Protein–RNA interactions for Protein: O95343

SIX3, Homeobox protein SIX3, humanhuman

Predicted RBP Predictions only

Length 332 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SIX3O95343 SFTPC-204ENST00000520605 519 ntTSL 3 BASIC16.32■□□□□ 0.2
SIX3O95343 SFTPC-210ENST00000524255 681 ntTSL 2 BASIC16.32■□□□□ 0.2
SIX3O95343 OR7E14P-202ENST00000530490 1290 ntBASIC16.32■□□□□ 0.2
SIX3O95343 MRPL49-206ENST00000531705 489 ntTSL 5 BASIC16.32■□□□□ 0.2
SIX3O95343 FGD4-212ENST00000534526 2977 ntTSL 5 BASIC16.32■□□□□ 0.2
SIX3O95343 CDK2-204ENST00000553376 1725 ntTSL 5 BASIC16.32■□□□□ 0.2
SIX3O95343 THTPA-203ENST00000554789 1595 ntTSL 2 BASIC16.32■□□□□ 0.2
SIX3O95343 AL121820.2-201ENST00000556301 279 ntTSL 2 BASIC16.32■□□□□ 0.2
SIX3O95343 AC091167.2-201ENST00000579581 588 ntBASIC16.32■□□□□ 0.2
SIX3O95343 AC010776.2-201ENST00000588946 1081 ntTSL 2 BASIC16.32■□□□□ 0.2
SIX3O95343 TNFAIP3-207ENST00000614035 1430 ntTSL 5 BASIC16.32■□□□□ 0.2
SIX3O95343 PANK2-209ENST00000621507 1763 ntTSL 1 (best) BASIC16.32■□□□□ 0.2
SIX3O95343 TST-204ENST00000622841 1105 ntAPPRIS P1 TSL 5 BASIC16.32■□□□□ 0.2
SIX3O95343 YY1-201ENST00000262238 6697 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
SIX3O95343 ZNF213-206ENST00000574902 3208 ntAPPRIS P1 TSL 5 BASIC16.32■□□□□ 0.2
SIX3O95343 DLG4-201ENST00000302955 3184 ntAPPRIS P3 TSL 5 BASIC16.32■□□□□ 0.2
SIX3O95343 RCAN3-210ENST00000618490 2386 ntTSL 1 (best) BASIC16.31■□□□□ 0.2
SIX3O95343 DLGAP1-220ENST00000581699 2258 ntTSL 2 BASIC16.31■□□□□ 0.2
SIX3O95343 FAM131B-206ENST00000443739 4382 ntAPPRIS ALT1 TSL 1 (best) BASIC16.31■□□□□ 0.2
SIX3O95343 RGS3-206ENST00000374136 2092 ntTSL 1 (best) BASIC16.31■□□□□ 0.2
SIX3O95343 CDK1-204ENST00000448257 1948 ntAPPRIS ALT1 TSL 1 (best) BASIC16.31■□□□□ 0.2
SIX3O95343 ACP5-212ENST00000592828 1699 ntAPPRIS P1 TSL 5 BASIC16.31■□□□□ 0.2
SIX3O95343 PCDHA13-202ENST00000409494 4884 ntTSL 1 (best) BASIC16.31■□□□□ 0.2
SIX3O95343 FADS3-207ENST00000527697 1640 ntTSL 5 BASIC16.31■□□□□ 0.2
SIX3O95343 BNC1-201ENST00000345382 4610 ntAPPRIS P3 TSL 1 (best) BASIC16.31■□□□□ 0.2
SIX3O95343 HLA-F-218ENST00000376861 1544 ntAPPRIS ALT2 BASIC16.31■□□□□ 0.2
SIX3O95343 PRKAG1-217ENST00000552212 1497 ntTSL 2 BASIC16.31■□□□□ 0.2
SIX3O95343 TEX264-215ENST00000611400 1488 ntAPPRIS P3 TSL 5 BASIC16.31■□□□□ 0.2
SIX3O95343 FAM104A-202ENST00000405159 2865 ntTSL 1 (best) BASIC16.31■□□□□ 0.2
SIX3O95343 CXorf40B-205ENST00000462691 1440 ntAPPRIS ALT1 TSL 3 BASIC16.31■□□□□ 0.2
SIX3O95343 AP001189.5-201ENST00000637683 1413 ntTSL 5 BASIC16.31■□□□□ 0.2
SIX3O95343 BTC-201ENST00000395743 2816 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
