Protein–RNA interactions for Protein: Q9Y5H4

PCDHGA1, Protocadherin gamma-A1, humanhuman

Predictions only

Length 931 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PCDHGA1Q9Y5H4 NDUFA2-201ENST00000252102 804 ntAPPRIS P1 TSL 1 (best) BASIC15.97■□□□□ 0.15
PCDHGA1Q9Y5H4 TEX12-201ENST00000280358 1147 ntAPPRIS P1 TSL 1 (best) BASIC15.97■□□□□ 0.15
PCDHGA1Q9Y5H4 PAGE5-201ENST00000289619 741 ntAPPRIS P3 TSL 1 (best) BASIC15.97■□□□□ 0.15
PCDHGA1Q9Y5H4 PPP1R27-201ENST00000330261 782 ntAPPRIS P1 TSL 1 (best) BASIC15.97■□□□□ 0.15
PCDHGA1Q9Y5H4 AL096814.1-202ENST00000372963 647 ntAPPRIS P5 TSL 2 BASIC15.97■□□□□ 0.15
PCDHGA1Q9Y5H4 IFT20-203ENST00000395418 825 ntAPPRIS P4 TSL 1 (best) BASIC15.97■□□□□ 0.15
PCDHGA1Q9Y5H4 RPL37AP1-201ENST00000412502 279 ntBASIC15.97■□□□□ 0.15
PCDHGA1Q9Y5H4 AP006294.1-201ENST00000415407 339 ntBASIC15.97■□□□□ 0.15
PCDHGA1Q9Y5H4 SAPCD1-209ENST00000425424 820 ntAPPRIS ALT2 TSL 5 BASIC15.97■□□□□ 0.15
PCDHGA1Q9Y5H4 CALML4-206ENST00000467889 987 ntAPPRIS P1 TSL 1 (best) BASIC15.97■□□□□ 0.15
PCDHGA1Q9Y5H4 AC011495.1-201ENST00000498085 584 ntBASIC15.97■□□□□ 0.15
PCDHGA1Q9Y5H4 ATP6V0B-211ENST00000498664 825 ntTSL 2 BASIC15.97■□□□□ 0.15
PCDHGA1Q9Y5H4 LINC00824-206ENST00000523173 920 ntTSL 2 BASIC15.97■□□□□ 0.15
PCDHGA1Q9Y5H4 CSF1R-209ENST00000543093 921 ntTSL 1 (best) BASIC15.97■□□□□ 0.15
PCDHGA1Q9Y5H4 IL32-234ENST00000552936 713 ntAPPRIS ALT2 TSL 3 BASIC15.97■□□□□ 0.15
PCDHGA1Q9Y5H4 LINC00473-203ENST00000581850 929 ntTSL 3 BASIC15.97■□□□□ 0.15
PCDHGA1Q9Y5H4 IFT20-216ENST00000588477 774 ntTSL 5 BASIC15.97■□□□□ 0.15
PCDHGA1Q9Y5H4 AC026803.2-201ENST00000599784 819 ntTSL 3 BASIC15.97■□□□□ 0.15
PCDHGA1Q9Y5H4 LGMN-201ENST00000334869 2055 ntAPPRIS P1 TSL 1 (best) BASIC15.97■□□□□ 0.15
PCDHGA1Q9Y5H4 AC127496.1-202ENST00000573602 2091 ntTSL 2 BASIC15.97■□□□□ 0.15
PCDHGA1Q9Y5H4 NR4A2-204ENST00000409572 2878 ntAPPRIS P1 TSL 5 BASIC15.97■□□□□ 0.15
PCDHGA1Q9Y5H4 NFYC-210ENST00000425457 1536 ntTSL 2 BASIC15.97■□□□□ 0.15
