Protein–RNA interactions for Protein: O60260

PRKN, E3 ubiquitin-protein ligase parkin, humanhuman

Predicted RBP Predictions only

Length 465 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PRKNO60260 SEMA3B-213ENST00000618865 2925 ntAPPRIS P3 TSL 5 BASIC15.51■□□□□ 0.07
PRKNO60260 LYPD5-203ENST00000594013 1519 ntAPPRIS P3 TSL 2 BASIC15.51■□□□□ 0.07
PRKNO60260 PTP4A1-201ENST00000370651 5088 ntAPPRIS P1 TSL 1 (best) BASIC15.51■□□□□ 0.07
PRKNO60260 JKAMP-215ENST00000616435 2338 ntTSL 5 BASIC15.51■□□□□ 0.07
PRKNO60260 SENP1-204ENST00000549518 2260 ntAPPRIS P2 TSL 1 (best) BASIC15.51■□□□□ 0.07
PRKNO60260 TSHZ1-204ENST00000580243 3582 ntAPPRIS P1 TSL 2 BASIC15.51■□□□□ 0.07
PRKNO60260 ZNF79-204ENST00000617266 1969 ntTSL 3 BASIC15.51■□□□□ 0.07
PRKNO60260 GLUD1-201ENST00000277865 3039 ntAPPRIS P1 TSL 1 (best) BASIC15.51■□□□□ 0.07
PRKNO60260 AIDA-201ENST00000340020 3008 ntAPPRIS P1 TSL 1 (best) BASIC15.51■□□□□ 0.07
PRKNO60260 SCRIB-203ENST00000377533 5108 ntAPPRIS ALT2 TSL 1 (best) BASIC15.51■□□□□ 0.07
PRKNO60260 GBGT1-204ENST00000372043 1935 ntTSL 2 BASIC15.51■□□□□ 0.07
PRKNO60260 FBXO24-206ENST00000468962 1901 ntTSL 2 BASIC15.51■□□□□ 0.07
PRKNO60260 REEP2-211ENST00000613650 1944 ntTSL 5 BASIC15.51■□□□□ 0.07
PRKNO60260 GGT5-203ENST00000398292 2408 ntAPPRIS ALT2 TSL 1 (best) BASIC15.51■□□□□ 0.07
PRKNO60260 ZC3H12A-201ENST00000373087 2684 ntAPPRIS P1 TSL 1 (best) BASIC15.51■□□□□ 0.07
PRKNO60260 EPHA10-203ENST00000427468 3167 ntAPPRIS ALT2 TSL 5 BASIC15.5■□□□□ 0.07
PRKNO60260 IFT74-203ENST00000433700 2119 ntAPPRIS P1 TSL 5 BASIC15.5■□□□□ 0.07
PRKNO60260 AMT-206ENST00000458307 1860 ntTSL 2 BASIC15.5■□□□□ 0.07
PRKNO60260 LINC00895-201ENST00000629028 1637 ntBASIC15.5■□□□□ 0.07
PRKNO60260 BACE1-201ENST00000313005 6326 ntAPPRIS P1 TSL 1 (best) BASIC15.5■□□□□ 0.07
PRKNO60260 KCNQ2-213ENST00000626839 9213 ntAPPRIS ALT1 TSL 1 (best) BASIC15.5■□□□□ 0.07
PRKNO60260 FRMD4A-203ENST00000357447 6821 ntAPPRIS P2 TSL 1 (best) BASIC15.5■□□□□ 0.07
PRKNO60260 BHMT2-205ENST00000521567 1537 ntTSL 2 BASIC15.5■□□□□ 0.07
PRKNO60260 TCF3-212ENST00000588136 2658 ntAPPRIS ALT2 TSL 2 BASIC15.5■□□□□ 0.07
PRKNO60260 ARMC12-201ENST00000288065 1169 ntTSL 1 (best) BASIC15.5■□□□□ 0.07
PRKNO60260 IFNL1-201ENST00000333625 857 ntAPPRIS P1 TSL 1 (best) BASIC15.5■□□□□ 0.07
PRKNO60260 DGKZ-202ENST00000343674 3816 ntAPPRIS P3 TSL 2 BASIC15.5■□□□□ 0.07
PRKNO60260 GPX7-201ENST00000361314 1228 ntAPPRIS P1 TSL 1 (best) BASIC15.5■□□□□ 0.07
PRKNO60260 TCEAL3-203ENST00000372628 1221 ntAPPRIS P1 TSL 5 BASIC15.5■□□□□ 0.07
PRKNO60260 AL355306.1-201ENST00000415580 579 ntBASIC15.5■□□□□ 0.07
PRKNO60260 CDK2AP2P3-201ENST00000422476 372 ntBASIC15.5■□□□□ 0.07
