Protein–RNA interactions for Protein: P47902

CDX1, Homeobox protein CDX-1, humanhuman

Predicted RBP Predictions only

Length 265 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CDX1P47902 PRODH-202ENST00000334029 1985 ntAPPRIS ALT2 TSL 1 (best) BASIC13.7□□□□□ -0.22
CDX1P47902 PRDM8-201ENST00000339711 4095 ntAPPRIS P1 TSL 1 (best) BASIC13.7□□□□□ -0.22
CDX1P47902 CICP4-201ENST00000447359 2812 ntBASIC13.7□□□□□ -0.22
CDX1P47902 RELT-201ENST00000064780 3535 ntAPPRIS P1 TSL 1 (best) BASIC13.7□□□□□ -0.22
CDX1P47902 TP53INP1-201ENST00000342697 5638 ntAPPRIS P1 TSL 1 (best) BASIC13.7□□□□□ -0.22
CDX1P47902 HES1-201ENST00000232424 1578 ntAPPRIS P1 TSL 1 (best) BASIC13.7□□□□□ -0.22
CDX1P47902 CXXC1-202ENST00000412036 2280 ntAPPRIS ALT1 TSL 1 (best) BASIC13.7□□□□□ -0.22
CDX1P47902 ATP6AP2-214ENST00000636287 1904 ntAPPRIS ALT2 TSL 5 BASIC13.7□□□□□ -0.22
CDX1P47902 RFPL2-203ENST00000400237 2407 ntAPPRIS P3 TSL 2 BASIC13.7□□□□□ -0.22
CDX1P47902 PTPRO-209ENST00000543886 2070 ntTSL 1 (best) BASIC13.7□□□□□ -0.22
CDX1P47902 PLIN1-202ENST00000430628 2900 ntAPPRIS P1 TSL 5 BASIC13.7□□□□□ -0.22
CDX1P47902 MAP1S-201ENST00000324096 3419 ntAPPRIS P3 TSL 1 (best) BASIC13.7□□□□□ -0.22
CDX1P47902 USH1C-202ENST00000318024 2237 ntAPPRIS ALT2 TSL 1 (best) BASIC13.7□□□□□ -0.22
CDX1P47902 TBRG4-203ENST00000395655 2225 ntTSL 2 BASIC13.7□□□□□ -0.22
CDX1P47902 BX276092.7-203ENST00000637198 1536 ntBASIC13.69□□□□□ -0.22
CDX1P47902 DAB2IP-205ENST00000408936 6784 ntAPPRIS ALT2 TSL 5 BASIC13.69□□□□□ -0.22
CDX1P47902 PRRT2-216ENST00000637403 2033 ntTSL 5 BASIC13.69□□□□□ -0.22
CDX1P47902 SHTN1-203ENST00000392901 2190 ntAPPRIS ALT2 TSL 2 BASIC13.69□□□□□ -0.22
CDX1P47902 CBL-204ENST00000634840 4813 ntAPPRIS ALT2 TSL 5 BASIC13.69□□□□□ -0.22
CDX1P47902 C11orf80-203ENST00000525449 1821 ntAPPRIS ALT2 TSL 1 (best) BASIC13.69□□□□□ -0.22
CDX1P47902 FAM210A-202ENST00000402563 4240 ntAPPRIS P1 TSL 3 BASIC13.69□□□□□ -0.22
CDX1P47902 ADM-208ENST00000534464 1640 ntTSL 2 BASIC13.69□□□□□ -0.22
CDX1P47902 DCAF8-218ENST00000610139 1607 ntTSL 1 (best) BASIC13.69□□□□□ -0.22
CDX1P47902 ATP2A3-205ENST00000397041 4675 ntAPPRIS P4 TSL 1 (best) BASIC13.69□□□□□ -0.22
CDX1P47902 NLE1-202ENST00000442241 2588 ntAPPRIS P1 TSL 1 (best) BASIC13.69□□□□□ -0.22
CDX1P47902 GML-201ENST00000220940 723 ntAPPRIS P1 TSL 1 (best) BASIC13.69□□□□□ -0.22
CDX1P47902 GOSR2-201ENST00000225567 1245 ntTSL 1 (best) BASIC13.69□□□□□ -0.22
CDX1P47902 NDUFB9-201ENST00000276689 711 ntAPPRIS P1 TSL 1 (best) BASIC13.69□□□□□ -0.22
CDX1P47902 GUCA2A-201ENST00000357001 569 ntAPPRIS P1 TSL 1 (best) BASIC13.69□□□□□ -0.22
CDX1P47902 MED22-202ENST00000371999 987 ntTSL 3 BASIC13.69□□□□□ -0.22
CDX1P47902 MRPS18A-201ENST00000372116 785 ntTSL 2 BASIC13.69□□□□□ -0.22
