Protein–RNA interactions for Protein: P01375

TNF, Tumor necrosis factor, humanhuman

Predictions only

Length 233 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TNFP01375 LINC01089-211ENST00000543334 1282 ntTSL 4 BASIC16.22■□□□□ 0.19
TNFP01375 AC018653.3-201ENST00000544657 749 ntTSL 3 BASIC16.22■□□□□ 0.19
TNFP01375 AQP6-203ENST00000551733 849 ntTSL 3 BASIC16.22■□□□□ 0.19
TNFP01375 AC027088.1-201ENST00000557966 1117 ntTSL 2 BASIC16.22■□□□□ 0.19
TNFP01375 INO80C-206ENST00000586489 594 ntTSL 3 BASIC16.22■□□□□ 0.19
TNFP01375 AC003101.2-201ENST00000612557 442 ntBASIC16.22■□□□□ 0.19
TNFP01375 ZNF496-201ENST00000294753 5336 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
TNFP01375 FAM69C-201ENST00000343998 3671 ntAPPRIS P1 TSL 5 BASIC16.22■□□□□ 0.19
TNFP01375 TMEFF2-201ENST00000272771 2604 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
TNFP01375 LYPLAL1-202ENST00000366928 1898 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
TNFP01375 KIF16B-203ENST00000408042 4640 ntTSL 1 (best) BASIC16.22■□□□□ 0.19
TNFP01375 FO538757.1-201ENST00000623083 1397 ntBASIC16.22■□□□□ 0.19
TNFP01375 SLC12A2-208ENST00000628403 3617 ntAPPRIS ALT2 TSL 5 BASIC16.22■□□□□ 0.19
TNFP01375 GOLGA7-204ENST00000520817 1984 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
TNFP01375 FTCDNL1-204ENST00000622774 1997 ntTSL 1 (best) BASIC16.22■□□□□ 0.19
TNFP01375 GMPR2-217ENST00000559104 1719 ntTSL 5 BASIC16.22■□□□□ 0.19
TNFP01375 GGT6-203ENST00000573591 1730 ntTSL 4 BASIC16.22■□□□□ 0.19
TNFP01375 FAM46A-201ENST00000320172 5609 ntAPPRIS P2 TSL 1 (best) BASIC16.22■□□□□ 0.19
TNFP01375 TJP2-202ENST00000377245 4611 ntAPPRIS P4 TSL 1 (best) BASIC16.22■□□□□ 0.19
TNFP01375 SEPT8-205ENST00000378701 1817 ntTSL 2 BASIC16.22■□□□□ 0.19
TNFP01375 PDXP-202ENST00000403251 1571 ntTSL 2 BASIC16.21■□□□□ 0.19
TNFP01375 C5orf24-202ENST00000394976 5065 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.19
TNFP01375 COBL-201ENST00000265136 5291 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.19
TNFP01375 ZNF451-203ENST00000370706 5268 ntAPPRIS ALT2 TSL 1 (best) BASIC16.21■□□□□ 0.19
TNFP01375 C10orf107-201ENST00000330194 1685 ntAPPRIS P2 TSL 1 (best) BASIC16.21■□□□□ 0.19
TNFP01375 NR4A1-203ENST00000394824 2639 ntAPPRIS P1 TSL 5 BASIC16.21■□□□□ 0.19
TNFP01375 ZNF710-201ENST00000268154 4617 ntAPPRIS P1 TSL 2 BASIC16.21■□□□□ 0.19
TNFP01375 LINC00921-202ENST00000573951 2468 ntTSL 2 BASIC16.21■□□□□ 0.19
TNFP01375 TVP23C-201ENST00000225576 1527 ntTSL 1 (best) BASIC16.21■□□□□ 0.19
TNFP01375 NFYC-210ENST00000425457 1536 ntTSL 2 BASIC16.21■□□□□ 0.19
TNFP01375 PHGDH-202ENST00000369409 1882 ntTSL 1 (best) BASIC16.21■□□□□ 0.19
TNFP01375 ODF2-204ENST00000372814 2249 ntTSL 2 BASIC16.21■□□□□ 0.19
TNFP01375 DHX33-202ENST00000433302 2225 ntTSL 1 (best) BASIC16.21■□□□□ 0.19
