Protein–RNA interactions for Protein: P22223

CDH3, Cadherin-3, humanhuman

Predictions only

Length 829 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CDH3P22223 AQP6-205ENST00000618286 829 ntTSL 5 BASIC16.4■□□□□ 0.22
CDH3P22223 HOTTIP_1.1-201ENST00000620415 57 ntBASIC16.4■□□□□ 0.22
CDH3P22223 AL513190.1-201ENST00000621254 727 ntBASIC16.4■□□□□ 0.22
CDH3P22223 ASTN2-205ENST00000361209 4622 ntAPPRIS P2 TSL 1 (best) BASIC16.4■□□□□ 0.22
CDH3P22223 ARHGEF40-201ENST00000298694 5919 ntAPPRIS P1 TSL 2 BASIC16.4■□□□□ 0.22
CDH3P22223 SHOX-204ENST00000554971 1902 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
CDH3P22223 RBM6-210ENST00000442092 2260 ntTSL 1 (best) BASIC16.4■□□□□ 0.22
CDH3P22223 ARFRP1-212ENST00000618838 1623 ntAPPRIS P1 TSL 5 BASIC16.4■□□□□ 0.22
CDH3P22223 CACFD1-202ENST00000316948 2794 ntAPPRIS P3 TSL 1 (best) BASIC16.4■□□□□ 0.22
CDH3P22223 PSMD6-210ENST00000492933 1495 ntTSL 1 (best) BASIC16.4■□□□□ 0.22
CDH3P22223 EPN1-203ENST00000411543 2621 ntTSL 1 (best) BASIC16.4■□□□□ 0.22
CDH3P22223 MKNK2-201ENST00000250896 3774 ntAPPRIS P4 TSL 5 BASIC16.4■□□□□ 0.22
CDH3P22223 SLC39A8-201ENST00000356736 3144 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
CDH3P22223 PACS2-205ENST00000547217 2809 ntTSL 5 BASIC16.4■□□□□ 0.22
CDH3P22223 IL12RB2-205ENST00000541374 3849 ntTSL 1 (best) BASIC16.4■□□□□ 0.22
CDH3P22223 RPL3L-201ENST00000268661 2182 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
CDH3P22223 NPL-204ENST00000367554 3027 ntTSL 1 (best) BASIC16.4■□□□□ 0.22
CDH3P22223 ZNF618-203ENST00000374126 3018 ntAPPRIS ALT2 TSL 1 (best) BASIC16.4■□□□□ 0.22
CDH3P22223 C5orf24-202ENST00000394976 5065 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
CDH3P22223 HLA-F-218ENST00000376861 1544 ntAPPRIS ALT2 BASIC16.4■□□□□ 0.22
CDH3P22223 CACNA1A-238ENST00000637276 7135 ntAPPRIS ALT2 TSL 5 BASIC16.4■□□□□ 0.22
CDH3P22223 ABCC3-202ENST00000427699 1881 ntTSL 1 (best) BASIC16.39■□□□□ 0.22
CDH3P22223 MAEA-202ENST00000303400 2222 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.22
CDH3P22223 SYCE1-203ENST00000368517 1377 ntAPPRIS P3 TSL 5 BASIC16.39■□□□□ 0.21
CDH3P22223 TUBA4B-203ENST00000490341 1380 ntAPPRIS P1 TSL 2 BASIC16.39■□□□□ 0.21
CDH3P22223 ATP2B1-AS1-201ENST00000605386 3632 ntBASIC16.39■□□□□ 0.21
CDH3P22223 THNSL2-202ENST00000343544 2052 ntTSL 1 (best) BASIC16.39■□□□□ 0.21
CDH3P22223 MDFIC-202ENST00000393486 4393 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
CDH3P22223 CTDSP2-201ENST00000398073 4795 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
CDH3P22223 ZBTB17-216ENST00000537142 2511 ntTSL 2 BASIC16.39■□□□□ 0.21
CDH3P22223 CGREF1-201ENST00000260595 1177 ntAPPRIS ALT2 TSL 5 BASIC16.39■□□□□ 0.21
CDH3P22223 TYROBP-201ENST00000262629 568 ntAPPRIS P3 TSL 1 (best) BASIC16.39■□□□□ 0.21
