Protein–RNA interactions for Protein: A8TX70

COL6A5, Collagen alpha-5(VI) chain, humanhuman

Predictions only

Length 2,615 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A5A8TX70 THTPA-203ENST00000554789 1595 ntTSL 2 BASIC12.7□□□□□ -0.38
COL6A5A8TX70 CAMKK2-207ENST00000404169 2116 ntAPPRIS P4 TSL 1 (best) BASIC12.7□□□□□ -0.38
COL6A5A8TX70 MSC-AS1-208ENST00000522519 1537 ntTSL 2 BASIC12.7□□□□□ -0.38
COL6A5A8TX70 EWSR1-202ENST00000332035 1989 ntAPPRIS ALT2 TSL 2 BASIC12.7□□□□□ -0.38
COL6A5A8TX70 SLC6A9-201ENST00000357730 2168 ntTSL 1 (best) BASIC12.7□□□□□ -0.38
COL6A5A8TX70 OGDH-204ENST00000443864 1744 ntTSL 1 (best) BASIC12.7□□□□□ -0.38
COL6A5A8TX70 TMEM40-201ENST00000264728 984 ntAPPRIS P3 TSL 2 BASIC12.7□□□□□ -0.38
COL6A5A8TX70 SYCN-201ENST00000318438 573 ntAPPRIS P1 TSL 1 (best) BASIC12.7□□□□□ -0.38
COL6A5A8TX70 IL27-201ENST00000356897 1044 ntAPPRIS P2 TSL 1 (best) BASIC12.7□□□□□ -0.38
COL6A5A8TX70 SF3B5-201ENST00000367569 693 ntAPPRIS P1 BASIC12.7□□□□□ -0.38
COL6A5A8TX70 AL583835.2-202ENST00000421363 1104 ntTSL 1 (best) BASIC12.7□□□□□ -0.38
COL6A5A8TX70 MTX1P1-201ENST00000440904 838 ntBASIC12.7□□□□□ -0.38
COL6A5A8TX70 TIMM8B-201ENST00000504148 819 ntAPPRIS P1 TSL 1 (best) BASIC12.7□□□□□ -0.38
COL6A5A8TX70 HBS1L-208ENST00000525067 582 ntTSL 3 BASIC12.7□□□□□ -0.38
COL6A5A8TX70 TGIF2-C20orf24-201ENST00000558530 918 ntAPPRIS P1 TSL 3 BASIC12.7□□□□□ -0.38
COL6A5A8TX70 NAT9-222ENST00000583476 583 ntTSL 3 BASIC12.7□□□□□ -0.38
COL6A5A8TX70 AC008403.1-201ENST00000595676 443 ntAPPRIS P1 TSL 2 BASIC12.7□□□□□ -0.38
COL6A5A8TX70 MRNIP-225ENST00000610475 810 ntTSL 5 BASIC12.7□□□□□ -0.38
COL6A5A8TX70 AL096828.3-201ENST00000615354 462 ntBASIC12.7□□□□□ -0.38
COL6A5A8TX70 AP001505.2-201ENST00000616815 443 ntBASIC12.7□□□□□ -0.38
COL6A5A8TX70 LINC01668-201ENST00000635001 513 ntTSL 4 BASIC12.7□□□□□ -0.38
COL6A5A8TX70 AC244452.3-201ENST00000636814 210 ntBASIC12.7□□□□□ -0.38
COL6A5A8TX70 NETO1-207ENST00000583169 2357 ntAPPRIS P1 TSL 1 (best) BASIC12.7□□□□□ -0.38
COL6A5A8TX70 PARP2-202ENST00000429687 1881 ntAPPRIS ALT2 TSL 1 (best) BASIC12.7□□□□□ -0.38
COL6A5A8TX70 LUC7L-202ENST00000337351 2097 ntTSL 1 (best) BASIC12.7□□□□□ -0.38
COL6A5A8TX70 SLC12A9-215ENST00000540482 2269 ntTSL 2 BASIC12.7□□□□□ -0.38
COL6A5A8TX70 ARFRP1-212ENST00000618838 1623 ntAPPRIS P1 TSL 5 BASIC12.7□□□□□ -0.38
COL6A5A8TX70 RBM17-201ENST00000379888 2755 ntAPPRIS P1 TSL 1 (best) BASIC12.7□□□□□ -0.38
COL6A5A8TX70 TRAM1-205ENST00000521425 3394 ntTSL 2 BASIC12.7□□□□□ -0.38
COL6A5A8TX70 C9orf24-203ENST00000379126 496 ntTSL 1 (best) BASIC12.7□□□□□ -0.38
COL6A5A8TX70 SOCS2P1-201ENST00000417727 557 ntBASIC12.7□□□□□ -0.38
COL6A5A8TX70 U82695.1-202ENST00000428676 700 ntTSL 2 BASIC12.7□□□□□ -0.38
COL6A5A8TX70 AC093151.3-202ENST00000445073 709 ntTSL 3 BASIC12.7□□□□□ -0.38
