Protein–RNA interactions for Protein: Q6A163

KRT39, Keratin, type I cytoskeletal 39, humanhuman

Predictions only

Length 491 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
KRT39Q6A163 ZIC5-201ENST00000267294 4639 ntAPPRIS P1 TSL 1 (best) BASIC17.98■□□□□ 0.47
KRT39Q6A163 AIDA-201ENST00000340020 3008 ntAPPRIS P1 TSL 1 (best) BASIC17.98■□□□□ 0.47
KRT39Q6A163 MUL1-201ENST00000264198 2438 ntAPPRIS P1 TSL 1 (best) BASIC17.98■□□□□ 0.47
KRT39Q6A163 SYNDIG1L-202ENST00000554823 2420 ntAPPRIS P1 TSL 3 BASIC17.98■□□□□ 0.47
KRT39Q6A163 NEIL2-204ENST00000455213 2323 ntAPPRIS P1 TSL 5 BASIC17.98■□□□□ 0.47
KRT39Q6A163 MGEA5-202ENST00000361464 5155 ntAPPRIS P1 TSL 1 (best) BASIC17.98■□□□□ 0.47
KRT39Q6A163 AP004609.1-201ENST00000498872 1646 ntTSL 1 (best) BASIC17.98■□□□□ 0.47
KRT39Q6A163 PARD3-206ENST00000374776 3389 ntTSL 1 (best) BASIC17.97■□□□□ 0.47
KRT39Q6A163 VARS-215ENST00000375663 4312 ntAPPRIS P1 TSL 1 (best) BASIC17.97■□□□□ 0.47
KRT39Q6A163 UCKL1-203ENST00000369908 1954 ntAPPRIS P1 TSL 2 BASIC17.97■□□□□ 0.47
KRT39Q6A163 CTCFL-215ENST00000608158 1984 ntTSL 1 (best) BASIC17.97■□□□□ 0.47
KRT39Q6A163 ARMC6-203ENST00000392336 1866 ntTSL 2 BASIC17.97■□□□□ 0.47
KRT39Q6A163 PCGF3-213ENST00000620529 1899 ntBASIC17.97■□□□□ 0.47
KRT39Q6A163 ENOSF1-202ENST00000340116 1658 ntTSL 5 BASIC17.97■□□□□ 0.47
KRT39Q6A163 KRT35-202ENST00000393989 1670 ntAPPRIS P1 TSL 5 BASIC17.97■□□□□ 0.47
KRT39Q6A163 ADAM8-205ENST00000485491 2441 ntTSL 2 BASIC17.97■□□□□ 0.47
KRT39Q6A163 ANTXRL-205ENST00000620264 2206 ntAPPRIS P2 TSL 5 BASIC17.97■□□□□ 0.47
KRT39Q6A163 STIM2-203ENST00000467011 3925 ntAPPRIS ALT2 TSL 1 (best) BASIC17.97■□□□□ 0.47
KRT39Q6A163 FGFBP2-201ENST00000259989 1168 ntAPPRIS P1 TSL 1 (best) BASIC17.97■□□□□ 0.47
KRT39Q6A163 MRGPRD-201ENST00000309106 966 ntAPPRIS P1 BASIC17.97■□□□□ 0.47
KRT39Q6A163 C22orf39-201ENST00000333059 1221 ntAPPRIS P1 TSL 1 (best) BASIC17.97■□□□□ 0.47
KRT39Q6A163 NPB-201ENST00000333383 704 ntAPPRIS P2 TSL 1 (best) BASIC17.97■□□□□ 0.47
KRT39Q6A163 ELK1-202ENST00000343894 736 ntAPPRIS ALT2 TSL 1 (best) BASIC17.97■□□□□ 0.47
KRT39Q6A163 ANAPC11-201ENST00000344877 918 ntAPPRIS P1 TSL 1 (best) BASIC17.97■□□□□ 0.47
KRT39Q6A163 KCNIP2-208ENST00000370046 923 ntTSL 5 BASIC17.97■□□□□ 0.47
KRT39Q6A163 GBGT1-201ENST00000372036 871 ntTSL 3 BASIC17.97■□□□□ 0.47
KRT39Q6A163 AC140658.5-201ENST00000438532 169 ntBASIC17.97■□□□□ 0.47
KRT39Q6A163 BLOC1S1-201ENST00000547076 837 ntTSL 2 BASIC17.97■□□□□ 0.47
KRT39Q6A163 PDPK2P-202ENST00000562415 1191 ntBASIC17.97■□□□□ 0.47
KRT39Q6A163 AC005606.1-201ENST00000567515 504 ntTSL 5 BASIC17.97■□□□□ 0.47
KRT39Q6A163 COQ7-208ENST00000568985 714 ntAPPRIS P3 TSL 2 BASIC17.97■□□□□ 0.47
KRT39Q6A163 ANAPC11-213ENST00000577747 672 ntAPPRIS P1 TSL 5 BASIC17.97■□□□□ 0.47
