Protein–RNA interactions for Protein: P52701

MSH6, DNA mismatch repair protein Msh6, humanhuman

Predictions only

Length 1,360 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSH6P52701 KCNH2-203ENST00000430723 2648 ntTSL 5 BASIC22.77■■□□□ 1.24
MSH6P52701 AC108860.2-201ENST00000562760 2183 ntBASIC22.76■■□□□ 1.23
MSH6P52701 DPM2-202ENST00000373110 738 ntTSL 2 BASIC22.76■■□□□ 1.23
MSH6P52701 TAGLN-202ENST00000392951 928 ntAPPRIS P1 TSL 1 (best) BASIC22.76■■□□□ 1.23
MSH6P52701 DMKN-204ENST00000408915 600 ntAPPRIS ALT2 TSL 1 (best) BASIC22.76■■□□□ 1.23
MSH6P52701 AC093904.1-201ENST00000474561 455 ntTSL 3 BASIC22.76■■□□□ 1.23
MSH6P52701 ZNF767P-206ENST00000513792 565 ntBASIC22.76■■□□□ 1.23
MSH6P52701 AC008750.2-202ENST00000532688 729 ntTSL 3 BASIC22.76■■□□□ 1.23
MSH6P52701 AC138028.3-201ENST00000561699 213 ntTSL 3 BASIC22.76■■□□□ 1.23
MSH6P52701 AC079336.2-201ENST00000578408 927 ntTSL 3 BASIC22.76■■□□□ 1.23
MSH6P52701 KLK3-204ENST00000593997 1035 ntTSL 1 (best) BASIC22.76■■□□□ 1.23
MSH6P52701 AC097634.3-201ENST00000613067 820 ntTSL 3 BASIC22.76■■□□□ 1.23
MSH6P52701 NFE2-201ENST00000312156 1658 ntAPPRIS P1 TSL 1 (best) BASIC22.76■■□□□ 1.23
MSH6P52701 NFS1-202ENST00000374085 2645 ntTSL 2 BASIC22.76■■□□□ 1.23
MSH6P52701 SLC2A4-202ENST00000424875 1852 ntTSL 2 BASIC22.76■■□□□ 1.23
MSH6P52701 BFSP1-201ENST00000377868 2063 ntTSL 1 (best) BASIC22.76■■□□□ 1.23
MSH6P52701 KCNC4-203ENST00000413138 3018 ntAPPRIS ALT2 TSL 5 BASIC22.76■■□□□ 1.23
MSH6P52701 KCNAB2-212ENST00000458166 1336 ntTSL 2 BASIC22.76■■□□□ 1.23
MSH6P52701 ENTPD6-209ENST00000433259 2654 ntTSL 5 BASIC22.76■■□□□ 1.23
MSH6P52701 PPTC7-201ENST00000354300 4996 ntAPPRIS P1 TSL 1 (best) BASIC22.76■■□□□ 1.23
MSH6P52701 C1QTNF1-208ENST00000580474 1600 ntAPPRIS P1 TSL 1 (best) BASIC22.76■■□□□ 1.23
MSH6P52701 FERMT2-204ENST00000399304 2082 ntTSL 1 (best) BASIC22.76■■□□□ 1.23
MSH6P52701 NR5A1-202ENST00000373588 3104 ntAPPRIS P1 TSL 1 (best) BASIC22.76■■□□□ 1.23
MSH6P52701 NRXN1-220ENST00000611589 1857 ntTSL 5 BASIC22.76■■□□□ 1.23
MSH6P52701 MRPL55-215ENST00000366742 630 ntAPPRIS P1 TSL 2 BASIC22.76■■□□□ 1.23
MSH6P52701 LAMA4-203ENST00000368638 1061 ntTSL 2 BASIC22.76■■□□□ 1.23
MSH6P52701 GSKIP-201ENST00000438650 2140 ntAPPRIS P1 TSL 2 BASIC22.76■■□□□ 1.23
MSH6P52701 AC007551.1-201ENST00000457394 519 ntBASIC22.76■■□□□ 1.23
MSH6P52701 AP002748.3-205ENST00000525142 567 ntTSL 3 BASIC22.76■■□□□ 1.23
MSH6P52701 BRK1-201ENST00000530758 1233 ntAPPRIS P1 TSL 1 (best) BASIC22.76■■□□□ 1.23
MSH6P52701 PLEKHA7-214ENST00000532079 565 ntTSL 5 BASIC22.76■■□□□ 1.23
MSH6P52701 AP002748.3-203ENST00000533502 581 ntTSL 3 BASIC22.76■■□□□ 1.23
MSH6P52701 TIMM17BP1-201ENST00000545713 516 ntBASIC22.76■■□□□ 1.23
