Protein–RNA interactions for Protein: P20908

COL5A1, Collagen alpha-1(V) chain, humanhuman

Predicted RBP Predictions only

Length 1,838 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL5A1P20908 DOCK9-206ENST00000427887 4176 ntTSL 1 (best) BASIC15.74■□□□□ 0.11
COL5A1P20908 URI1-202ENST00000392271 3444 ntAPPRIS P3 TSL 1 (best) BASIC15.74■□□□□ 0.11
COL5A1P20908 AC092143.3-201ENST00000565150 1900 ntTSL 5 BASIC15.74■□□□□ 0.11
COL5A1P20908 AC092053.1-201ENST00000605787 1936 ntBASIC15.74■□□□□ 0.11
COL5A1P20908 BCAR1-201ENST00000162330 3221 ntAPPRIS P3 TSL 1 (best) BASIC15.74■□□□□ 0.11
COL5A1P20908 TAAR5-201ENST00000258034 1014 ntAPPRIS P1 BASIC15.74■□□□□ 0.11
COL5A1P20908 AL513303.2-201ENST00000413339 536 ntTSL 2 BASIC15.74■□□□□ 0.11
COL5A1P20908 ZNF589-204ENST00000440261 917 ntTSL 2 BASIC15.74■□□□□ 0.11
COL5A1P20908 MAGI2-AS3-208ENST00000446159 670 ntTSL 3 BASIC15.74■□□□□ 0.11
COL5A1P20908 AC140481.1-201ENST00000448777 706 ntTSL 3 BASIC15.74■□□□□ 0.11
COL5A1P20908 RHOA-206ENST00000454011 889 ntTSL 2 BASIC15.74■□□□□ 0.11
COL5A1P20908 MPZL1-209ENST00000474859 630 ntTSL 1 (best) BASIC15.74■□□□□ 0.11
COL5A1P20908 SERF1A-205ENST00000507348 663 ntTSL 2 BASIC15.74■□□□□ 0.11
COL5A1P20908 SDHAP3-202ENST00000515467 728 ntBASIC15.74■□□□□ 0.11
COL5A1P20908 CTBP2P3-201ENST00000585629 1255 ntBASIC15.74■□□□□ 0.11
COL5A1P20908 ELOF1-208ENST00000591912 899 ntTSL 5 BASIC15.74■□□□□ 0.11
COL5A1P20908 HIST1H3I-201ENST00000616365 411 ntAPPRIS P1 BASIC15.74■□□□□ 0.11
COL5A1P20908 TRAF2-201ENST00000247668 2264 ntAPPRIS P1 TSL 1 (best) BASIC15.74■□□□□ 0.11
COL5A1P20908 CCDC144A-210ENST00000456009 2306 ntTSL 5 BASIC15.74■□□□□ 0.11
COL5A1P20908 GTPBP8-202ENST00000383677 1787 ntTSL 3 BASIC15.74■□□□□ 0.11
COL5A1P20908 KAT7-213ENST00000510819 1769 ntTSL 2 BASIC15.74■□□□□ 0.11
COL5A1P20908 EIF3C-211ENST00000566866 2986 ntAPPRIS P1 TSL 1 (best) BASIC15.74■□□□□ 0.11
COL5A1P20908 AC120498.9-201ENST00000339021 3867 ntBASIC15.74■□□□□ 0.11
COL5A1P20908 JMJD4-201ENST00000366758 2595 ntTSL 1 (best) BASIC15.74■□□□□ 0.11
COL5A1P20908 PNPO-201ENST00000225573 2256 ntTSL 1 (best) BASIC15.74■□□□□ 0.11
COL5A1P20908 ZNF302-202ENST00000446502 2635 ntAPPRIS ALT2 TSL 2 BASIC15.73■□□□□ 0.11
COL5A1P20908 SMPD1-201ENST00000342245 2452 ntAPPRIS ALT1 TSL 1 (best) BASIC15.73■□□□□ 0.11
COL5A1P20908 PPP1R13B-201ENST00000202556 4958 ntAPPRIS P1 TSL 1 (best) BASIC15.73■□□□□ 0.11
COL5A1P20908 DYDC2-202ENST00000372197 2022 ntAPPRIS P3 TSL 1 (best) BASIC15.73■□□□□ 0.11
COL5A1P20908 HCRTR1-203ENST00000403528 2003 ntAPPRIS P1 TSL 5 BASIC15.73■□□□□ 0.11
COL5A1P20908 PPOX-202ENST00000367999 1740 ntAPPRIS P1 TSL 1 (best) BASIC15.73■□□□□ 0.11
COL5A1P20908 CHRD-202ENST00000348986 3155 ntAPPRIS ALT2 TSL 5 BASIC15.73■□□□□ 0.11