KRT39Q6A163 AC020765.3-201ENST00000613051 740 ntBASIC17.97■□□□□ 0.47
KRT39Q6A163 TRMT44-201ENST00000389737 2799 ntAPPRIS P2 TSL 5 BASIC17.97■□□□□ 0.47
KRT39Q6A163 ZNF500-201ENST00000219478 5880 ntAPPRIS P1 TSL 2 BASIC17.97■□□□□ 0.47
KRT39Q6A163 AC005052.1-201ENST00000625181 2492 ntBASIC17.97■□□□□ 0.47
KRT39Q6A163 CAPRIN1-207ENST00000529307 2266 ntAPPRIS ALT2 TSL 2 BASIC17.97■□□□□ 0.47
KRT39Q6A163 SEPT9-237ENST00000591198 2160 ntTSL 2 BASIC17.97■□□□□ 0.47
KRT39Q6A163 NBL1-210ENST00000615215 2160 ntAPPRIS ALT2 TSL 1 (best) BASIC17.97■□□□□ 0.47
KRT39Q6A163 KIF25-202ENST00000354419 1510 ntAPPRIS P1 TSL 1 (best) BASIC17.97■□□□□ 0.47
KRT39Q6A163 ADAM11-203ENST00000535346 2529 ntTSL 2 BASIC17.97■□□□□ 0.47
KRT39Q6A163 PIKFYVE-204ENST00000407449 1898 ntTSL 1 (best) BASIC17.97■□□□□ 0.47
KRT39Q6A163 COQ7-201ENST00000321998 2657 ntAPPRIS P3 TSL 1 (best) BASIC17.96■□□□□ 0.47
KRT39Q6A163 IRF5-215ENST00000619830 1652 ntTSL 2 BASIC17.96■□□□□ 0.47
KRT39Q6A163 DUSP8-202ENST00000397374 4480 ntAPPRIS P1 TSL 1 (best) BASIC17.96■□□□□ 0.47
KRT39Q6A163 LINC01979-201ENST00000576738 5271 ntTSL 1 (best) BASIC17.96■□□□□ 0.47
KRT39Q6A163 HSPA1A-201ENST00000375651 2483 ntAPPRIS P1 BASIC17.96■□□□□ 0.47
KRT39Q6A163 RAB22A-201ENST00000244040 8670 ntAPPRIS P1 TSL 1 (best) BASIC17.96■□□□□ 0.47
KRT39Q6A163 KDM6B-202ENST00000448097 5422 ntAPPRIS ALT2 TSL 5 BASIC17.96■□□□□ 0.47
KRT39Q6A163 LTK-204ENST00000561619 1821 ntAPPRIS ALT2 TSL 1 (best) BASIC17.96■□□□□ 0.47
KRT39Q6A163 TVP23B-202ENST00000476139 2989 ntTSL 1 (best) BASIC17.96■□□□□ 0.47
KRT39Q6A163 PRAG1-201ENST00000615670 4903 ntAPPRIS P1 TSL 5 BASIC17.96■□□□□ 0.47
KRT39Q6A163 TUBA4B-203ENST00000490341 1380 ntAPPRIS P1 TSL 2 BASIC17.96■□□□□ 0.47
KRT39Q6A163 ZNF503-201ENST00000372524 3347 ntAPPRIS P1 TSL 1 (best) BASIC17.96■□□□□ 0.47
KRT39Q6A163 PTK7-202ENST00000230419 4272 ntAPPRIS P3 TSL 1 (best) BASIC17.96■□□□□ 0.47
KRT39Q6A163 LRRC56-201ENST00000270115 2769 ntAPPRIS P1 TSL 1 (best) BASIC17.96■□□□□ 0.47
KRT39Q6A163 LGALS1-201ENST00000215909 560 ntAPPRIS P1 TSL 1 (best) BASIC17.96■□□□□ 0.47
KRT39Q6A163 DNAJC4-203ENST00000355040 759 ntTSL 1 (best) BASIC17.96■□□□□ 0.47
KRT39Q6A163 MRPL9-202ENST00000368830 1296 ntAPPRIS P3 TSL 1 (best) BASIC17.96■□□□□ 0.47
KRT39Q6A163 MRPS16-201ENST00000372940 866 ntTSL 2 BASIC17.96■□□□□ 0.47
KRT39Q6A163 HIST1H2BL-201ENST00000377401 488 ntAPPRIS P1 BASIC17.96■□□□□ 0.47
KRT39Q6A163 GRM5-203ENST00000393294 1268 ntTSL 1 (best) BASIC17.96■□□□□ 0.47
KRT39Q6A163 CBX7-202ENST00000401405 784 ntTSL 1 (best) BASIC17.96■□□□□ 0.47
KRT39Q6A163 ZGLP1-201ENST00000403352 1028 ntAPPRIS ALT2 TSL 5 BASIC17.96■□□□□ 0.47
KRT39Q6A163 AC013270.1-201ENST00000425578 440 ntTSL 2 BASIC17.96■□□□□ 0.47
KRT39Q6A163 TM4SF19-204ENST00000454715 1061 ntTSL 1 (best) BASIC17.96■□□□□ 0.47