TNFP01375 PPP3CA-203ENST00000394854 4685 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.19
TNFP01375 MB21D2-201ENST00000392452 3368 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.19
TNFP01375 MAPKAP1-205ENST00000373503 3045 ntTSL 1 (best) BASIC16.21■□□□□ 0.19
TNFP01375 C2orf54-203ENST00000402775 1958 ntAPPRIS ALT2 TSL 2 BASIC16.21■□□□□ 0.19
TNFP01375 RPL21-203ENST00000319826 806 ntAPPRIS P1 TSL 2 BASIC16.21■□□□□ 0.19
TNFP01375 HDAC8-202ENST00000373556 704 ntTSL 2 BASIC16.21■□□□□ 0.19
TNFP01375 HLA-H-201ENST00000383620 1096 ntBASIC16.21■□□□□ 0.19
TNFP01375 CENPM-205ENST00000404067 905 ntTSL 3 BASIC16.21■□□□□ 0.19
TNFP01375 INGX-202ENST00000489074 768 ntBASIC16.21■□□□□ 0.19
TNFP01375 INS-205ENST00000512523 297 ntTSL 1 (best) BASIC16.21■□□□□ 0.19
TNFP01375 AC064807.1-203ENST00000520357 575 ntTSL 5 BASIC16.21■□□□□ 0.19
TNFP01375 AP006333.1-201ENST00000543817 575 ntTSL 4 BASIC16.21■□□□□ 0.19
TNFP01375 AJ003147.2-201ENST00000576468 629 ntTSL 3 BASIC16.21■□□□□ 0.19
TNFP01375 AP000894.3-201ENST00000582554 351 ntTSL 5 BASIC16.21■□□□□ 0.19
TNFP01375 AC006116.8-201ENST00000587004 987 ntTSL 2 BASIC16.21■□□□□ 0.19
TNFP01375 TIMM13-202ENST00000591871 631 ntTSL 5 BASIC16.21■□□□□ 0.19
TNFP01375 AC020765.3-201ENST00000613051 740 ntBASIC16.21■□□□□ 0.19
TNFP01375 CHGA-201ENST00000216492 2063 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.19
TNFP01375 FAM129C-202ENST00000335393 2508 ntAPPRIS P3 TSL 1 (best) BASIC16.21■□□□□ 0.19
TNFP01375 BPIFB4-201ENST00000375483 2159 ntAPPRIS P1 TSL 5 BASIC16.21■□□□□ 0.19
TNFP01375 DKK3-201ENST00000326932 2636 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.19
TNFP01375 CLDN14-201ENST00000342108 1453 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.19
TNFP01375 TBC1D2B-201ENST00000300584 6067 ntAPPRIS ALT2 TSL 5 BASIC16.21■□□□□ 0.18
TNFP01375 C16orf58-202ENST00000430477 2471 ntAPPRIS P2 TSL 1 (best) BASIC16.21■□□□□ 0.18
TNFP01375 FAM184A-201ENST00000338891 4141 ntAPPRIS P4 TSL 1 (best) BASIC16.21■□□□□ 0.18
TNFP01375 KDM5C-202ENST00000375379 5245 ntAPPRIS ALT2 TSL 5 BASIC16.21■□□□□ 0.18
TNFP01375 MFSD14A-201ENST00000370152 2777 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.18
TNFP01375 DPF2-205ENST00000528416 2799 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.18
TNFP01375 RBM4-204ENST00000408993 1763 ntAPPRIS P1 TSL 5 BASIC16.21■□□□□ 0.18
TNFP01375 LAMC1-201ENST00000258341 7889 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.18
TNFP01375 BICD2-201ENST00000356884 6427 ntAPPRIS ALT2 TSL 1 (best) BASIC16.2■□□□□ 0.18
TNFP01375 KDM6B-202ENST00000448097 5422 ntAPPRIS ALT2 TSL 5 BASIC16.2■□□□□ 0.18
TNFP01375 C8orf76-201ENST00000276704 1341 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
