Protein–RNA interactions for Protein: P29400

COL4A5, Collagen alpha-5(IV) chain, humanhuman

Predictions only

Length 1,685 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A5P29400 AL512625.3-203ENST00000445604 1602 ntTSL 5 BASIC19.65■□□□□ 0.74
COL4A5P29400 POLR1D-221ENST00000637180 2262 ntTSL 5 BASIC19.65■□□□□ 0.74
COL4A5P29400 HECA-201ENST00000367658 5614 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
COL4A5P29400 CRYM-201ENST00000219599 1471 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
COL4A5P29400 LCE1E-202ENST00000368771 575 ntAPPRIS P2 TSL 3 BASIC19.65■□□□□ 0.74
COL4A5P29400 MAGEA12-203ENST00000393900 1299 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
COL4A5P29400 KIF9-205ENST00000432493 633 ntTSL 1 (best) BASIC19.65■□□□□ 0.74
COL4A5P29400 RNASEK-C17orf49-201ENST00000547302 900 ntAPPRIS P1 TSL 5 BASIC19.65■□□□□ 0.74
COL4A5P29400 AC138028.3-201ENST00000561699 213 ntTSL 3 BASIC19.65■□□□□ 0.74
COL4A5P29400 AC007611.1-201ENST00000568150 826 ntTSL 2 BASIC19.65■□□□□ 0.74
COL4A5P29400 AC068587.10-201ENST00000641210 219 ntBASIC19.65■□□□□ 0.74
COL4A5P29400 AL139011.1-202ENST00000642063 584 ntBASIC19.65■□□□□ 0.74
COL4A5P29400 SAMD4A-208ENST00000555192 1337 ntTSL 1 (best) BASIC19.64■□□□□ 0.74
COL4A5P29400 TUBBP5-201ENST00000290377 1563 ntTSL 1 (best) BASIC19.64■□□□□ 0.74
COL4A5P29400 CT62-201ENST00000449977 1825 ntAPPRIS P2 TSL 1 (best) BASIC19.64■□□□□ 0.74
COL4A5P29400 AL645728.1-201ENST00000366221 2101 ntBASIC19.64■□□□□ 0.74
COL4A5P29400 CERS5-203ENST00000422340 2855 ntAPPRIS ALT2 TSL 2 BASIC19.64■□□□□ 0.74
COL4A5P29400 ZNF133-212ENST00000622607 2660 ntAPPRIS ALT2 TSL 4 BASIC19.64■□□□□ 0.74
COL4A5P29400 TCEA2-203ENST00000361317 1427 ntTSL 2 BASIC19.64■□□□□ 0.73
COL4A5P29400 PSMC3IP-202ENST00000393795 1416 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.73
COL4A5P29400 FAM193A-211ENST00000637812 4885 ntAPPRIS ALT2 TSL 5 BASIC19.64■□□□□ 0.73
COL4A5P29400 AFMID-201ENST00000327898 1700 ntAPPRIS ALT2 TSL 1 (best) BASIC19.64■□□□□ 0.73
COL4A5P29400 C14orf180-202ENST00000410013 2009 ntAPPRIS P3 TSL 1 (best) BASIC19.64■□□□□ 0.73
COL4A5P29400 TIMM50-202ENST00000544017 2572 ntAPPRIS P2 TSL 1 (best) BASIC19.64■□□□□ 0.73
COL4A5P29400 ASCC1-205ENST00000394919 2683 ntAPPRIS P1 TSL 2 BASIC19.64■□□□□ 0.73
COL4A5P29400 MRPL55-202ENST00000336300 722 ntAPPRIS P1 TSL 2 BASIC19.64■□□□□ 0.73
COL4A5P29400 HRCT1-201ENST00000354323 950 ntAPPRIS P1 BASIC19.64■□□□□ 0.73
COL4A5P29400 MRPL55-206ENST00000366732 722 ntTSL 3 BASIC19.64■□□□□ 0.73
COL4A5P29400 AL161638.1-201ENST00000420354 481 ntTSL 3 BASIC19.64■□□□□ 0.73
COL4A5P29400 AF274855.1-203ENST00000424126 800 ntTSL 3 BASIC19.64■□□□□ 0.73
COL4A5P29400 SFTPC-202ENST00000437090 773 ntTSL 3 BASIC19.64■□□□□ 0.73
COL4A5P29400 CSF2RBP1-201ENST00000447905 391 ntBASIC19.64■□□□□ 0.73