PCDHGA1Q9Y5H4 EIF3C-211ENST00000566866 2986 ntAPPRIS P1 TSL 1 (best) BASIC15.97■□□□□ 0.15
PCDHGA1Q9Y5H4 NRBP1-203ENST00000379852 2163 ntAPPRIS P1 TSL 1 (best) BASIC15.97■□□□□ 0.15
PCDHGA1Q9Y5H4 ZNF200-202ENST00000396870 2373 ntAPPRIS ALT2 TSL 1 (best) BASIC15.97■□□□□ 0.15
PCDHGA1Q9Y5H4 APP-202ENST00000348990 3355 ntTSL 1 (best) BASIC15.96■□□□□ 0.15
PCDHGA1Q9Y5H4 SORT1-201ENST00000256637 7028 ntAPPRIS P1 TSL 1 (best) BASIC15.96■□□□□ 0.15
PCDHGA1Q9Y5H4 NR4A2-210ENST00000429376 1571 ntTSL 5 BASIC15.96■□□□□ 0.15
PCDHGA1Q9Y5H4 RIMS4-201ENST00000372851 5203 ntAPPRIS P3 TSL 1 (best) BASIC15.96■□□□□ 0.15
PCDHGA1Q9Y5H4 MALT1-202ENST00000348428 9368 ntAPPRIS P4 TSL 1 (best) BASIC15.96■□□□□ 0.15
PCDHGA1Q9Y5H4 EPHA10-201ENST00000319637 2050 ntTSL 1 (best) BASIC15.96■□□□□ 0.15
PCDHGA1Q9Y5H4 HNF1A-202ENST00000400024 2337 ntTSL 2 BASIC15.96■□□□□ 0.15
PCDHGA1Q9Y5H4 ZNF346-208ENST00000511834 2306 ntTSL 5 BASIC15.96■□□□□ 0.15
PCDHGA1Q9Y5H4 CAPN5-205ENST00000529629 2333 ntAPPRIS P1 TSL 1 (best) BASIC15.96■□□□□ 0.15
PCDHGA1Q9Y5H4 PIP5K1C-205ENST00000589578 2933 ntAPPRIS ALT2 TSL 1 (best) BASIC15.96■□□□□ 0.15
PCDHGA1Q9Y5H4 PMAIP1-202ENST00000316660 1948 ntAPPRIS P1 TSL 1 (best) BASIC15.96■□□□□ 0.15
PCDHGA1Q9Y5H4 C14orf93-205ENST00000397379 1949 ntAPPRIS P1 TSL 1 (best) BASIC15.96■□□□□ 0.15
PCDHGA1Q9Y5H4 FGFR2-207ENST00000359354 1680 ntTSL 1 (best) BASIC15.96■□□□□ 0.15
PCDHGA1Q9Y5H4 ZNF397-201ENST00000261333 1419 ntTSL 1 (best) BASIC15.96■□□□□ 0.15
PCDHGA1Q9Y5H4 FPGS-201ENST00000373225 2278 ntTSL 2 BASIC15.96■□□□□ 0.15
PCDHGA1Q9Y5H4 DNAJA3-203ENST00000431375 2294 ntTSL 2 BASIC15.96■□□□□ 0.15
PCDHGA1Q9Y5H4 POC1A-203ENST00000474012 1760 ntAPPRIS ALT2 TSL 2 BASIC15.96■□□□□ 0.15
PCDHGA1Q9Y5H4 PNCK-202ENST00000370142 1525 ntTSL 5 BASIC15.96■□□□□ 0.15
PCDHGA1Q9Y5H4 RBM3-202ENST00000376755 1130 ntAPPRIS P1 TSL 2 BASIC15.96■□□□□ 0.15
PCDHGA1Q9Y5H4 MAGEC1-202ENST00000406005 1084 ntAPPRIS ALT2 TSL 1 (best) BASIC15.96■□□□□ 0.15
PCDHGA1Q9Y5H4 VAV2-203ENST00000406606 4691 ntAPPRIS P2 TSL 1 (best) BASIC15.96■□□□□ 0.15
