Protein–RNA interactions for Protein: P12111

COL6A3, Collagen alpha-3(VI) chain, humanhuman

Predictions only

Length 3,177 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3P12111 AP001351.1-201ENST00000501397 1865 ntTSL 2 BASIC17.03■□□□□ 0.32
COL6A3P12111 ETV7-207ENST00000620358 1599 ntTSL 1 (best) BASIC17.02■□□□□ 0.32
COL6A3P12111 RANBP3-201ENST00000034275 1762 ntAPPRIS ALT2 TSL 1 (best) BASIC17.02■□□□□ 0.32
COL6A3P12111 WRAP73-202ENST00000378322 1998 ntTSL 1 (best) BASIC17.02■□□□□ 0.32
COL6A3P12111 CXXC5-201ENST00000302517 2658 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.32
COL6A3P12111 STIM2-211ENST00000639195 2265 ntAPPRIS ALT2 TSL 1 (best) BASIC17.02■□□□□ 0.32
COL6A3P12111 ZNF446-201ENST00000335841 1889 ntTSL 5 BASIC17.02■□□□□ 0.32
COL6A3P12111 AC068134.1-201ENST00000441266 481 ntTSL 3 BASIC17.02■□□□□ 0.32
COL6A3P12111 RN7SL8P-201ENST00000461771 266 ntBASIC17.02■□□□□ 0.32
COL6A3P12111 HYAL3-206ENST00000513170 636 ntTSL 1 (best) BASIC17.02■□□□□ 0.32
COL6A3P12111 GMFG-209ENST00000600322 622 ntTSL 5 BASIC17.02■□□□□ 0.32
COL6A3P12111 AC145423.3-201ENST00000615987 467 ntBASIC17.02■□□□□ 0.32
COL6A3P12111 NFS1-202ENST00000374085 2645 ntTSL 2 BASIC17.02■□□□□ 0.32
COL6A3P12111 INTS10-201ENST00000397977 2804 ntAPPRIS P1 TSL 2 BASIC17.02■□□□□ 0.32
COL6A3P12111 DMRT2-205ENST00000382255 2367 ntTSL 1 (best) BASIC17.02■□□□□ 0.32
COL6A3P12111 PITPNM2-AS1-201ENST00000506255 2191 ntTSL 2 BASIC17.02■□□□□ 0.32
COL6A3P12111 RAB7A-201ENST00000265062 2244 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.32
COL6A3P12111 PCBP4-210ENST00000471622 1784 ntTSL 5 BASIC17.02■□□□□ 0.32
COL6A3P12111 IL9-201ENST00000274520 591 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.31
COL6A3P12111 APOA1-202ENST00000359492 932 ntAPPRIS P1 TSL 2 BASIC17.02■□□□□ 0.31
COL6A3P12111 MIR769-201ENST00000390225 118 ntBASIC17.02■□□□□ 0.31
COL6A3P12111 NPPC-202ENST00000409852 1051 ntAPPRIS P1 TSL 3 BASIC17.02■□□□□ 0.31
COL6A3P12111 TGIF2-C20orf24-201ENST00000558530 918 ntAPPRIS P1 TSL 3 BASIC17.02■□□□□ 0.31
COL6A3P12111 AC061975.2-201ENST00000581722 295 ntBASIC17.02■□□□□ 0.31
COL6A3P12111 RAB11B-202ENST00000594216 894 ntTSL 2 BASIC17.02■□□□□ 0.31
COL6A3P12111 AC005785.1-202ENST00000597164 237 ntTSL 3 BASIC17.02■□□□□ 0.31
COL6A3P12111 LINC00969-257ENST00000625632 898 ntTSL 5 BASIC17.02■□□□□ 0.31
COL6A3P12111 PLCXD1-202ENST00000381663 1863 ntAPPRIS P2 TSL 5 BASIC17.02■□□□□ 0.31
COL6A3P12111 PCDHGB3-202ENST00000618934 2445 ntAPPRIS P1 BASIC17.02■□□□□ 0.31
COL6A3P12111 PPA2-201ENST00000341695 1684 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.31
COL6A3P12111 CORO1C-204ENST00000541050 2487 ntAPPRIS P1 TSL 2 BASIC17.02■□□□□ 0.31
