Protein–RNA interactions for Protein: P35548

MSX2, Homeobox protein MSX-2, humanhuman

Predicted RBP Predictions only

Length 267 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSX2P35548 MAPK7-202ENST00000308406 3149 ntAPPRIS P1 TSL 1 (best) BASIC15.97■□□□□ 0.15
MSX2P35548 GPR161-202ENST00000367835 2400 ntAPPRIS P1 TSL 2 BASIC15.97■□□□□ 0.15
MSX2P35548 TTC29-202ENST00000398886 1729 ntAPPRIS ALT2 TSL 5 BASIC15.97■□□□□ 0.15
MSX2P35548 CYP51A1-201ENST00000003100 3210 ntAPPRIS P1 TSL 1 (best) BASIC15.97■□□□□ 0.15
MSX2P35548 ABHD16A-201ENST00000395952 2103 ntAPPRIS P1 TSL 1 (best) BASIC15.97■□□□□ 0.15
MSX2P35548 TFAP2A-AS1-201ENST00000420777 1575 ntTSL 5 BASIC15.97■□□□□ 0.15
MSX2P35548 CACNA1G-202ENST00000354983 8138 ntAPPRIS ALT2 TSL 5 BASIC15.97■□□□□ 0.15
MSX2P35548 UBAC2-202ENST00000376440 2525 ntTSL 2 BASIC15.97■□□□□ 0.15
MSX2P35548 ISLR-201ENST00000249842 2371 ntAPPRIS P1 TSL 1 (best) BASIC15.97■□□□□ 0.15
MSX2P35548 JAKMIP1-204ENST00000409831 2371 ntAPPRIS P1 TSL 2 BASIC15.97■□□□□ 0.15
MSX2P35548 RCAN3-210ENST00000618490 2386 ntTSL 1 (best) BASIC15.97■□□□□ 0.15
MSX2P35548 DYRK1B-205ENST00000597639 1806 ntTSL 5 BASIC15.97■□□□□ 0.15
MSX2P35548 CAPN2-201ENST00000295006 3573 ntAPPRIS P1 TSL 1 (best) BASIC15.97■□□□□ 0.15
MSX2P35548 RGR-202ENST00000359452 2247 ntAPPRIS P1 TSL 1 (best) BASIC15.97■□□□□ 0.15
MSX2P35548 USP25-201ENST00000285679 3973 ntAPPRIS P1 TSL 1 (best) BASIC15.97■□□□□ 0.15
MSX2P35548 TMEM53-201ENST00000372235 890 ntTSL 2 BASIC15.97■□□□□ 0.15
MSX2P35548 C1QC-201ENST00000374637 1089 ntAPPRIS P1 TSL 3 BASIC15.97■□□□□ 0.15
MSX2P35548 C2orf82-202ENST00000409230 663 ntAPPRIS P2 TSL 3 BASIC15.97■□□□□ 0.15
MSX2P35548 YBX1P2-201ENST00000489612 999 ntBASIC15.97■□□□□ 0.15
MSX2P35548 PRKCB-209ENST00000498058 480 ntTSL 3 BASIC15.97■□□□□ 0.15
MSX2P35548 AC097372.2-201ENST00000510996 732 ntTSL 3 BASIC15.97■□□□□ 0.15
MSX2P35548 AC103957.2-201ENST00000521218 510 ntTSL 2 BASIC15.97■□□□□ 0.15
MSX2P35548 LY6E-214ENST00000522971 857 ntAPPRIS P2 TSL 2 BASIC15.97■□□□□ 0.15
MSX2P35548 MYL6-203ENST00000536128 1221 ntTSL 2 BASIC15.97■□□□□ 0.15
MSX2P35548 ZNF772-206ENST00000600175 737 ntTSL 2 BASIC15.97■□□□□ 0.15
MSX2P35548 AC124864.1-201ENST00000623408 392 ntBASIC15.97■□□□□ 0.15
MSX2P35548 WDR6-223ENST00000627177 207 ntTSL 2 BASIC15.97■□□□□ 0.15
MSX2P35548 TSPOAP1-202ENST00000343736 5947 ntAPPRIS P3 TSL 1 (best) BASIC15.97■□□□□ 0.15
MSX2P35548 MAP2K5-202ENST00000340972 1491 ntTSL 2 BASIC15.97■□□□□ 0.15
MSX2P35548 CCDC188-201ENST00000439765 1475 ntAPPRIS P1 TSL 5 BASIC15.97■□□□□ 0.15
MSX2P35548 STARD4-203ENST00000502322 1467 ntTSL 1 (best) BASIC15.97■□□□□ 0.15
MSX2P35548 PCBP4-201ENST00000322099 1964 ntAPPRIS P1 TSL 1 (best) BASIC15.96■□□□□ 0.15