PRKNO60260 AP006288.1-201ENST00000446065 395 ntBASIC15.5■□□□□ 0.07
PRKNO60260 PARD6G-203ENST00000470488 596 ntTSL 1 (best) BASIC15.5■□□□□ 0.07
PRKNO60260 FAM153C-206ENST00000507848 1071 ntAPPRIS ALT2 TSL 2 BASIC15.5■□□□□ 0.07
PRKNO60260 PXN-AS1-202ENST00000538804 508 ntTSL 4 BASIC15.5■□□□□ 0.07
PRKNO60260 LINC00668-203ENST00000579012 605 ntTSL 3 BASIC15.5■□□□□ 0.07
PRKNO60260 AP001160.2-201ENST00000596071 487 ntBASIC15.5■□□□□ 0.07
PRKNO60260 GPR42-202ENST00000597214 1182 ntAPPRIS P1 BASIC15.5■□□□□ 0.07
PRKNO60260 AC013467.2-201ENST00000605472 835 ntBASIC15.5■□□□□ 0.07
PRKNO60260 LINC01128-208ENST00000608189 824 ntTSL 5 BASIC15.5■□□□□ 0.07
PRKNO60260 AC243773.2-203ENST00000612281 640 ntTSL 3 BASIC15.5■□□□□ 0.07
PRKNO60260 C1QTNF1-202ENST00000339142 3100 ntAPPRIS P1 TSL 5 BASIC15.5■□□□□ 0.07
PRKNO60260 NFIX-209ENST00000587760 1487 ntTSL 1 (best) BASIC15.5■□□□□ 0.07
PRKNO60260 UIMC1-201ENST00000377227 2570 ntAPPRIS P1 TSL 1 (best) BASIC15.5■□□□□ 0.07
PRKNO60260 AC226118.1-201ENST00000515213 2146 ntTSL 2 BASIC15.5■□□□□ 0.07
PRKNO60260 BCAT2-209ENST00000599246 1449 ntTSL 1 (best) BASIC15.5■□□□□ 0.07
PRKNO60260 ELN-206ENST00000380553 2703 ntAPPRIS ALT2 TSL 2 BASIC15.5■□□□□ 0.07
PRKNO60260 UGCG-201ENST00000374279 4007 ntAPPRIS P1 TSL 1 (best) BASIC15.5■□□□□ 0.07
PRKNO60260 ELAVL2-208ENST00000544538 3789 ntAPPRIS P3 TSL 5 BASIC15.5■□□□□ 0.07
PRKNO60260 CFAP45-201ENST00000368099 1842 ntAPPRIS P2 TSL 1 (best) BASIC15.5■□□□□ 0.07
PRKNO60260 HOXB1-201ENST00000239174 2020 ntAPPRIS P1 TSL 1 (best) BASIC15.5■□□□□ 0.07
PRKNO60260 CD72-204ENST00000396757 2035 ntAPPRIS P2 TSL 5 BASIC15.5■□□□□ 0.07
PRKNO60260 SLC9A3P2-201ENST00000447821 2021 ntBASIC15.5■□□□□ 0.07
PRKNO60260 PIGT-207ENST00000543458 2037 ntTSL 2 BASIC15.5■□□□□ 0.07
PRKNO60260 SLC35F3-202ENST00000366618 2891 ntAPPRIS P3 TSL 2 BASIC15.5■□□□□ 0.07
PRKNO60260 PCDHA2-201ENST00000378132 2626 ntAPPRIS ALT2 BASIC15.49■□□□□ 0.07
PRKNO60260 NOX4-207ENST00000525196 1555 ntTSL 1 (best) BASIC15.49■□□□□ 0.07
PRKNO60260 AHSA2-202ENST00000394457 6574 ntTSL 1 (best) BASIC15.49■□□□□ 0.07
PRKNO60260 IQCE-210ENST00000438376 2170 ntAPPRIS ALT2 TSL 5 BASIC15.49■□□□□ 0.07
PRKNO60260 ADRB3-201ENST00000345060 2950 ntAPPRIS P1 TSL 1 (best) BASIC15.49■□□□□ 0.07
PRKNO60260 TRAPPC11-201ENST00000334690 4552 ntAPPRIS P1 TSL 1 (best) BASIC15.49■□□□□ 0.07
PRKNO60260 RBBP7-204ENST00000404022 1904 ntTSL 5 BASIC15.49■□□□□ 0.07
PRKNO60260 STXBP1-216ENST00000636962 2918 ntTSL 5 BASIC15.49■□□□□ 0.07
PRKNO60260 USP4-201ENST00000265560 3126 ntAPPRIS P1 TSL 1 (best) BASIC15.49■□□□□ 0.07
PRKNO60260 LIFR-202ENST00000453190 4253 ntAPPRIS P1 TSL 2 BASIC15.49■□□□□ 0.07
PRKNO60260 GLOD4-202ENST00000301329 2059 ntAPPRIS P1 TSL 1 (best) BASIC15.49■□□□□ 0.07