COL6A3P12111 BATF-201ENST00000286639 980 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
COL6A3P12111 BEX5-201ENST00000333643 857 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
COL6A3P12111 BRF1-202ENST00000379932 884 ntTSL 5 BASIC17.01■□□□□ 0.31
COL6A3P12111 SEPT12-202ENST00000396693 1156 ntTSL 1 (best) BASIC17.01■□□□□ 0.31
COL6A3P12111 PIK3IP1-202ENST00000402249 999 ntTSL 1 (best) BASIC17.01■□□□□ 0.31
COL6A3P12111 PRKG1-AS1-201ENST00000420193 971 ntTSL 3 BASIC17.01■□□□□ 0.31
COL6A3P12111 AL139008.1-201ENST00000437894 228 ntBASIC17.01■□□□□ 0.31
COL6A3P12111 AC147067.1-201ENST00000466692 579 ntTSL 2 BASIC17.01■□□□□ 0.31
COL6A3P12111 EVX1-AS-202ENST00000519050 576 ntTSL 4 BASIC17.01■□□□□ 0.31
COL6A3P12111 NPM1P43-201ENST00000558669 786 ntBASIC17.01■□□□□ 0.31
COL6A3P12111 AL022344.2-201ENST00000568976 968 ntBASIC17.01■□□□□ 0.31
COL6A3P12111 MIR4492-201ENST00000581627 80 ntBASIC17.01■□□□□ 0.31
COL6A3P12111 AC004834.1-204ENST00000640670 1055 ntTSL 5 BASIC17.01■□□□□ 0.31
COL6A3P12111 HEXB-207ENST00000511181 2021 ntTSL 1 (best) BASIC17.01■□□□□ 0.31
COL6A3P12111 ACP2-206ENST00000529444 1719 ntTSL 2 BASIC17.01■□□□□ 0.31
COL6A3P12111 ATP6V1B1-202ENST00000412314 1805 ntTSL 5 BASIC17.01■□□□□ 0.31
COL6A3P12111 ACSM2B-208ENST00000565322 1834 ntTSL 2 BASIC17.01■□□□□ 0.31
COL6A3P12111 ARPC4-201ENST00000397261 2582 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
COL6A3P12111 ZFYVE28-210ENST00000515169 1590 ntTSL 1 (best) BASIC17.01■□□□□ 0.31
COL6A3P12111 KLHDC8B-201ENST00000332780 1959 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
COL6A3P12111 SARS2-212ENST00000600042 1630 ntTSL 2 BASIC17.01■□□□□ 0.31
COL6A3P12111 TCEAL1-203ENST00000372626 721 ntAPPRIS P1 TSL 2 BASIC17.01■□□□□ 0.31
COL6A3P12111 KRTAP19-9P-201ENST00000421795 191 ntBASIC17.01■□□□□ 0.31
COL6A3P12111 FGF13-204ENST00000436198 1165 ntTSL 2 BASIC17.01■□□□□ 0.31
COL6A3P12111 MSRB3-209ENST00000540804 884 ntTSL 2 BASIC17.01■□□□□ 0.31
COL6A3P12111 AC068397.2-201ENST00000558742 341 ntTSL 5 BASIC17.01■□□□□ 0.31
COL6A3P12111 AL390726.5-201ENST00000562942 871 ntTSL 2 BASIC17.01■□□□□ 0.31
COL6A3P12111 CYGB-203ENST00000589145 788 ntTSL 3 BASIC17.01■□□□□ 0.31
COL6A3P12111 FAM49B-224ENST00000522941 1700 ntTSL 5 BASIC17.01■□□□□ 0.31
COL6A3P12111 UBXN11-207ENST00000374223 1312 ntTSL 1 (best) BASIC17.01■□□□□ 0.31
COL6A3P12111 NDUFV1-202ENST00000415352 1512 ntAPPRIS ALT1 TSL 2 BASIC17.01■□□□□ 0.31
COL6A3P12111 IDH3G-204ENST00000427365 1526 ntTSL 5 BASIC17.01■□□□□ 0.31
COL6A3P12111 FBXO8-202ENST00000503293 1546 ntTSL 1 (best) BASIC17.01■□□□□ 0.31
COL6A3P12111 ZXDC-201ENST00000336332 2579 ntAPPRIS ALT2 TSL 1 (best) BASIC17.01■□□□□ 0.31
COL6A3P12111 ETNK2-202ENST00000367201 2431 ntAPPRIS ALT2 TSL 2 BASIC17.01■□□□□ 0.31