MSX2P35548 ABTB1-202ENST00000453791 1961 ntTSL 1 (best) BASIC15.96■□□□□ 0.15
MSX2P35548 SLC20A1-201ENST00000272542 3381 ntAPPRIS P1 TSL 1 (best) BASIC15.96■□□□□ 0.15
MSX2P35548 MLLT10-203ENST00000377072 5126 ntAPPRIS P3 TSL 1 (best) BASIC15.96■□□□□ 0.15
MSX2P35548 DMPK-202ENST00000343373 3227 ntTSL 1 (best) BASIC15.96■□□□□ 0.15
MSX2P35548 EIF5A-204ENST00000416016 1336 ntAPPRIS P1 TSL 1 (best) BASIC15.96■□□□□ 0.15
MSX2P35548 HNRNPRP1-201ENST00000453465 1695 ntBASIC15.96■□□□□ 0.15
MSX2P35548 GGT3P-204ENST00000453783 1664 ntBASIC15.96■□□□□ 0.15
MSX2P35548 BAG1-210ENST00000634734 3786 ntAPPRIS ALT2 TSL 1 (best) BASIC15.96■□□□□ 0.15
MSX2P35548 QRICH1-202ENST00000395443 3549 ntAPPRIS P1 TSL 1 (best) BASIC15.96■□□□□ 0.15
MSX2P35548 ACSL1-202ENST00000454703 3636 ntTSL 5 BASIC15.96■□□□□ 0.15
MSX2P35548 C7orf43-207ENST00000457641 2005 ntTSL 5 BASIC15.96■□□□□ 0.15
MSX2P35548 TMEM101-201ENST00000206380 1536 ntAPPRIS P1 TSL 1 (best) BASIC15.96■□□□□ 0.15
MSX2P35548 AP001922.1-201ENST00000499390 1504 ntTSL 1 (best) BASIC15.96■□□□□ 0.15
MSX2P35548 EXOC3L2-201ENST00000252482 1230 ntTSL 1 (best) BASIC15.96■□□□□ 0.15
MSX2P35548 AC003669.1-201ENST00000334569 611 ntBASIC15.96■□□□□ 0.15
MSX2P35548 RABL2A-202ENST00000393165 1118 ntAPPRIS ALT2 TSL 1 (best) BASIC15.96■□□□□ 0.15
MSX2P35548 RPL8-202ENST00000394920 965 ntAPPRIS P1 TSL 1 (best) BASIC15.96■□□□□ 0.15
MSX2P35548 MCF2L-207ENST00000397024 490 ntTSL 5 BASIC15.96■□□□□ 0.15
MSX2P35548 LIN28AP1-201ENST00000429574 405 ntBASIC15.96■□□□□ 0.15
MSX2P35548 ATP5G1P1-201ENST00000448724 379 ntBASIC15.96■□□□□ 0.15
MSX2P35548 RN7SL606P-201ENST00000472779 293 ntBASIC15.96■□□□□ 0.15
MSX2P35548 NUBP2-206ENST00000565134 815 ntTSL 5 BASIC15.96■□□□□ 0.15
MSX2P35548 P4HB-223ENST00000576390 439 ntTSL 4 BASIC15.96■□□□□ 0.15
MSX2P35548 AC004130.1-202ENST00000603156 666 ntTSL 2 BASIC15.96■□□□□ 0.15
MSX2P35548 C10orf142-201ENST00000619243 1110 ntAPPRIS P2 TSL 2 BASIC15.96■□□□□ 0.15
MSX2P35548 DFFB-212ENST00000625756 649 ntTSL 5 BASIC15.96■□□□□ 0.15
MSX2P35548 SHISA9-203ENST00000558583 6724 ntAPPRIS P4 TSL 5 BASIC15.96■□□□□ 0.15
MSX2P35548 TXNDC2-201ENST00000306084 1873 ntAPPRIS ALT2 TSL 1 (best) BASIC15.96■□□□□ 0.15
MSX2P35548 SLFNL1-203ENST00000372611 1865 ntAPPRIS ALT2 TSL 2 BASIC15.96■□□□□ 0.15
MSX2P35548 RSPO1-203ENST00000612451 2463 ntTSL 1 (best) BASIC15.96■□□□□ 0.15
MSX2P35548 MTA2-201ENST00000278823 3058 ntAPPRIS P1 TSL 1 (best) BASIC15.96■□□□□ 0.15
MSX2P35548 CSF3-206ENST00000577675 1360 ntTSL 1 (best) BASIC15.96■□□□□ 0.15
MSX2P35548 HOXA3-202ENST00000396352 3263 ntAPPRIS P1 TSL 1 (best) BASIC15.96■□□□□ 0.15
MSX2P35548 HIST1H2BN-204ENST00000612898 1723 ntAPPRIS P1 BASIC15.96■□□□□ 0.15