TNFP01375 MCM9-201ENST00000316068 2442 ntTSL 1 (best) BASIC16.2■□□□□ 0.18
TNFP01375 ANTXRL-206ENST00000622632 1964 ntAPPRIS ALT2 TSL 5 BASIC16.2■□□□□ 0.18
TNFP01375 BCL2L12-202ENST00000246785 1431 ntAPPRIS P3 TSL 1 (best) BASIC16.2■□□□□ 0.18
TNFP01375 USP27X-AS1-201ENST00000437322 2175 ntTSL 1 (best) BASIC16.2■□□□□ 0.18
TNFP01375 SCN3B-202ENST00000392770 6061 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
TNFP01375 CDK2-204ENST00000553376 1725 ntTSL 5 BASIC16.2■□□□□ 0.18
TNFP01375 IL12RB2-202ENST00000371000 2454 ntTSL 2 BASIC16.2■□□□□ 0.18
TNFP01375 PAK4-201ENST00000321944 2555 ntTSL 1 (best) BASIC16.2■□□□□ 0.18
TNFP01375 PTGES3-201ENST00000262033 1920 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
TNFP01375 NDRG2-204ENST00000360463 2047 ntAPPRIS ALT1 TSL 1 (best) BASIC16.2■□□□□ 0.18
TNFP01375 CABP5-201ENST00000293255 1257 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
TNFP01375 PPP1R27-201ENST00000330261 782 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
TNFP01375 OSTC-201ENST00000361564 1077 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
TNFP01375 PPP6R2P1-201ENST00000450880 1275 ntBASIC16.2■□□□□ 0.18
TNFP01375 PRICKLE2-AS1-203ENST00000476308 623 ntTSL 2 BASIC16.2■□□□□ 0.18
TNFP01375 AC098859.1-201ENST00000502915 1238 ntBASIC16.2■□□□□ 0.18
TNFP01375 TSC22D3-213ENST00000506081 956 ntTSL 5 BASIC16.2■□□□□ 0.18
TNFP01375 SMIM15-AS1-201ENST00000506902 796 ntTSL 3 BASIC16.2■□□□□ 0.18
TNFP01375 AP002748.3-201ENST00000527092 828 ntTSL 3 BASIC16.2■□□□□ 0.18
TNFP01375 NDUFA4L2-202ENST00000554503 1177 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
TNFP01375 AL158211.3-201ENST00000607385 239 ntBASIC16.2■□□□□ 0.18
TNFP01375 CEP19-202ENST00000409690 2201 ntAPPRIS P2 TSL 1 (best) BASIC16.2■□□□□ 0.18
TNFP01375 BCAS3-204ENST00000585744 2203 ntAPPRIS ALT2 TSL 5 BASIC16.2■□□□□ 0.18
TNFP01375 FAHD2B-202ENST00000414820 1388 ntAPPRIS P1 TSL 5 BASIC16.2■□□□□ 0.18
TNFP01375 TRAPPC12-201ENST00000324266 2508 ntAPPRIS P2 TSL 1 (best) BASIC16.2■□□□□ 0.18
TNFP01375 TPM1-219ENST00000559397 1655 ntTSL 2 BASIC16.2■□□□□ 0.18
TNFP01375 C9orf66-201ENST00000382387 2918 ntAPPRIS P1 BASIC16.2■□□□□ 0.18
TNFP01375 ZNF74-201ENST00000357502 2788 ntTSL 1 (best) BASIC16.2■□□□□ 0.18
TNFP01375 IL27RA-201ENST00000263379 2962 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
TNFP01375 EIF3B-201ENST00000360876 3055 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
TNFP01375 EMILIN3-201ENST00000332312 3796 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
TNFP01375 OTOL1-201ENST00000327928 1434 ntAPPRIS P1 TSL 2 BASIC16.19■□□□□ 0.18
TNFP01375 LITAF-202ENST00000381810 1527 ntTSL 5 BASIC16.19■□□□□ 0.18
TNFP01375 LIPE-AS1-201ENST00000457234 1501 ntTSL 1 (best) BASIC16.19■□□□□ 0.18
Retrieved 100 of 98,524 protein–RNA pairs in 25 ms