COL5A1P20908 NRP1-204ENST00000374822 2213 ntTSL 1 (best) BASIC15.73■□□□□ 0.11
COL5A1P20908 SPAG11A-201ENST00000326558 612 ntTSL 1 (best) BASIC15.73■□□□□ 0.11
COL5A1P20908 CTRB1-201ENST00000361017 858 ntAPPRIS P1 TSL 1 (best) BASIC15.73■□□□□ 0.11
COL5A1P20908 SUMF2-205ENST00000413756 1171 ntAPPRIS ALT2 TSL 5 BASIC15.73■□□□□ 0.11
COL5A1P20908 RAB34-206ENST00000415040 1293 ntTSL 2 BASIC15.73■□□□□ 0.11
COL5A1P20908 HIST1H2BPS3-201ENST00000419683 341 ntBASIC15.73■□□□□ 0.11
COL5A1P20908 AL589987.1-201ENST00000453380 819 ntBASIC15.73■□□□□ 0.11
COL5A1P20908 C9orf41-AS1-201ENST00000455609 719 ntTSL 1 (best) BASIC15.73■□□□□ 0.11
COL5A1P20908 PTK7-212ENST00000476760 902 ntTSL 2 BASIC15.73■□□□□ 0.11
COL5A1P20908 CNOT8-210ENST00000519404 945 ntTSL 2 BASIC15.73■□□□□ 0.11
COL5A1P20908 CNOT8-214ENST00000520671 923 ntTSL 2 BASIC15.73■□□□□ 0.11
COL5A1P20908 CNOT8-218ENST00000521583 1151 ntTSL 1 (best) BASIC15.73■□□□□ 0.11
COL5A1P20908 IL32-211ENST00000525643 1272 ntAPPRIS P4 TSL 1 (best) BASIC15.73■□□□□ 0.11
COL5A1P20908 IL32-213ENST00000528163 950 ntAPPRIS P4 TSL 2 BASIC15.73■□□□□ 0.11
COL5A1P20908 IL32-231ENST00000551513 791 ntAPPRIS ALT2 TSL 3 BASIC15.73■□□□□ 0.11
COL5A1P20908 AC013451.1-201ENST00000554552 518 ntTSL 4 BASIC15.73■□□□□ 0.11
COL5A1P20908 AC087612.1-201ENST00000560238 658 ntTSL 5 BASIC15.73■□□□□ 0.11
COL5A1P20908 AC005253.2-201ENST00000593791 432 ntTSL 3 BASIC15.73■□□□□ 0.11
COL5A1P20908 NOP16-209ENST00000618911 1087 ntTSL 1 (best) BASIC15.73■□□□□ 0.11
COL5A1P20908 MIR6069-201ENST00000620069 79 ntBASIC15.73■□□□□ 0.11
COL5A1P20908 WBP2-201ENST00000254806 1944 ntAPPRIS P2 TSL 1 (best) BASIC15.73■□□□□ 0.11
COL5A1P20908 SMTNL2-201ENST00000338859 1919 ntTSL 1 (best) BASIC15.73■□□□□ 0.11
COL5A1P20908 BOD1L2-201ENST00000585477 3239 ntAPPRIS P1 BASIC15.73■□□□□ 0.11
COL5A1P20908 EHD2-202ENST00000538399 1766 ntTSL 2 BASIC15.73■□□□□ 0.11
COL5A1P20908 PAAF1-207ENST00000536003 1639 ntTSL 1 (best) BASIC15.73■□□□□ 0.11
COL5A1P20908 DMPK-201ENST00000291270 2787 ntAPPRIS P3 TSL 5 BASIC15.73■□□□□ 0.11
COL5A1P20908 ADGRB1-202ENST00000517894 6241 ntAPPRIS P1 TSL 5 BASIC15.73■□□□□ 0.11
COL5A1P20908 PCBP3-204ENST00000400309 1986 ntAPPRIS ALT2 TSL 5 BASIC15.73■□□□□ 0.11
COL5A1P20908 DIABLO-203ENST00000353548 1345 ntTSL 1 (best) BASIC15.73■□□□□ 0.11
COL5A1P20908 GPS1-228ENST00000624957 1825 ntAPPRIS ALT1 TSL 5 BASIC15.73■□□□□ 0.11
COL5A1P20908 STIM2-204ENST00000467087 5154 ntAPPRIS ALT2 TSL 1 (best) BASIC15.73■□□□□ 0.11
COL5A1P20908 ZSCAN25-201ENST00000262941 1652 ntTSL 1 (best) BASIC15.73■□□□□ 0.11
COL5A1P20908 COPS3-212ENST00000539941 1699 ntTSL 2 BASIC15.73■□□□□ 0.11
COL5A1P20908 AL589702.1-201ENST00000641229 1509 ntBASIC15.73■□□□□ 0.11