COL6A5A8TX70 METTL21A-209ENST00000448823 869 ntTSL 5 BASIC12.7□□□□□ -0.38
COL6A5A8TX70 IGHV4-4-201ENST00000455737 417 ntAPPRIS P1 BASIC12.7□□□□□ -0.38
COL6A5A8TX70 AC245884.6-201ENST00000515672 1067 ntBASIC12.7□□□□□ -0.38
COL6A5A8TX70 AC136475.2-201ENST00000526612 392 ntTSL 3 BASIC12.7□□□□□ -0.38
COL6A5A8TX70 AC005357.2-202ENST00000590507 1060 ntBASIC12.7□□□□□ -0.38
COL6A5A8TX70 AL139327.4-201ENST00000612362 153 ntBASIC12.7□□□□□ -0.38
COL6A5A8TX70 DLX2-201ENST00000234198 2453 ntAPPRIS P1 TSL 1 (best) BASIC12.7□□□□□ -0.38
COL6A5A8TX70 AC092143.3-201ENST00000565150 1900 ntTSL 5 BASIC12.69□□□□□ -0.38
COL6A5A8TX70 SLC16A13-201ENST00000308027 1748 ntAPPRIS P1 TSL 1 (best) BASIC12.69□□□□□ -0.38
COL6A5A8TX70 AD000671.3-202ENST00000591091 1712 ntTSL 1 (best) BASIC12.69□□□□□ -0.38
COL6A5A8TX70 FBXO8-202ENST00000503293 1546 ntTSL 1 (best) BASIC12.69□□□□□ -0.38
COL6A5A8TX70 PRKAR1B-204ENST00000406797 2553 ntAPPRIS P1 TSL 1 (best) BASIC12.69□□□□□ -0.38
COL6A5A8TX70 IDUA-201ENST00000247933 2163 ntAPPRIS P1 TSL 1 (best) BASIC12.69□□□□□ -0.38
COL6A5A8TX70 PIP4K2C-202ENST00000422156 1558 ntTSL 2 BASIC12.69□□□□□ -0.38
COL6A5A8TX70 NR4A2-210ENST00000429376 1571 ntTSL 5 BASIC12.69□□□□□ -0.38
COL6A5A8TX70 AL671710.1-201ENST00000610245 2349 ntBASIC12.69□□□□□ -0.38
COL6A5A8TX70 BEX5-201ENST00000333643 857 ntAPPRIS P1 TSL 1 (best) BASIC12.69□□□□□ -0.38
COL6A5A8TX70 AC079807.2-203ENST00000417692 656 ntTSL 2 BASIC12.69□□□□□ -0.38
COL6A5A8TX70 POM121L10P-201ENST00000436994 1285 ntBASIC12.69□□□□□ -0.38
COL6A5A8TX70 AL109811.2-201ENST00000447600 487 ntTSL 3 BASIC12.69□□□□□ -0.38
COL6A5A8TX70 APOA2-204ENST00000464492 530 ntTSL 3 BASIC12.69□□□□□ -0.38
COL6A5A8TX70 LINC01585-201ENST00000500496 1295 ntTSL 1 (best) BASIC12.69□□□□□ -0.38
COL6A5A8TX70 PSORS1C1-206ENST00000547221 655 ntAPPRIS ALT2 TSL 3 BASIC12.69□□□□□ -0.38
COL6A5A8TX70 C19orf70-206ENST00000590389 769 ntTSL 3 BASIC12.69□□□□□ -0.38
COL6A5A8TX70 AC005785.1-202ENST00000597164 237 ntTSL 3 BASIC12.69□□□□□ -0.38
COL6A5A8TX70 PELI3-202ENST00000349459 2783 ntAPPRIS P1 TSL 1 (best) BASIC12.69□□□□□ -0.38
COL6A5A8TX70 TGFBR1-201ENST00000374990 5720 ntTSL 1 (best) BASIC12.69□□□□□ -0.38
COL6A5A8TX70 C11orf95-202ENST00000433688 5716 ntAPPRIS P1 TSL 5 BASIC12.69□□□□□ -0.38
COL6A5A8TX70 SYTL3-201ENST00000297239 2292 ntAPPRIS ALT1 TSL 1 (best) BASIC12.69□□□□□ -0.38
COL6A5A8TX70 ISCA1-203ENST00000375991 1958 ntAPPRIS P1 TSL 1 (best) BASIC12.69□□□□□ -0.38
COL6A5A8TX70 SLC25A48-201ENST00000274513 1880 ntTSL 2 BASIC12.69□□□□□ -0.38
COL6A5A8TX70 METTL17-202ENST00000382985 1586 ntAPPRIS ALT2 TSL 1 (best) BASIC12.69□□□□□ -0.38
COL6A5A8TX70 TRAF2-201ENST00000247668 2264 ntAPPRIS P1 TSL 1 (best) BASIC12.69□□□□□ -0.38
COL6A5A8TX70 BCL2L13-206ENST00000399782 1381 ntAPPRIS ALT2 TSL 1 (best) BASIC12.69□□□□□ -0.38