PRKNO60260 COPS3-212ENST00000539941 1699 ntTSL 2 BASIC15.49■□□□□ 0.07
PRKNO60260 WDR90-209ENST00000547944 1672 ntTSL 2 BASIC15.49■□□□□ 0.07
PRKNO60260 MRPL9-202ENST00000368830 1296 ntAPPRIS P3 TSL 1 (best) BASIC15.49■□□□□ 0.07
PRKNO60260 C9orf116-202ENST00000371789 1278 ntTSL 1 (best) BASIC15.49■□□□□ 0.07
PRKNO60260 CHMP3-203ENST00000409225 1099 ntTSL 2 BASIC15.49■□□□□ 0.07
PRKNO60260 DANCR-201ENST00000411630 904 ntTSL 1 (best) BASIC15.49■□□□□ 0.07
PRKNO60260 NKIRAS1-204ENST00000416026 795 ntAPPRIS P2 TSL 3 BASIC15.49■□□□□ 0.07
PRKNO60260 AC092474.2-201ENST00000424288 719 ntBASIC15.49■□□□□ 0.07
PRKNO60260 AL135791.1-201ENST00000429214 826 ntTSL 5 BASIC15.49■□□□□ 0.07
PRKNO60260 LINC00899-202ENST00000444890 493 ntTSL 3 BASIC15.49■□□□□ 0.07
PRKNO60260 AZIN1-AS1-212ENST00000520538 476 ntTSL 3 BASIC15.49■□□□□ 0.07
PRKNO60260 SMCO4-204ENST00000527149 472 ntAPPRIS P1 TSL 5 BASIC15.49■□□□□ 0.07
PRKNO60260 AHSA1-202ENST00000535854 1173 ntTSL 2 BASIC15.49■□□□□ 0.07
PRKNO60260 NR2C2AP-204ENST00000538165 891 ntTSL 2 BASIC15.49■□□□□ 0.07
PRKNO60260 FBXO18-203ENST00000397269 3640 ntTSL 5 BASIC15.49■□□□□ 0.07
PRKNO60260 TRPC6-202ENST00000348423 2448 ntTSL 1 (best) BASIC15.49■□□□□ 0.07
PRKNO60260 SLC45A1-202ENST00000471889 2784 ntTSL 5 BASIC15.49■□□□□ 0.07
PRKNO60260 PDXDC1-204ENST00000455313 2183 ntTSL 2 BASIC15.49■□□□□ 0.07
PRKNO60260 SHOX-201ENST00000334060 1951 ntTSL 5 BASIC15.49■□□□□ 0.07
PRKNO60260 PCBP3-204ENST00000400309 1986 ntAPPRIS ALT2 TSL 5 BASIC15.49■□□□□ 0.07
PRKNO60260 LENG8-202ENST00000376514 5146 ntAPPRIS ALT2 TSL 5 BASIC15.49■□□□□ 0.07
PRKNO60260 SLC29A1-208ENST00000393844 2326 ntAPPRIS P1 TSL 1 (best) BASIC15.49■□□□□ 0.07
PRKNO60260 MMP17-206ENST00000535291 2301 ntAPPRIS ALT2 TSL 1 (best) BASIC15.49■□□□□ 0.07
PRKNO60260 NR2C1-219ENST00000622476 1561 ntTSL 5 BASIC15.49■□□□□ 0.07
PRKNO60260 USHBP1-203ENST00000431146 2136 ntTSL 2 BASIC15.49■□□□□ 0.07
PRKNO60260 ANKMY1-202ENST00000361678 2499 ntTSL 1 (best) BASIC15.49■□□□□ 0.07
PRKNO60260 ICAM4-203ENST00000393717 1390 ntAPPRIS ALT2 TSL 2 BASIC15.49■□□□□ 0.07
PRKNO60260 SPTBN4-202ENST00000352632 8676 ntAPPRIS P2 TSL 5 BASIC15.49■□□□□ 0.07
PRKNO60260 LGMN-211ENST00000555699 1728 ntTSL 5 BASIC15.48■□□□□ 0.07
PRKNO60260 FLYWCH1-203ENST00000416288 4963 ntAPPRIS P3 TSL 1 (best) BASIC15.48■□□□□ 0.07
PRKNO60260 FGFR3-208ENST00000481110 4217 ntTSL 1 (best) BASIC15.48■□□□□ 0.07
PRKNO60260 SLC25A35-205ENST00000580340 1541 ntTSL 1 (best) BASIC15.48■□□□□ 0.07
PRKNO60260 SIRT6-203ENST00000594279 1507 ntTSL 3 BASIC15.48■□□□□ 0.07
PRKNO60260 IGLL5-203ENST00000532223 1335 ntAPPRIS ALT2 TSL 1 (best) BASIC15.48■□□□□ 0.07
Retrieved 100 of 98,524 protein–RNA pairs in 30 ms