COL6A3P12111 ZNF211-204ENST00000347302 2472 ntAPPRIS ALT2 TSL 1 (best) BASIC17.01■□□□□ 0.31
COL6A3P12111 AC073316.1-202ENST00000402115 988 ntTSL 5 BASIC17.01■□□□□ 0.31
COL6A3P12111 YRDCP1-201ENST00000621419 643 ntBASIC17.01■□□□□ 0.31
COL6A3P12111 CEP78-202ENST00000376597 2618 ntAPPRIS P4 TSL 1 (best) BASIC17.01■□□□□ 0.31
COL6A3P12111 FBLN7-203ENST00000409450 1394 ntTSL 1 (best) BASIC17.01■□□□□ 0.31
COL6A3P12111 CYP2W1-201ENST00000308919 2304 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
COL6A3P12111 ADRA1A-206ENST00000380586 2304 ntTSL 1 (best) BASIC17.01■□□□□ 0.31
COL6A3P12111 SELENBP1-204ENST00000426705 1928 ntTSL 2 BASIC17■□□□□ 0.31
COL6A3P12111 CAV2-201ENST00000222693 3301 ntAPPRIS P1 TSL 1 (best) BASIC17■□□□□ 0.31
COL6A3P12111 ODF4-201ENST00000328248 1156 ntAPPRIS P3 TSL 1 (best) BASIC17■□□□□ 0.31
COL6A3P12111 AL161638.1-201ENST00000420354 481 ntTSL 3 BASIC17■□□□□ 0.31
COL6A3P12111 TCEAL4-208ENST00000472484 1273 ntAPPRIS P3 TSL 1 (best) BASIC17■□□□□ 0.31
COL6A3P12111 RAB26-202ENST00000541451 944 ntTSL 1 (best) BASIC17■□□□□ 0.31
COL6A3P12111 FTLP5-201ENST00000586853 534 ntBASIC17■□□□□ 0.31
COL6A3P12111 KLK3-207ENST00000595952 969 ntTSL 3 BASIC17■□□□□ 0.31
COL6A3P12111 SENP6-201ENST00000327284 2700 ntTSL 2 BASIC17■□□□□ 0.31
COL6A3P12111 HSFX2-201ENST00000598963 1365 ntAPPRIS P1 TSL 1 (best) BASIC17■□□□□ 0.31
COL6A3P12111 GGT2-202ENST00000405188 1845 ntTSL 5 BASIC17■□□□□ 0.31
COL6A3P12111 RGN-204ENST00000457380 2041 ntTSL 1 (best) BASIC17■□□□□ 0.31
COL6A3P12111 PLPBP-201ENST00000328195 2558 ntAPPRIS P1 TSL 1 (best) BASIC17■□□□□ 0.31
COL6A3P12111 SCYL1-202ENST00000279270 1659 ntTSL 5 BASIC17■□□□□ 0.31
COL6A3P12111 HSF2-201ENST00000368455 2549 ntAPPRIS P3 TSL 1 (best) BASIC17■□□□□ 0.31
COL6A3P12111 AL929472.3-201ENST00000433474 700 ntTSL 5 BASIC17■□□□□ 0.31
COL6A3P12111 PRSS30P-204ENST00000489864 650 ntTSL 1 (best) BASIC17■□□□□ 0.31
COL6A3P12111 CLRN2-201ENST00000511148 823 ntAPPRIS P1 TSL 1 (best) BASIC17■□□□□ 0.31
COL6A3P12111 AC044849.1-201ENST00000519737 1188 ntBASIC17■□□□□ 0.31
COL6A3P12111 CLNS1A-211ENST00000532069 898 ntTSL 3 BASIC17■□□□□ 0.31
COL6A3P12111 VASH1-AS1-201ENST00000554058 871 ntTSL 3 BASIC17■□□□□ 0.31
COL6A3P12111 FKBP10-201ENST00000321562 2662 ntAPPRIS P1 TSL 1 (best) BASIC17■□□□□ 0.31
COL6A3P12111 CYP2W1-202ENST00000340150 2361 ntTSL 2 BASIC17■□□□□ 0.31
COL6A3P12111 FBXO25-203ENST00000352684 2360 ntTSL 5 BASIC17■□□□□ 0.31
COL6A3P12111 ITGB2-AS1-202ENST00000441379 2282 ntTSL 1 (best) BASIC17■□□□□ 0.31
COL6A3P12111 SLC16A13-201ENST00000308027 1748 ntAPPRIS P1 TSL 1 (best) BASIC17■□□□□ 0.31
COL6A3P12111 PDXP-202ENST00000403251 1571 ntTSL 2 BASIC17■□□□□ 0.31
Retrieved 100 of 98,524 protein–RNA pairs in 52.7 ms