COL5A1P20908 MPL-202ENST00000413998 1887 ntAPPRIS ALT2 TSL 1 (best) BASIC15.73■□□□□ 0.11
COL5A1P20908 PIGX-202ENST00000392391 3057 ntAPPRIS ALT2 TSL 1 (best) BASIC15.73■□□□□ 0.11
COL5A1P20908 NCAPH2-202ENST00000395698 1388 ntTSL 1 (best) BASIC15.73■□□□□ 0.11
COL5A1P20908 TJP3-205ENST00000587686 2946 ntAPPRIS ALT2 TSL 1 (best) BASIC15.73■□□□□ 0.11
COL5A1P20908 RIC8B-203ENST00000392839 2440 ntAPPRIS P3 TSL 1 (best) BASIC15.73■□□□□ 0.11
COL5A1P20908 ACBD3-201ENST00000366812 3573 ntAPPRIS P1 TSL 1 (best) BASIC15.73■□□□□ 0.11
COL5A1P20908 PHF20L1-203ENST00000337920 2311 ntTSL 1 (best) BASIC15.73■□□□□ 0.11
COL5A1P20908 MCC-208ENST00000514701 2855 ntTSL 2 BASIC15.73■□□□□ 0.11
COL5A1P20908 GIT1-201ENST00000225394 3768 ntAPPRIS P3 TSL 1 (best) BASIC15.73■□□□□ 0.11
COL5A1P20908 CRTC2-202ENST00000368630 1635 ntTSL 2 BASIC15.73■□□□□ 0.11
COL5A1P20908 SNHG22-201ENST00000589499 1615 ntTSL 2 BASIC15.73■□□□□ 0.11
COL5A1P20908 POLR1D-207ENST00000621089 1606 ntTSL 1 (best) BASIC15.73■□□□□ 0.11
COL5A1P20908 MIOX-203ENST00000395733 1021 ntTSL 1 (best) BASIC15.73■□□□□ 0.11
COL5A1P20908 FAM221A-203ENST00000409653 761 ntTSL 5 BASIC15.73■□□□□ 0.11
COL5A1P20908 FAM221A-204ENST00000409994 1136 ntTSL 1 (best) BASIC15.73■□□□□ 0.11
COL5A1P20908 DNAJB6-209ENST00000443280 1159 ntTSL 2 BASIC15.73■□□□□ 0.11
COL5A1P20908 MYCLP2-201ENST00000449268 967 ntBASIC15.73■□□□□ 0.11
COL5A1P20908 RHOXF1P1-201ENST00000454625 772 ntTSL 3 BASIC15.73■□□□□ 0.11
COL5A1P20908 NME2-206ENST00000513177 692 ntAPPRIS P1 TSL 2 BASIC15.73■□□□□ 0.11
COL5A1P20908 AP002490.2-201ENST00000524791 560 ntBASIC15.73■□□□□ 0.11
COL5A1P20908 ORC6-206ENST00000568364 888 ntTSL 5 BASIC15.73■□□□□ 0.11
COL5A1P20908 AC111170.2-201ENST00000585369 768 ntTSL 3 BASIC15.73■□□□□ 0.11
COL5A1P20908 AC015936.2-201ENST00000593177 259 ntBASIC15.73■□□□□ 0.11
COL5A1P20908 AL391069.4-201ENST00000609583 481 ntBASIC15.73■□□□□ 0.11
COL5A1P20908 NDUFS7-218ENST00000618074 688 ntTSL 5 BASIC15.73■□□□□ 0.11
COL5A1P20908 MYC-202ENST00000377970 2351 ntAPPRIS ALT2 TSL 1 (best) BASIC15.73■□□□□ 0.11
COL5A1P20908 CCDC28A-201ENST00000332797 1496 ntTSL 1 (best) BASIC15.73■□□□□ 0.11
COL5A1P20908 LETM2-201ENST00000297720 1693 ntTSL 2 BASIC15.73■□□□□ 0.11
COL5A1P20908 APBB2-204ENST00000502841 1681 ntTSL 2 BASIC15.73■□□□□ 0.11
COL5A1P20908 RAD1-208ENST00000628399 1678 ntTSL 3 BASIC15.73■□□□□ 0.11
COL5A1P20908 C17orf62-201ENST00000306645 2093 ntAPPRIS P1 TSL 1 (best) BASIC15.72■□□□□ 0.11
COL5A1P20908 C17orf62-203ENST00000434650 2050 ntTSL 2 BASIC15.72■□□□□ 0.11
COL5A1P20908 DRG1-201ENST00000331457 1746 ntAPPRIS P1 TSL 1 (best) BASIC15.72■□□□□ 0.11
COL5A1P20908 NYX-201ENST00000342595 2713 ntAPPRIS P1 TSL 1 (best) BASIC15.72■□□□□ 0.11
Retrieved 100 of 98,524 protein–RNA pairs in 46.1 ms