COL4A5P29400 AC008750.2-202ENST00000532688 729 ntTSL 3 BASIC19.64■□□□□ 0.73
COL4A5P29400 C12orf57-206ENST00000544681 980 ntTSL 2 BASIC19.64■□□□□ 0.73
COL4A5P29400 AL390726.5-201ENST00000562942 871 ntTSL 2 BASIC19.64■□□□□ 0.73
COL4A5P29400 GOLPH3-201ENST00000265070 2721 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.73
COL4A5P29400 GNS-208ENST00000543646 2164 ntAPPRIS ALT2 TSL 2 BASIC19.64■□□□□ 0.73
COL4A5P29400 CALM1-216ENST00000626705 1341 ntTSL 5 BASIC19.64■□□□□ 0.73
COL4A5P29400 CPSF4-201ENST00000292476 1691 ntAPPRIS P3 TSL 1 (best) BASIC19.64■□□□□ 0.73
COL4A5P29400 TGIF1-205ENST00000401449 1670 ntTSL 2 BASIC19.64■□□□□ 0.73
COL4A5P29400 ENOSF1-209ENST00000580982 1397 ntTSL 5 BASIC19.64■□□□□ 0.73
COL4A5P29400 EVA1A-205ENST00000410113 1747 ntAPPRIS P2 TSL 3 BASIC19.64■□□□□ 0.73
COL4A5P29400 WDR45-239ENST00000634944 1745 ntAPPRIS P1 TSL 5 BASIC19.64■□□□□ 0.73
COL4A5P29400 AHSA1-201ENST00000216479 1402 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.73
COL4A5P29400 HSD17B7P2-202ENST00000494540 1401 ntTSL 1 (best) BASIC19.64■□□□□ 0.73
COL4A5P29400 PEX5L-206ENST00000465751 2147 ntAPPRIS ALT2 TSL 2 BASIC19.63■□□□□ 0.73
COL4A5P29400 NBL1-213ENST00000622566 2109 ntAPPRIS P3 TSL 4 BASIC19.63■□□□□ 0.73
COL4A5P29400 OR2C3-203ENST00000617752 2481 ntAPPRIS P1 BASIC19.63■□□□□ 0.73
COL4A5P29400 TBXA2R-204ENST00000589966 1814 ntTSL 1 (best) BASIC19.63■□□□□ 0.73
COL4A5P29400 AL139300.1-201ENST00000472726 2505 ntAPPRIS P1 TSL 2 BASIC19.63■□□□□ 0.73
COL4A5P29400 ZNF773-201ENST00000282292 2206 ntAPPRIS P3 TSL 1 (best) BASIC19.63■□□□□ 0.73
COL4A5P29400 EWSR1-207ENST00000406548 2207 ntAPPRIS ALT2 TSL 1 (best) BASIC19.63■□□□□ 0.73
COL4A5P29400 STIM2-212ENST00000639640 2241 ntAPPRIS P3 TSL 1 (best) BASIC19.63■□□□□ 0.73
COL4A5P29400 ARHGAP28-203ENST00000383472 2295 ntAPPRIS ALT2 TSL 5 BASIC19.63■□□□□ 0.73
COL4A5P29400 INPP5J-213ENST00000620191 2306 ntTSL 1 (best) BASIC19.63■□□□□ 0.73
COL4A5P29400 Z97205.2-201ENST00000564697 1639 ntBASIC19.63■□□□□ 0.73
COL4A5P29400 AGAP6-201ENST00000374056 2703 ntAPPRIS ALT2 TSL 1 (best) BASIC19.63■□□□□ 0.73
COL4A5P29400 VCX3B-204ENST00000453306 868 ntAPPRIS ALT2 TSL 5 BASIC19.63■□□□□ 0.73
COL4A5P29400 COMMD4-217ENST00000567195 677 ntTSL 2 BASIC19.63■□□□□ 0.73
COL4A5P29400 RN7SL219P-201ENST00000582872 296 ntBASIC19.63■□□□□ 0.73
COL4A5P29400 AC020911.1-201ENST00000591038 578 ntTSL 2 BASIC19.63■□□□□ 0.73
COL4A5P29400 ACTRT3-201ENST00000330368 2005 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
COL4A5P29400 ATP5S-201ENST00000245448 1671 ntTSL 1 (best) BASIC19.63■□□□□ 0.73
COL4A5P29400 ECE2-205ENST00000404464 3229 ntTSL 1 (best) BASIC19.63■□□□□ 0.73
COL4A5P29400 PCDHA6-202ENST00000527624 2231 ntTSL 1 (best) BASIC19.63■□□□□ 0.73
COL4A5P29400 WNT10B-201ENST00000301061 2274 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
COL4A5P29400 LRRC45-201ENST00000306688 2701 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