KRT39Q6A163 AC074386.1-202ENST00000463561 864 ntBASIC17.96■□□□□ 0.47
KRT39Q6A163 GSTK1-207ENST00000479303 1185 ntTSL 1 (best) BASIC17.96■□□□□ 0.47
KRT39Q6A163 MIR130B-201ENST00000498589 1093 ntTSL 5 BASIC17.96■□□□□ 0.47
KRT39Q6A163 TRMT112-203ENST00000535750 823 ntTSL 2 BASIC17.96■□□□□ 0.47
KRT39Q6A163 PAX9-204ENST00000554201 1289 ntTSL 2 BASIC17.96■□□□□ 0.47
KRT39Q6A163 BEAN1-203ENST00000561796 1078 ntAPPRIS P2 TSL 1 (best) BASIC17.96■□□□□ 0.47
KRT39Q6A163 AC040963.1-202ENST00000589729 644 ntTSL 5 BASIC17.96■□□□□ 0.47
KRT39Q6A163 AC008403.2-204ENST00000600650 1006 ntTSL 3 BASIC17.96■□□□□ 0.47
KRT39Q6A163 AL009183.1-201ENST00000603760 355 ntBASIC17.96■□□□□ 0.47
KRT39Q6A163 AL513190.1-201ENST00000621254 727 ntBASIC17.96■□□□□ 0.47
KRT39Q6A163 AC105760.2-201ENST00000418430 2341 ntTSL 2 BASIC17.96■□□□□ 0.47
KRT39Q6A163 MFSD1-202ENST00000392813 2244 ntTSL 2 BASIC17.96■□□□□ 0.47
KRT39Q6A163 NPM2-203ENST00000397940 1874 ntAPPRIS P2 TSL 2 BASIC17.96■□□□□ 0.47
KRT39Q6A163 NAT9-210ENST00000580301 1860 ntTSL 1 (best) BASIC17.96■□□□□ 0.47
KRT39Q6A163 RND2-202ENST00000587250 4147 ntAPPRIS P1 TSL 1 (best) BASIC17.96■□□□□ 0.47
KRT39Q6A163 C10orf10-201ENST00000298295 2120 ntAPPRIS P1 TSL 1 (best) BASIC17.96■□□□□ 0.47
KRT39Q6A163 PDE4DIP-230ENST00000530472 1690 ntTSL 1 (best) BASIC17.96■□□□□ 0.47
KRT39Q6A163 SEPT8-204ENST00000378699 2289 ntTSL 5 BASIC17.96■□□□□ 0.47
KRT39Q6A163 ZDHHC4-206ENST00000405731 1348 ntAPPRIS P1 TSL 1 (best) BASIC17.96■□□□□ 0.46
KRT39Q6A163 PJA1-201ENST00000361478 2755 ntAPPRIS P4 TSL 1 (best) BASIC17.96■□□□□ 0.46
KRT39Q6A163 GALNT14-201ENST00000324589 2169 ntTSL 2 BASIC17.96■□□□□ 0.46
KRT39Q6A163 C12orf66-204ENST00000544871 2441 ntTSL 2 BASIC17.96■□□□□ 0.46
KRT39Q6A163 RCOR3-204ENST00000452621 1827 ntTSL 2 BASIC17.95■□□□□ 0.46
KRT39Q6A163 MAP3K20-203ENST00000409176 2572 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
KRT39Q6A163 GLDC-201ENST00000321612 3900 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
KRT39Q6A163 LINC01144-201ENST00000626198 1710 ntBASIC17.95■□□□□ 0.46
KRT39Q6A163 SYNC-202ENST00000409190 3398 ntAPPRIS P3 TSL 2 BASIC17.95■□□□□ 0.46
KRT39Q6A163 ABHD18-203ENST00000444616 2129 ntAPPRIS P1 TSL 5 BASIC17.95■□□□□ 0.46
KRT39Q6A163 TATDN3-214ENST00000532324 1381 ntTSL 2 BASIC17.95■□□□□ 0.46
KRT39Q6A163 STOX1-204ENST00000399169 3281 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
KRT39Q6A163 EIPR1-202ENST00000398659 1795 ntTSL 5 BASIC17.95■□□□□ 0.46
KRT39Q6A163 RPLP2-201ENST00000321153 781 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
KRT39Q6A163 KLHL7-201ENST00000322275 969 ntTSL 1 (best) BASIC17.95■□□□□ 0.46
KRT39Q6A163 IFNL1-201ENST00000333625 857 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
Retrieved 100 of 98,524 protein–RNA pairs in 46.1 ms