MSH6P52701 ERH-203ENST00000557016 1124 ntAPPRIS P1 TSL 1 (best) BASIC22.76■■□□□ 1.23
MSH6P52701 COG4-212ENST00000564653 590 ntTSL 5 BASIC22.76■■□□□ 1.23
MSH6P52701 AC020911.1-201ENST00000591038 578 ntTSL 2 BASIC22.76■■□□□ 1.23
MSH6P52701 ZFR2-208ENST00000592398 532 ntTSL 5 BASIC22.76■■□□□ 1.23
MSH6P52701 NDUFS7-219ENST00000620479 754 ntTSL 5 BASIC22.76■■□□□ 1.23
MSH6P52701 OR2T27-203ENST00000641652 1285 ntAPPRIS P1 BASIC22.76■■□□□ 1.23
MSH6P52701 CNOT11-201ENST00000289382 2599 ntAPPRIS P1 TSL 1 (best) BASIC22.75■■□□□ 1.23
MSH6P52701 AC008764.1-201ENST00000409035 2567 ntAPPRIS P1 TSL 2 BASIC22.75■■□□□ 1.23
MSH6P52701 FOXRED2-203ENST00000397223 2184 ntAPPRIS P1 TSL 1 (best) BASIC22.75■■□□□ 1.23
MSH6P52701 HDAC10-202ENST00000349505 1950 ntTSL 1 (best) BASIC22.75■■□□□ 1.23
MSH6P52701 GABRB2-202ENST00000353437 1963 ntAPPRIS P1 TSL 1 (best) BASIC22.75■■□□□ 1.23
MSH6P52701 DUSP18-206ENST00000407308 1978 ntAPPRIS P1 TSL 5 BASIC22.75■■□□□ 1.23
MSH6P52701 ETV3L-201ENST00000454449 1976 ntAPPRIS P1 TSL 2 BASIC22.75■■□□□ 1.23
MSH6P52701 ADORA1-202ENST00000337894 2919 ntAPPRIS P1 TSL 2 BASIC22.75■■□□□ 1.23
MSH6P52701 LMNA-207ENST00000368301 2461 ntTSL 2 BASIC22.75■■□□□ 1.23
MSH6P52701 PRG2-202ENST00000525955 1367 ntAPPRIS P3 TSL 2 BASIC22.75■■□□□ 1.23
MSH6P52701 CSK-201ENST00000220003 2767 ntAPPRIS P1 TSL 1 (best) BASIC22.75■■□□□ 1.23
MSH6P52701 EID3-201ENST00000527879 1467 ntAPPRIS P1 BASIC22.75■■□□□ 1.23
MSH6P52701 CADPS-202ENST00000357948 5190 ntAPPRIS ALT2 TSL 1 (best) BASIC22.75■■□□□ 1.23
MSH6P52701 PC-204ENST00000524491 1714 ntTSL 2 BASIC22.75■■□□□ 1.23
MSH6P52701 AC093525.9-201ENST00000624961 1746 ntBASIC22.75■■□□□ 1.23
MSH6P52701 PRDM12-201ENST00000253008 2476 ntAPPRIS P1 TSL 1 (best) BASIC22.75■■□□□ 1.23
MSH6P52701 SERPINF2-202ENST00000382061 2265 ntAPPRIS P1 TSL 1 (best) BASIC22.75■■□□□ 1.23
MSH6P52701 DNAJA3-203ENST00000431375 2294 ntTSL 2 BASIC22.75■■□□□ 1.23
MSH6P52701 LSP1-202ENST00000381775 2016 ntAPPRIS ALT2 TSL 2 BASIC22.75■■□□□ 1.23
MSH6P52701 POC1A-203ENST00000474012 1760 ntAPPRIS ALT2 TSL 2 BASIC22.75■■□□□ 1.23
MSH6P52701 RAB34-210ENST00000436730 863 ntAPPRIS P1 TSL 3 BASIC22.75■■□□□ 1.23
MSH6P52701 RPL7P3-201ENST00000441388 714 ntBASIC22.75■■□□□ 1.23
MSH6P52701 LINC01248-201ENST00000458264 468 ntTSL 3 BASIC22.75■■□□□ 1.23
MSH6P52701 AC108142.1-201ENST00000505389 286 ntTSL 3 BASIC22.75■■□□□ 1.23
MSH6P52701 SUOX-214ENST00000551841 906 ntTSL 3 BASIC22.75■■□□□ 1.23
MSH6P52701 COMMD4-217ENST00000567195 677 ntTSL 2 BASIC22.75■■□□□ 1.23
MSH6P52701 AC118553.2-203ENST00000639037 2590 ntAPPRIS P5 TSL 5 BASIC22.75■■□□□ 1.23
MSH6P52701 NFATC4-215ENST00000554661 2631 ntAPPRIS ALT2 TSL 1 (best) BASIC22.74■■□□□ 1.23