COL6A5A8TX70 FBXO4-202ENST00000296812 1731 ntTSL 1 (best) BASIC12.69□□□□□ -0.38
COL6A5A8TX70 PRSS36-202ENST00000418068 2446 ntTSL 2 BASIC12.69□□□□□ -0.38
COL6A5A8TX70 ALDOA-221ENST00000566897 2448 ntAPPRIS P2 TSL 2 BASIC12.69□□□□□ -0.38
COL6A5A8TX70 KCNE3-201ENST00000310128 3143 ntAPPRIS P1 TSL 1 (best) BASIC12.69□□□□□ -0.38
COL6A5A8TX70 TCL1B-201ENST00000340722 1166 ntAPPRIS P1 TSL 1 (best) BASIC12.69□□□□□ -0.38
COL6A5A8TX70 GAD1-203ENST00000375272 1252 ntTSL 1 (best) BASIC12.69□□□□□ -0.38
COL6A5A8TX70 KRTAP1-4-201ENST00000377747 408 ntAPPRIS P1 BASIC12.69□□□□□ -0.38
COL6A5A8TX70 AC131097.2-203ENST00000401641 507 ntAPPRIS ALT2 TSL 2 BASIC12.69□□□□□ -0.38
COL6A5A8TX70 SERF2-206ENST00000409291 807 ntTSL 3 BASIC12.69□□□□□ -0.38
COL6A5A8TX70 AP000350.4-201ENST00000433835 788 ntAPPRIS P1 TSL 5 BASIC12.69□□□□□ -0.38
COL6A5A8TX70 SELENOT-203ENST00000477889 944 ntTSL 5 BASIC12.69□□□□□ -0.38
COL6A5A8TX70 CCDC153-204ENST00000503566 1295 ntAPPRIS P1 TSL 5 BASIC12.69□□□□□ -0.38
COL6A5A8TX70 CNOT8-210ENST00000519404 945 ntTSL 2 BASIC12.69□□□□□ -0.38
COL6A5A8TX70 CNOT8-218ENST00000521583 1151 ntTSL 1 (best) BASIC12.69□□□□□ -0.38
COL6A5A8TX70 SHBG-212ENST00000575314 1146 ntTSL 1 (best) BASIC12.69□□□□□ -0.38
COL6A5A8TX70 AL445288.1-201ENST00000610846 654 ntTSL 4 BASIC12.69□□□□□ -0.38
COL6A5A8TX70 AC018735.1-201ENST00000437208 1502 ntBASIC12.69□□□□□ -0.38
COL6A5A8TX70 AHSA1-201ENST00000216479 1402 ntAPPRIS P1 TSL 1 (best) BASIC12.69□□□□□ -0.38
COL6A5A8TX70 NOMO2-212ENST00000622306 4252 ntAPPRIS P3 TSL 1 (best) BASIC12.69□□□□□ -0.38
COL6A5A8TX70 MIOX-202ENST00000395732 1658 ntTSL 1 (best) BASIC12.69□□□□□ -0.38
COL6A5A8TX70 KCNQ2-215ENST00000629241 2853 ntTSL 5 BASIC12.69□□□□□ -0.38
COL6A5A8TX70 AC134312.5-201ENST00000568031 1313 ntBASIC12.68□□□□□ -0.38
COL6A5A8TX70 ACAP3-202ENST00000354700 3896 ntAPPRIS P1 TSL 1 (best) BASIC12.68□□□□□ -0.38
COL6A5A8TX70 USP25-202ENST00000285681 5216 ntTSL 1 (best) BASIC12.68□□□□□ -0.38
COL6A5A8TX70 CXCR3-201ENST00000373691 1861 ntTSL 1 (best) BASIC12.68□□□□□ -0.38
COL6A5A8TX70 GCDH-216ENST00000591470 1867 ntAPPRIS P1 TSL 1 (best) BASIC12.68□□□□□ -0.38
COL6A5A8TX70 RPS6KA1-204ENST00000374168 3186 ntAPPRIS P1 TSL 1 (best) BASIC12.68□□□□□ -0.38
COL6A5A8TX70 NDUFS8-201ENST00000313468 791 ntAPPRIS P1 TSL 1 (best) BASIC12.68□□□□□ -0.38
COL6A5A8TX70 AC012441.1-201ENST00000446669 685 ntBASIC12.68□□□□□ -0.38
COL6A5A8TX70 CYB561A3-219ENST00000544118 1136 ntTSL 5 BASIC12.68□□□□□ -0.38
COL6A5A8TX70 LRRC37A6P-204ENST00000575554 573 ntTSL 3 BASIC12.68□□□□□ -0.38
COL6A5A8TX70 AC011447.3-204ENST00000585498 883 ntTSL 2 BASIC12.68□□□□□ -0.38
COL6A5A8TX70 RPP40-207ENST00000618533 1056 ntTSL 5 BASIC12.68□□□□□ -0.38
Retrieved 100 of 98,524 protein–RNA pairs in 50.5 ms