COL4A5P29400 LINC00461-203ENST00000504246 2300 ntTSL 2 BASIC19.63■□□□□ 0.73
COL4A5P29400 AL109910.2-201ENST00000607733 1953 ntTSL 2 BASIC19.63■□□□□ 0.73
COL4A5P29400 LAT-203ENST00000395456 1616 ntAPPRIS ALT2 TSL 1 (best) BASIC19.63■□□□□ 0.73
COL4A5P29400 AC011474.1-201ENST00000582581 2582 ntTSL 2 BASIC19.63■□□□□ 0.73
COL4A5P29400 NRBP1-203ENST00000379852 2163 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
COL4A5P29400 OSBPL5-208ENST00000478260 2653 ntTSL 2 BASIC19.62■□□□□ 0.73
COL4A5P29400 RSPO4-201ENST00000217260 2707 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
COL4A5P29400 LNCPRESS1-201ENST00000429254 756 ntTSL 1 (best) BASIC19.62■□□□□ 0.73
COL4A5P29400 SELENOT-203ENST00000477889 944 ntTSL 5 BASIC19.62■□□□□ 0.73
COL4A5P29400 SLC25A47P1-201ENST00000531577 414 ntBASIC19.62■□□□□ 0.73
COL4A5P29400 COTL1-201ENST00000262428 1843 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
COL4A5P29400 ALAS2-203ENST00000396198 1936 ntTSL 5 BASIC19.62■□□□□ 0.73
COL4A5P29400 HAPLN3-201ENST00000359595 1980 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
COL4A5P29400 AMT-232ENST00000636199 1546 ntTSL 5 BASIC19.62■□□□□ 0.73
COL4A5P29400 FGFBP3-201ENST00000311575 2545 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
COL4A5P29400 STAMBPL1-203ENST00000371926 2532 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
COL4A5P29400 DUSP18-206ENST00000407308 1978 ntAPPRIS P1 TSL 5 BASIC19.62■□□□□ 0.73
COL4A5P29400 ACOT12-201ENST00000307624 2086 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
COL4A5P29400 PLA2G5-201ENST00000375108 1161 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
COL4A5P29400 AC005229.1-201ENST00000392885 409 ntBASIC19.62■□□□□ 0.73
COL4A5P29400 P3H2-AS1-201ENST00000412203 730 ntTSL 5 BASIC19.62■□□□□ 0.73
COL4A5P29400 AC243836.1-201ENST00000416696 438 ntTSL 3 BASIC19.62■□□□□ 0.73
COL4A5P29400 KRT43P-201ENST00000434019 910 ntBASIC19.62■□□□□ 0.73
COL4A5P29400 HNRNPA1P13-201ENST00000510646 963 ntBASIC19.62■□□□□ 0.73
COL4A5P29400 C8orf88-201ENST00000517562 894 ntAPPRIS P1 TSL 2 BASIC19.62■□□□□ 0.73
COL4A5P29400 AC012322.1-201ENST00000561657 861 ntTSL 3 BASIC19.62■□□□□ 0.73
COL4A5P29400 LITAF-218ENST00000576036 603 ntAPPRIS P1 TSL 4 BASIC19.62■□□□□ 0.73
COL4A5P29400 AC079336.2-201ENST00000578408 927 ntTSL 3 BASIC19.62■□□□□ 0.73
COL4A5P29400 EHBP1L1-201ENST00000309295 5185 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
COL4A5P29400 RNLS-201ENST00000331772 1447 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
COL4A5P29400 IL3RA-202ENST00000381469 1476 ntTSL 5 BASIC19.61■□□□□ 0.73
COL4A5P29400 PPP1R1B-205ENST00000579000 1466 ntTSL 5 BASIC19.61■□□□□ 0.73
COL4A5P29400 SCARF1-202ENST00000348987 2619 ntTSL 1 (best) BASIC19.61■□□□□ 0.73
Retrieved 100 of 98,524 protein–RNA pairs in 47.4 ms