MSH6P52701 URAHP-202ENST00000409873 1349 ntTSL 1 (best) BASIC22.74■■□□□ 1.23
MSH6P52701 SAMD4A-208ENST00000555192 1337 ntTSL 1 (best) BASIC22.74■■□□□ 1.23
MSH6P52701 LOX-206ENST00000639739 1626 ntTSL 5 BASIC22.74■■□□□ 1.23
MSH6P52701 WNT5B-201ENST00000310594 2184 ntAPPRIS P1 TSL 1 (best) BASIC22.74■■□□□ 1.23
MSH6P52701 RNFT2-209ENST00000622220 2176 ntTSL 5 BASIC22.74■■□□□ 1.23
MSH6P52701 ZNF668-202ENST00000394983 2717 ntAPPRIS P1 TSL 5 BASIC22.74■■□□□ 1.23
MSH6P52701 PSMC3-212ENST00000602866 1373 ntAPPRIS ALT1 TSL 1 (best) BASIC22.74■■□□□ 1.23
MSH6P52701 RAP1GAP-204ENST00000374761 3318 ntTSL 5 BASIC22.74■■□□□ 1.23
MSH6P52701 GGT6-203ENST00000573591 1730 ntTSL 4 BASIC22.74■■□□□ 1.23
MSH6P52701 RNF121-201ENST00000361756 2625 ntAPPRIS P1 TSL 1 (best) BASIC22.74■■□□□ 1.23
MSH6P52701 LONP1-201ENST00000360614 3236 ntAPPRIS P1 TSL 1 (best) BASIC22.74■■□□□ 1.23
MSH6P52701 CRYM-201ENST00000219599 1471 ntAPPRIS P1 TSL 1 (best) BASIC22.74■■□□□ 1.23
MSH6P52701 RSPO4-201ENST00000217260 2707 ntAPPRIS P1 TSL 1 (best) BASIC22.74■■□□□ 1.23
MSH6P52701 KANK3-201ENST00000330915 2787 ntAPPRIS P2 TSL 1 (best) BASIC22.74■■□□□ 1.23
MSH6P52701 ZNF274-212ENST00000617501 2538 ntAPPRIS P4 TSL 1 (best) BASIC22.74■■□□□ 1.23
MSH6P52701 MTSS1L-204ENST00000616026 2241 ntAPPRIS ALT2 TSL 5 BASIC22.74■■□□□ 1.23
MSH6P52701 RNF186-201ENST00000375121 1250 ntAPPRIS P1 BASIC22.74■■□□□ 1.23
MSH6P52701 AL592464.1-201ENST00000429389 429 ntTSL 2 BASIC22.74■■□□□ 1.23
MSH6P52701 AL162742.1-201ENST00000434792 954 ntTSL 2 BASIC22.74■■□□□ 1.23
MSH6P52701 SNHG11-209ENST00000440918 556 ntTSL 3 BASIC22.74■■□□□ 1.23
MSH6P52701 ACRV1-202ENST00000527795 782 ntAPPRIS ALT2 TSL 2 BASIC22.74■■□□□ 1.23
MSH6P52701 AP000943.3-201ENST00000536540 954 ntTSL 3 BASIC22.74■■□□□ 1.23
MSH6P52701 AP001005.4-201ENST00000572530 387 ntTSL 3 BASIC22.74■■□□□ 1.23
MSH6P52701 PDE4A-202ENST00000344979 2579 ntTSL 1 (best) BASIC22.74■■□□□ 1.23
MSH6P52701 WLS-202ENST00000354777 2037 ntTSL 1 (best) BASIC22.73■■□□□ 1.23
MSH6P52701 AC118553.2-202ENST00000638792 2729 ntAPPRIS ALT2 TSL 5 BASIC22.73■■□□□ 1.23
MSH6P52701 DHPS-201ENST00000210060 1363 ntAPPRIS P1 TSL 1 (best) BASIC22.73■■□□□ 1.23
MSH6P52701 TBP-206ENST00000540980 1701 ntAPPRIS ALT2 TSL 2 BASIC22.73■■□□□ 1.23
MSH6P52701 RCAN3-209ENST00000616511 2527 ntTSL 1 (best) BASIC22.73■■□□□ 1.23
MSH6P52701 BEGAIN-211ENST00000637646 2911 ntTSL 5 BASIC22.73■■□□□ 1.23
MSH6P52701 CHRNB1-201ENST00000306071 2557 ntAPPRIS P1 TSL 1 (best) BASIC22.73■■□□□ 1.23
MSH6P52701 PFDN4-201ENST00000371419 1462 ntAPPRIS P1 TSL 1 (best) BASIC22.73■■□□□ 1.23
MSH6P52701 ACP2-205ENST00000527256 1499 ntTSL 2 BASIC22.73■■□□□ 1.23
Retrieved 100 of 98,524 protein–RNA pairs in 38.6 ms