00000389363 1505 ntAPPRIS P1 TSL 1 (best) BASIC13.65□□□□□ -0.22
VPS13CQ709C8 NR4A2-204ENST00000409572 2878 ntAPPRIS P1 TSL 5 BASIC13.65□□□□□ -0.22
VPS13CQ709C8 KCNQ1-AS1-201ENST00000440887 1084 ntTSL 5 BASIC13.65□□□□□ -0.22
VPS13CQ709C8 DSCR3-207ENST00000476950 937 ntTSL 2 BASIC13.65□□□□□ -0.22
VPS13CQ709C8 SPDYE16-201ENST00000515340 858 ntAPPRIS ALT2 TSL 5 BASIC13.65□□□□□ -0.22
VPS13CQ709C8 AC005833.2-201ENST00000527518 1249 ntTSL 1 (best) BASIC13.65□□□□□ -0.22
VPS13CQ709C8 TMEM218-210ENST00000529609 734 ntTSL 3 BASIC13.65□□□□□ -0.22
VPS13CQ709C8 HAUS2-207ENST00000568846 709 ntTSL 3 BASIC13.65□□□□□ -0.22
VPS13CQ709C8 USH1C-205ENST00000527020 2159 ntTSL 1 (best) BASIC13.65□□□□□ -0.22
VPS13CQ709C8 FOLH1-203ENST00000343844 2258 ntTSL 2 BASIC13.65□□□□□ -0.22
VPS13CQ709C8 NFASC-205ENST00000403080 2462 ntTSL 2 BASIC13.65□□□□□ -0.22
VPS13CQ709C8 RELA-227ENST00000615805 2236 ntTSL 5 BASIC13.65□□□□□ -0.22
VPS13CQ709C8 CDK2-204ENST00000553376 1725 ntTSL 5 BASIC13.65□□□□□ -0.22
VPS13CQ709C8 RNF167-214ENST00000576229 1436 ntAPPRIS ALT2 TSL 5 BASIC13.65□□□□□ -0.22
VPS13CQ709C8 AP001273.2-201ENST00000638767 2993 ntAPPRIS P1 TSL 5 BASIC13.65□□□□□ -0.22
VPS13CQ709C8 CA12-203ENST00000422263 2556 ntTSL 2 BASIC13.65□□□□□ -0.22
VPS13CQ709C8 CD8A-202ENST00000352580 1977 ntAPPRIS ALT2 TSL 2 BASIC13.65□□□□□ -0.22
VPS13CQ709C8 SYT12-203ENST00000525457 1678 ntAPPRIS P1 TSL 2 BASIC13.65□□□□□ -0.22
VPS13CQ709C8 P4HA2-201ENST00000166534 2230 ntAPPRIS P3 TSL 1 (best) BASIC13.65□□□□□ -0.22
VPS13CQ709C8 AC009133.2-201ENST00000566537 547 ntTSL 4 BASIC13.65□□□□□ -0.22
VPS13CQ709C8 KLK15-203ENST00000596931 692 ntTSL 1 (best) BASIC13.65□□□□□ -0.22
VPS13CQ709C8 PPA1-206ENST00000625364 644 ntTSL 5 BASIC13.65□□□□□ -0.22
VPS13CQ709C8 PCCB-218ENST00000490504 1613 ntTSL 3 BASIC13.65□□□□□ -0.22
VPS13CQ709C8 SLC22A16-202ENST00000368919 1987 ntAPPRIS P2 TSL 1 (best) BASIC13.65□□□□□ -0.22
VPS13CQ709C8 SLC22A12-201ENST00000336464 1854 ntTSL 1 (best) BASIC13.65□□□□□ -0.22
VPS13CQ709C8 FAH-201ENST00000261755 1471 ntAPPRIS P1 TSL 5 BASIC13.65□□□□□ -0.22
VPS13CQ709C8 AC020915.1-201ENST00000413518 1469 ntAPPRIS ALT2 TSL 2 BASIC13.65□□□□□ -0.22
VPS13CQ709C8 AL031731.1-201ENST00000642131 2094 ntBASIC13.65□□□□□ -0.23
VPS13CQ709C8 RBCK1-202ENST00000356286 2774 ntAPPRIS P1 TSL 1 (best) BASIC13.65□□□□□ -0.23
VPS13CQ709C8 CDKN2AIP-205ENST00000510928 860 ntTSL 2 BASIC13.65□□□□□ -0.23
VPS13CQ709C8 AC104989.1-201ENST00000519711 778 ntBASIC13.65□□□□□ -0.23
VPS13CQ709C8 IL32-215ENST00000529550 772 ntAPPRIS P4 TSL 3 BASIC13.65□□□□□ -0.23
VPS13CQ709C8 IL32-231ENST00000551513 791 ntAPPRIS ALT2 TSL 3 BASIC13.65□□□□□ -0.23
VPS13CQ709C8 AL163974.1-201ENST00000554540 466 ntTSL 5 BASIC13.65□□□□□ -0.23
VPS13CQ709C8 SEPT6-209ENST00000489216 1617 ntAPPRIS ALT1 TSL 1 (best) BASIC13.65□□□□□ -0.23
VPS13CQ709C8 ZNF205-206ENST00000620094 2309 ntAPPRIS P1 TSL 1 (best) BASIC13.64□□□□□ -0.23
VPS13CQ709C8 THEM4-201ENST00000368814 2377 ntAPPRIS P1 TSL 1 (best) BASIC13.64□□□□□ -0.23
Retrieved 100 of 98,524 protein–RNA pairs in 39.4 ms