MSX2P35548 LINC00937-207ENST00000544461 3033 ntTSL 2 BASIC15.96■□□□□ 0.15
MSX2P35548 SLC25A48-203ENST00000425402 2062 ntTSL 5 BASIC15.96■□□□□ 0.15
MSX2P35548 FOS-208ENST00000555686 1496 ntTSL 2 BASIC15.96■□□□□ 0.14
MSX2P35548 PTPN5-201ENST00000358540 3135 ntTSL 1 (best) BASIC15.96■□□□□ 0.14
MSX2P35548 TBXAS1-201ENST00000336425 2185 ntAPPRIS P1 TSL 1 (best) BASIC15.96■□□□□ 0.14
MSX2P35548 HS6ST2-201ENST00000370833 1938 ntTSL 5 BASIC15.96■□□□□ 0.14
MSX2P35548 CLDN14-204ENST00000399137 1942 ntAPPRIS P1 TSL 1 (best) BASIC15.96■□□□□ 0.14
MSX2P35548 KCNT1-211ENST00000491806 3678 ntAPPRIS ALT2 TSL 5 BASIC15.96■□□□□ 0.14
MSX2P35548 KIAA1211-201ENST00000264229 4109 ntAPPRIS P2 TSL 2 BASIC15.96■□□□□ 0.14
MSX2P35548 BICDL1-201ENST00000397558 3055 ntAPPRIS P1 TSL 5 BASIC15.96■□□□□ 0.14
MSX2P35548 CC2D1B-202ENST00000371586 5642 ntAPPRIS P3 TSL 5 BASIC15.96■□□□□ 0.14
MSX2P35548 ABCG4-205ENST00000619701 3852 ntAPPRIS P1 TSL 1 (best) BASIC15.95■□□□□ 0.14
MSX2P35548 RPLP0-219ENST00000551150 1344 ntAPPRIS P1 TSL 1 (best) BASIC15.95■□□□□ 0.14
MSX2P35548 NEK11-210ENST00000510769 2149 ntTSL 2 BASIC15.95■□□□□ 0.14
MSX2P35548 RPL13P5-202ENST00000412023 1438 ntTSL 2 BASIC15.95■□□□□ 0.14
MSX2P35548 CRB3-203ENST00000598494 1443 ntAPPRIS ALT2 TSL 2 BASIC15.95■□□□□ 0.14
MSX2P35548 LMNA-201ENST00000347559 3137 ntTSL 5 BASIC15.95■□□□□ 0.14
MSX2P35548 HOXC12-201ENST00000243103 3335 ntAPPRIS P1 TSL 1 (best) BASIC15.95■□□□□ 0.14
MSX2P35548 SLC6A13-201ENST00000343164 2185 ntAPPRIS P1 TSL 1 (best) BASIC15.95■□□□□ 0.14
MSX2P35548 RGN-203ENST00000397180 2257 ntAPPRIS P1 TSL 5 BASIC15.95■□□□□ 0.14
MSX2P35548 FGF8-201ENST00000320185 799 ntAPPRIS P4 TSL 1 (best) BASIC15.95■□□□□ 0.14
MSX2P35548 BEX1-201ENST00000372728 864 ntAPPRIS P1 TSL 1 (best) BASIC15.95■□□□□ 0.14
MSX2P35548 POLR2J-202ENST00000393794 784 ntTSL 1 (best) BASIC15.95■□□□□ 0.14
MSX2P35548 AC112907.2-201ENST00000448639 330 ntBASIC15.95■□□□□ 0.14
MSX2P35548 MEG3-211ENST00000452514 461 ntTSL 3 BASIC15.95■□□□□ 0.14
MSX2P35548 GUSBP12-201ENST00000513727 720 ntBASIC15.95■□□□□ 0.14
MSX2P35548 AC087623.2-201ENST00000528407 534 ntTSL 4 BASIC15.95■□□□□ 0.14
MSX2P35548 TUBA1A-203ENST00000546918 984 ntTSL 3 BASIC15.95■□□□□ 0.14
MSX2P35548 RDH5-202ENST00000547072 1054 ntTSL 5 BASIC15.95■□□□□ 0.14
MSX2P35548 C17orf62-221ENST00000581196 668 ntTSL 4 BASIC15.95■□□□□ 0.14
MSX2P35548 CALM3-208ENST00000596362 1203 ntAPPRIS P1 TSL 2 BASIC15.95■□□□□ 0.14
MSX2P35548 HYMAI.1-201ENST00000620949 238 ntBASIC15.95■□□□□ 0.14
MSX2P35548 ASAH1-251ENST00000637561 929 ntTSL 2 BASIC15.95■□□□□ 0.14
MSX2P35548 MFRP-205ENST00000619721 3917 ntAPPRIS P1 TSL 1 (best) BASIC15.95■□□□□ 0.14
Retrieved 100 of 98,524 protein–RNA pairs in 44.8 ms