SIX3O95343 ARVCF-204ENST00000406522 2682 ntTSL 5 BASIC16.31■□□□□ 0.2
SIX3O95343 THOC5-202ENST00000397871 2560 ntAPPRIS P1 TSL 5 BASIC16.31■□□□□ 0.2
SIX3O95343 C1orf43-204ENST00000368518 1278 ntTSL 1 (best) BASIC16.31■□□□□ 0.2
SIX3O95343 MRPS18A-201ENST00000372116 785 ntTSL 2 BASIC16.31■□□□□ 0.2
SIX3O95343 RPUSD3-201ENST00000383820 1225 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
SIX3O95343 POMC-203ENST00000395826 959 ntAPPRIS P1 TSL 2 BASIC16.31■□□□□ 0.2
SIX3O95343 NPY-203ENST00000407573 705 ntAPPRIS P1 TSL 3 BASIC16.31■□□□□ 0.2
SIX3O95343 PLA2G16-203ENST00000415826 1099 ntAPPRIS P1 TSL 2 BASIC16.31■□□□□ 0.2
SIX3O95343 MYCNOS-201ENST00000419083 770 ntTSL 1 (best) BASIC16.31■□□□□ 0.2
SIX3O95343 BMF-207ENST00000559701 630 ntTSL 3 BASIC16.31■□□□□ 0.2
SIX3O95343 AC012615.3-201ENST00000592884 500 ntTSL 3 BASIC16.31■□□□□ 0.2
SIX3O95343 CYP2A7P1-201ENST00000595391 815 ntBASIC16.31■□□□□ 0.2
SIX3O95343 SIGLEC29P-201ENST00000599873 1114 ntBASIC16.31■□□□□ 0.2
SIX3O95343 AC018529.2-201ENST00000612024 828 ntTSL 4 BASIC16.31■□□□□ 0.2
SIX3O95343 SMN2-213ENST00000614240 804 ntAPPRIS ALT2 TSL 5 BASIC16.31■□□□□ 0.2
SIX3O95343 TP73-AS1-207ENST00000624167 988 ntBASIC16.31■□□□□ 0.2
SIX3O95343 PLA2G16-206ENST00000639271 957 ntTSL 5 BASIC16.31■□□□□ 0.2
SIX3O95343 GLS2-217ENST00000623608 2518 ntTSL 1 (best) BASIC16.31■□□□□ 0.2
SIX3O95343 GPC1-201ENST00000264039 3713 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
SIX3O95343 ATXN2-201ENST00000377617 4702 ntAPPRIS P3 TSL 1 (best) BASIC16.31■□□□□ 0.2
SIX3O95343 NIM1K-201ENST00000326035 2313 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
SIX3O95343 ZDHHC13-201ENST00000399351 2283 ntTSL 1 (best) BASIC16.31■□□□□ 0.2
SIX3O95343 MAP4K4-205ENST00000350878 7640 ntTSL 1 (best) BASIC16.31■□□□□ 0.2
SIX3O95343 TGIF1-201ENST00000330513 1980 ntTSL 1 (best) BASIC16.31■□□□□ 0.2
SIX3O95343 TNFRSF13C-201ENST00000291232 3944 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
SIX3O95343 AL162727.3-201ENST00000635661 2787 ntBASIC16.31■□□□□ 0.2
SIX3O95343 DENND1A-202ENST00000373620 3612 ntAPPRIS ALT2 TSL 1 (best) BASIC16.31■□□□□ 0.2
SIX3O95343 PCSK4-201ENST00000300954 2661 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
SIX3O95343 VIPR1-217ENST00000543411 2681 ntTSL 2 BASIC16.31■□□□□ 0.2
SIX3O95343 RWDD4-201ENST00000326397 2641 ntAPPRIS P2 TSL 2 BASIC16.31■□□□□ 0.2
SIX3O95343 SATB1-201ENST00000338745 7810 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
SIX3O95343 RUSC1-209ENST00000471876 1749 ntTSL 1 (best) BASIC16.31■□□□□ 0.2
SIX3O95343 FBXL5-201ENST00000341285 3385 ntAPPRIS P3 TSL 1 (best) BASIC16.3■□□□□ 0.2
SIX3O95343 NFIX-210ENST00000588228 1692 ntTSL 2 BASIC16.3■□□□□ 0.2