CDH3P22223 TRA2B-202ENST00000342294 288 ntTSL 1 (best) BASIC16.39■□□□□ 0.21
CDH3P22223 SMN1-201ENST00000351205 900 ntAPPRIS P3 TSL 1 (best) BASIC16.39■□□□□ 0.21
CDH3P22223 SMN2-201ENST00000380741 900 ntAPPRIS P4 TSL 1 (best) BASIC16.39■□□□□ 0.21
CDH3P22223 BX276092.7-202ENST00000422194 696 ntTSL 3 BASIC16.39■□□□□ 0.21
CDH3P22223 GPX1P2-201ENST00000429271 606 ntBASIC16.39■□□□□ 0.21
CDH3P22223 MRPL52-208ENST00000553711 586 ntTSL 3 BASIC16.39■□□□□ 0.21
CDH3P22223 AC023355.1-201ENST00000560323 752 ntTSL 3 BASIC16.39■□□□□ 0.21
CDH3P22223 AC139530.3-201ENST00000620344 690 ntBASIC16.39■□□□□ 0.21
CDH3P22223 SMN2-216ENST00000638794 846 ntAPPRIS ALT2 TSL 5 BASIC16.39■□□□□ 0.21
CDH3P22223 BANP-201ENST00000286122 2368 ntTSL 5 BASIC16.39■□□□□ 0.21
CDH3P22223 BBS5-201ENST00000295240 3475 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
CDH3P22223 TMED9-201ENST00000332598 1473 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
CDH3P22223 FAM53B-AS1-202ENST00000448422 1491 ntTSL 1 (best) BASIC16.39■□□□□ 0.21
CDH3P22223 PC-214ENST00000628663 1470 ntTSL 5 BASIC16.39■□□□□ 0.21
CDH3P22223 SAP130-202ENST00000259235 4065 ntTSL 1 (best) BASIC16.39■□□□□ 0.21
CDH3P22223 KCNQ2-236ENST00000637193 2983 ntTSL 5 BASIC16.39■□□□□ 0.21
CDH3P22223 MAPK8IP2-202ENST00000329492 3381 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
CDH3P22223 KHNYN-202ENST00000553935 3359 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
CDH3P22223 CCR7-203ENST00000579344 1874 ntTSL 1 (best) BASIC16.39■□□□□ 0.21
CDH3P22223 RUFY2-203ENST00000388768 4502 ntTSL 2 BASIC16.39■□□□□ 0.21
CDH3P22223 STBD1-201ENST00000237642 3420 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
CDH3P22223 NAA30-204ENST00000556492 7644 ntAPPRIS P2 TSL 1 (best) BASIC16.39■□□□□ 0.21
CDH3P22223 ARHGEF4-205ENST00000409359 5489 ntTSL 5 BASIC16.39■□□□□ 0.21
CDH3P22223 NFKBIA-201ENST00000216797 1558 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
CDH3P22223 VAV2-202ENST00000371851 5101 ntAPPRIS ALT2 TSL 5 BASIC16.38■□□□□ 0.21
CDH3P22223 TMUB2-209ENST00000587989 1969 ntAPPRIS ALT1 TSL 3 BASIC16.38■□□□□ 0.21
CDH3P22223 KCNJ8-201ENST00000240662 2389 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
CDH3P22223 TBC1D30-203ENST00000539867 2594 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
CDH3P22223 ZNF764-202ENST00000395091 2970 ntAPPRIS ALT1 TSL 2 BASIC16.38■□□□□ 0.21
CDH3P22223 CLSTN1-201ENST00000361311 4647 ntAPPRIS P3 TSL 1 (best) BASIC16.38■□□□□ 0.21
CDH3P22223 OSGIN1-202ENST00000361711 2230 ntAPPRIS P1 TSL 2 BASIC16.38■□□□□ 0.21
CDH3P22223 CYHR1-204ENST00000438911 2020 ntAPPRIS P1 TSL 2 BASIC16.38■□□□□ 0.21
CDH3P22223 HS6ST2-203ENST00000406696 1818 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