CDX1P47902 RAB24-204ENST00000393611 1236 ntAPPRIS P1 TSL 1 (best) BASIC13.69□□□□□ -0.22
CDX1P47902 MIEF2-202ENST00000395703 718 ntTSL 3 BASIC13.69□□□□□ -0.22
CDX1P47902 UPK3A-202ENST00000396082 627 ntAPPRIS ALT2 TSL 1 (best) BASIC13.69□□□□□ -0.22
CDX1P47902 GNB2-207ENST00000427895 1146 ntTSL 5 BASIC13.69□□□□□ -0.22
CDX1P47902 FIGNL1-207ENST00000435566 593 ntTSL 4 BASIC13.69□□□□□ -0.22
CDX1P47902 NCBP2-AS1-201ENST00000447775 562 ntTSL 5 BASIC13.69□□□□□ -0.22
CDX1P47902 AC099669.1-201ENST00000457331 456 ntTSL 3 BASIC13.69□□□□□ -0.22
CDX1P47902 AL356056.2-201ENST00000506914 669 ntTSL 4 BASIC13.69□□□□□ -0.22
CDX1P47902 BLOC1S1-204ENST00000549147 1229 ntTSL 1 (best) BASIC13.69□□□□□ -0.22
CDX1P47902 AC003688.1-201ENST00000577138 489 ntAPPRIS P1 TSL 3 BASIC13.69□□□□□ -0.22
CDX1P47902 AD001527.2-201ENST00000622994 785 ntBASIC13.69□□□□□ -0.22
CDX1P47902 AL139288.1-201ENST00000623748 933 ntBASIC13.69□□□□□ -0.22
CDX1P47902 SYTL2-215ENST00000527523 3049 ntTSL 2 BASIC13.69□□□□□ -0.22
CDX1P47902 AC074389.1-201ENST00000382528 1423 ntTSL 2 BASIC13.69□□□□□ -0.22
CDX1P47902 CXorf40B-205ENST00000462691 1440 ntAPPRIS ALT1 TSL 3 BASIC13.69□□□□□ -0.22
CDX1P47902 CLEC10A-204ENST00000571664 1442 ntAPPRIS ALT2 TSL 1 (best) BASIC13.69□□□□□ -0.22
CDX1P47902 STAP2-201ENST00000594605 1426 ntAPPRIS ALT2 TSL 1 (best) BASIC13.69□□□□□ -0.22
CDX1P47902 SYTL3-202ENST00000360448 2504 ntAPPRIS ALT1 TSL 5 BASIC13.69□□□□□ -0.22
CDX1P47902 SLC44A2-203ENST00000586078 3784 ntTSL 5 BASIC13.69□□□□□ -0.22
CDX1P47902 DLGAP1-222ENST00000639615 1898 ntTSL 5 BASIC13.69□□□□□ -0.22
CDX1P47902 GNAQ-201ENST00000286548 6539 ntAPPRIS P1 TSL 1 (best) BASIC13.69□□□□□ -0.22
CDX1P47902 EPS8L2-218ENST00000530636 2469 ntAPPRIS P2 TSL 1 (best) BASIC13.69□□□□□ -0.22
CDX1P47902 CBS-204ENST00000398165 2605 ntAPPRIS P1 TSL 1 (best) BASIC13.69□□□□□ -0.22
CDX1P47902 CAAP1-201ENST00000333916 2791 ntAPPRIS P1 TSL 1 (best) BASIC13.69□□□□□ -0.22
CDX1P47902 BUB3-201ENST00000368858 1361 ntAPPRIS ALT1 TSL 1 (best) BASIC13.69□□□□□ -0.22
CDX1P47902 OSGIN2-202ENST00000451899 4266 ntAPPRIS P1 TSL 1 (best) BASIC13.69□□□□□ -0.22
CDX1P47902 CPSF4-201ENST00000292476 1691 ntAPPRIS P3 TSL 1 (best) BASIC13.69□□□□□ -0.22
CDX1P47902 SGO1-203ENST00000412997 2587 ntAPPRIS P4 TSL 1 (best) BASIC13.69□□□□□ -0.22
CDX1P47902 NEUROD1-201ENST00000295108 2852 ntAPPRIS P1 TSL 1 (best) BASIC13.69□□□□□ -0.22
CDX1P47902 PPP1R3E-201ENST00000452015 4773 ntAPPRIS P1 TSL 2 BASIC13.68□□□□□ -0.22
CDX1P47902 RHBDF1-201ENST00000262316 2992 ntAPPRIS P1 TSL 1 (best) BASIC13.68□□□□□ -0.22
CDX1P47902 GHDC-201ENST00000301671 2650 ntAPPRIS P1 TSL 2 BASIC13.68□□□□□ -0.22
CDX1P47902 ADAM9-206ENST00000481513 2387 ntTSL 2 BASIC13.68□□□□□ -0.22
CDX1P47902 RAPGEFL1-209ENST00000544503 2079 ntTSL 2 BASIC13.68□□□□□ -0.22