SIX3O95343 PPP1R3G-201ENST00000405617 4907 ntAPPRIS P1 BASIC16.3■□□□□ 0.2
SIX3O95343 NKIRAS1-202ENST00000412028 1605 ntAPPRIS ALT1 TSL 5 BASIC16.3■□□□□ 0.2
SIX3O95343 AC100830.1-201ENST00000560387 1609 ntTSL 2 BASIC16.3■□□□□ 0.2
SIX3O95343 C4orf50-202ENST00000531445 6860 ntAPPRIS P5 TSL 5 BASIC16.3■□□□□ 0.2
SIX3O95343 SHISA5-208ENST00000442747 2250 ntTSL 2 BASIC16.3■□□□□ 0.2
SIX3O95343 FLJ31104-201ENST00000500093 2289 ntTSL 1 (best) BASIC16.3■□□□□ 0.2
SIX3O95343 ADORA1-203ENST00000367235 2219 ntTSL 2 BASIC16.3■□□□□ 0.2
SIX3O95343 ZSCAN2-214ENST00000546148 2242 ntAPPRIS P2 TSL 2 BASIC16.3■□□□□ 0.2
SIX3O95343 KCNJ12-201ENST00000331718 2198 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
SIX3O95343 BRSK1-202ENST00000326848 2095 ntTSL 5 BASIC16.3■□□□□ 0.2
SIX3O95343 ABTB1-201ENST00000232744 1965 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
SIX3O95343 ELFN2-208ENST00000430883 1970 ntTSL 2 BASIC16.3■□□□□ 0.2
SIX3O95343 IGF2-204ENST00000381406 5179 ntAPPRIS ALT1 TSL 2 BASIC16.3■□□□□ 0.2
SIX3O95343 ZNHIT1-201ENST00000305105 1225 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
SIX3O95343 ABHD11-203ENST00000395147 812 ntTSL 3 BASIC16.3■□□□□ 0.2
SIX3O95343 BX276092.7-202ENST00000422194 696 ntTSL 3 BASIC16.3■□□□□ 0.2
SIX3O95343 UBE2E1-AS1-201ENST00000426702 778 ntTSL 3 BASIC16.3■□□□□ 0.2
SIX3O95343 RMDN1-202ENST00000430676 1106 ntTSL 2 BASIC16.3■□□□□ 0.2
SIX3O95343 DUSP5P1-201ENST00000441325 1139 ntBASIC16.3■□□□□ 0.2
SIX3O95343 KRT18P56-201ENST00000507275 550 ntBASIC16.3■□□□□ 0.2
SIX3O95343 RNPS1P1-201ENST00000507437 918 ntBASIC16.3■□□□□ 0.2
SIX3O95343 AC068389.2-201ENST00000529518 430 ntTSL 2 BASIC16.3■□□□□ 0.2
SIX3O95343 DUSP6-204ENST00000547291 1074 ntTSL 2 BASIC16.3■□□□□ 0.2
SIX3O95343 RNPS1-222ENST00000567147 830 ntTSL 3 BASIC16.3■□□□□ 0.2
SIX3O95343 AL512625.1-201ENST00000305709 2541 ntTSL 1 (best) BASIC16.3■□□□□ 0.2
SIX3O95343 COL4A1-204ENST00000543140 2547 ntTSL 1 (best) BASIC16.3■□□□□ 0.2
SIX3O95343 F3-202ENST00000370207 1879 ntTSL 1 (best) BASIC16.3■□□□□ 0.2
SIX3O95343 PUF60-201ENST00000313352 1804 ntAPPRIS ALT1 TSL 1 (best) BASIC16.3■□□□□ 0.2
SIX3O95343 ADAM6-201ENST00000606026 1843 ntTSL 2 BASIC16.3■□□□□ 0.2
SIX3O95343 KRT2-201ENST00000309680 2403 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
SIX3O95343 NPR3-203ENST00000415167 1753 ntAPPRIS P3 TSL 1 (best) BASIC16.3■□□□□ 0.2
SIX3O95343 VPS16-203ENST00000380469 2318 ntTSL 2 BASIC16.3■□□□□ 0.2
SIX3O95343 CLPTM1L-209ENST00000507807 1740 ntTSL 1 (best) BASIC16.3■□□□□ 0.2
SIX3O95343 PITPNA-201ENST00000313486 3912 ntAPPRIS P2 TSL 5 BASIC16.3■□□□□ 0.2
Retrieved 100 of 98,524 protein–RNA pairs in 54.5 ms