CDH3P22223 CACNA1A-258ENST00000638029 7814 ntAPPRIS ALT2 TSL 5 BASIC16.38■□□□□ 0.21
CDH3P22223 WDR6-202ENST00000415265 1883 ntTSL 2 BASIC16.38■□□□□ 0.21
CDH3P22223 ELOVL7-205ENST00000508821 3994 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
CDH3P22223 AC116353.5-201ENST00000638148 1699 ntBASIC16.38■□□□□ 0.21
CDH3P22223 OTUD7A-201ENST00000307050 10770 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
CDH3P22223 AL021453.1-201ENST00000333487 2989 ntTSL 2 BASIC16.38■□□□□ 0.21
CDH3P22223 CKLF-204ENST00000362093 412 ntAPPRIS ALT2 TSL 1 (best) BASIC16.38■□□□□ 0.21
CDH3P22223 RPSAP43-201ENST00000402237 625 ntBASIC16.38■□□□□ 0.21
CDH3P22223 GNB2-205ENST00000419828 1285 ntTSL 5 BASIC16.38■□□□□ 0.21
CDH3P22223 RHOQP3-201ENST00000437982 621 ntBASIC16.38■□□□□ 0.21
CDH3P22223 FAM185BP-201ENST00000443595 716 ntBASIC16.38■□□□□ 0.21
CDH3P22223 AL513480.1-201ENST00000451731 511 ntBASIC16.38■□□□□ 0.21
CDH3P22223 AC243965.1-201ENST00000557595 781 ntTSL 3 BASIC16.38■□□□□ 0.21
CDH3P22223 AC126696.3-201ENST00000563993 575 ntTSL 4 BASIC16.38■□□□□ 0.21
CDH3P22223 LINC01842-201ENST00000588275 768 ntTSL 1 (best) BASIC16.38■□□□□ 0.21
CDH3P22223 SLC12A5-209ENST00000616201 2955 ntTSL 5 BASIC16.38■□□□□ 0.21
CDH3P22223 ABLIM2-201ENST00000341937 2589 ntAPPRIS ALT2 TSL 1 (best) BASIC16.38■□□□□ 0.21
CDH3P22223 LINC00887-203ENST00000429578 1717 ntTSL 2 BASIC16.38■□□□□ 0.21
CDH3P22223 SEPT4-201ENST00000317256 1530 ntAPPRIS ALT2 TSL 1 (best) BASIC16.38■□□□□ 0.21
CDH3P22223 PRKN-202ENST00000366892 1505 ntTSL 5 BASIC16.38■□□□□ 0.21
CDH3P22223 FGFR4-207ENST00000502906 2638 ntAPPRIS P4 TSL 1 (best) BASIC16.38■□□□□ 0.21
CDH3P22223 CTSB-228ENST00000533455 2009 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
CDH3P22223 PFN2-201ENST00000239940 2261 ntAPPRIS P3 TSL 1 (best) BASIC16.38■□□□□ 0.21
CDH3P22223 SIN3B-206ENST00000595541 2767 ntTSL 2 BASIC16.38■□□□□ 0.21
CDH3P22223 AP004609.1-201ENST00000498872 1646 ntTSL 1 (best) BASIC16.37■□□□□ 0.21
CDH3P22223 C20orf166-AS1-201ENST00000412495 2302 ntTSL 2 BASIC16.37■□□□□ 0.21
CDH3P22223 PCDHB17P-201ENST00000539533 2393 ntBASIC16.37■□□□□ 0.21
CDH3P22223 AC025580.3-201ENST00000617932 1424 ntBASIC16.37■□□□□ 0.21
CDH3P22223 ADCY1-202ENST00000432715 1693 ntTSL 2 BASIC16.37■□□□□ 0.21
CDH3P22223 UBE3D-203ENST00000369747 1917 ntAPPRIS P1 TSL 1 (best) BASIC16.37■□□□□ 0.21
CDH3P22223 SELENBP1-204ENST00000426705 1928 ntTSL 2 BASIC16.37■□□□□ 0.21
CDH3P22223 ABLIM2-203ENST00000361737 3396 ntAPPRIS ALT2 TSL 2 BASIC16.37■□□□□ 0.21
CDH3P22223 NSMCE3-201ENST00000332303 4838 ntAPPRIS P1 BASIC16.37■□□□□ 0.21
CDH3P22223 ARL6IP1-201ENST00000304414 2409 ntAPPRIS P1 TSL 1 (best) BASIC16.37■□□□□ 0.21
CDH3P22223 FOXP1-218ENST00000498215 2400 ntAPPRIS P3 TSL 2 BASIC16.37■□□□□ 0.21
Retrieved 100 of 98,524 protein–RNA pairs in 23.9 ms