CDX1P47902 CDCP2-202ENST00000530059 1623 ntAPPRIS ALT2 TSL 5 BASIC13.68□□□□□ -0.22
CDX1P47902 RASA4B-202ENST00000465829 2931 ntAPPRIS ALT1 TSL 1 (best) BASIC13.68□□□□□ -0.22
CDX1P47902 RBPJ-205ENST00000355476 5990 ntAPPRIS P3 TSL 1 (best) BASIC13.68□□□□□ -0.22
CDX1P47902 TRIM67-202ENST00000444294 9320 ntAPPRIS ALT1 TSL 5 BASIC13.68□□□□□ -0.22
CDX1P47902 FES-204ENST00000414248 2327 ntTSL 2 BASIC13.68□□□□□ -0.22
CDX1P47902 VPS54-201ENST00000272322 3463 ntAPPRIS P3 TSL 5 BASIC13.68□□□□□ -0.22
CDX1P47902 DHX36-201ENST00000308361 3487 ntTSL 1 (best) BASIC13.68□□□□□ -0.22
CDX1P47902 EGLN1-201ENST00000366641 7097 ntAPPRIS P1 TSL 1 (best) BASIC13.68□□□□□ -0.22
CDX1P47902 VANGL2-201ENST00000368061 5340 ntAPPRIS P1 TSL 2 BASIC13.68□□□□□ -0.22
CDX1P47902 GABRB3-215ENST00000622697 5876 ntTSL 5 BASIC13.68□□□□□ -0.22
CDX1P47902 MMP2-201ENST00000219070 3741 ntAPPRIS P1 TSL 1 (best) BASIC13.68□□□□□ -0.22
CDX1P47902 PMPCAP1-201ENST00000508114 1576 ntBASIC13.68□□□□□ -0.22
CDX1P47902 SMIM29-201ENST00000335352 1160 ntTSL 2 BASIC13.68□□□□□ -0.22
CDX1P47902 PKN1-202ENST00000342216 2960 ntTSL 2 BASIC13.68□□□□□ -0.22
CDX1P47902 CD1E-209ENST00000368164 869 ntTSL 1 (best) BASIC13.68□□□□□ -0.22
CDX1P47902 ROMO1-203ENST00000374077 422 ntAPPRIS P1 TSL 1 (best) BASIC13.68□□□□□ -0.22
CDX1P47902 TLE1-202ENST00000376484 666 ntTSL 3 BASIC13.68□□□□□ -0.22
CDX1P47902 MRPL3P1-201ENST00000400109 1033 ntBASIC13.68□□□□□ -0.22
CDX1P47902 DMKN-206ENST00000418261 1257 ntAPPRIS ALT2 TSL 1 (best) BASIC13.68□□□□□ -0.22
CDX1P47902 LAT-205ENST00000454369 1262 ntAPPRIS ALT2 TSL 5 BASIC13.68□□□□□ -0.22
CDX1P47902 TXNRD2-212ENST00000485358 850 ntTSL 2 BASIC13.68□□□□□ -0.22
CDX1P47902 RNPS1P1-201ENST00000507437 918 ntBASIC13.68□□□□□ -0.22
CDX1P47902 CCNG1-208ENST00000510664 994 ntTSL 5 BASIC13.68□□□□□ -0.22
CDX1P47902 MOK-208ENST00000519058 917 ntTSL 2 BASIC13.68□□□□□ -0.22
CDX1P47902 ATP5G2-204ENST00000549164 745 ntAPPRIS P1 TSL 3 BASIC13.68□□□□□ -0.22
CDX1P47902 GSTZ1-207ENST00000553586 979 ntAPPRIS ALT1 TSL 5 BASIC13.68□□□□□ -0.22
CDX1P47902 SPINT1-AS1-203ENST00000565315 629 ntTSL 2 BASIC13.68□□□□□ -0.22
CDX1P47902 RNPS1-222ENST00000567147 830 ntTSL 3 BASIC13.68□□□□□ -0.22
CDX1P47902 AP001005.1-201ENST00000571755 1248 ntBASIC13.68□□□□□ -0.22
CDX1P47902 FUT6-212ENST00000592563 1095 ntTSL 1 (best) BASIC13.68□□□□□ -0.22
CDX1P47902 ATP5G2-209ENST00000602871 668 ntAPPRIS P1 TSL 2 BASIC13.68□□□□□ -0.22
CDX1P47902 DEF8-228ENST00000610455 816 ntTSL 1 (best) BASIC13.68□□□□□ -0.22
CDX1P47902 LCE1E-203ENST00000619588 267 ntAPPRIS ALT2 TSL 5 BASIC13.68□□□□□ -0.22
CDX1P47902 TP73-AS1-207ENST00000624167 988 ntBASIC13.68□□□□□ -0.22
CDX1P47902 CDR2L-201ENST00000337231 3536 ntAPPRIS P1 TSL 1 (best) BASIC13.68□□□□□ -0.22
Retrieved 100 of 98,524 protein–RNA pairs in 27 ms