PCDHGA1Q9Y5H4 MTND6P24-201ENST00000440466 518 ntBASIC15.96■□□□□ 0.15
PCDHGA1Q9Y5H4 AC098859.1-201ENST00000502915 1238 ntBASIC15.96■□□□□ 0.15
PCDHGA1Q9Y5H4 ZSCAN2-213ENST00000541040 965 ntTSL 1 (best) BASIC15.96■□□□□ 0.15
PCDHGA1Q9Y5H4 YEATS4-202ENST00000548020 1100 ntTSL 2 BASIC15.96■□□□□ 0.15
PCDHGA1Q9Y5H4 CHRNA5-203ENST00000559554 1051 ntTSL 3 BASIC15.96■□□□□ 0.15
PCDHGA1Q9Y5H4 AC106886.1-201ENST00000568660 600 ntBASIC15.96■□□□□ 0.15
PCDHGA1Q9Y5H4 TCP11-228ENST00000611141 2130 ntAPPRIS ALT2 TSL 1 (best) BASIC15.96■□□□□ 0.15
PCDHGA1Q9Y5H4 AL162274.1-201ENST00000617191 1098 ntBASIC15.96■□□□□ 0.15
PCDHGA1Q9Y5H4 AL136531.2-202ENST00000617804 573 ntAPPRIS P1 TSL 4 BASIC15.96■□□□□ 0.15
PCDHGA1Q9Y5H4 AC012313.1-201ENST00000593393 3059 ntBASIC15.96■□□□□ 0.15
PCDHGA1Q9Y5H4 ESR2-206ENST00000553796 1634 ntTSL 1 (best) BASIC15.96■□□□□ 0.15
PCDHGA1Q9Y5H4 GBGT1-203ENST00000372040 1980 ntAPPRIS P1 TSL 1 (best) BASIC15.96■□□□□ 0.15
PCDHGA1Q9Y5H4 BRPF1-203ENST00000424362 4712 ntAPPRIS ALT1 TSL 1 (best) BASIC15.96■□□□□ 0.15
PCDHGA1Q9Y5H4 GGT3P-201ENST00000412448 2340 ntTSL 2 BASIC15.96■□□□□ 0.15
PCDHGA1Q9Y5H4 FBF1-205ENST00000586717 4825 ntAPPRIS ALT2 TSL 5 BASIC15.96■□□□□ 0.15
PCDHGA1Q9Y5H4 CDKN1B-201ENST00000228872 2657 ntAPPRIS P1 TSL 1 (best) BASIC15.96■□□□□ 0.15
PCDHGA1Q9Y5H4 RNF34-201ENST00000361234 2066 ntAPPRIS ALT1 TSL 1 (best) BASIC15.96■□□□□ 0.15
PCDHGA1Q9Y5H4 FERMT2-204ENST00000399304 2082 ntTSL 1 (best) BASIC15.96■□□□□ 0.15
PCDHGA1Q9Y5H4 ANKRD20A5P-207ENST00000581935 2089 ntTSL 2 BASIC15.96■□□□□ 0.15
PCDHGA1Q9Y5H4 SENP5-201ENST00000323460 6308 ntAPPRIS P1 TSL 1 (best) BASIC15.96■□□□□ 0.15
PCDHGA1Q9Y5H4 C6orf106-202ENST00000374023 4418 ntAPPRIS P4 TSL 1 (best) BASIC15.96■□□□□ 0.14
PCDHGA1Q9Y5H4 ZNRF2-201ENST00000323037 3460 ntAPPRIS P1 TSL 1 (best) BASIC15.96■□□□□ 0.14
PCDHGA1Q9Y5H4 SHTN1-203ENST00000392901 2190 ntAPPRIS ALT2 TSL 2 BASIC15.96■□□□□ 0.14
PCDHGA1Q9Y5H4 FAM234A-203ENST00000399932 3213 ntAPPRIS P1 TSL 1 (best) BASIC15.96■□□□□ 0.14
PCDHGA1Q9Y5H4 TCF7-204ENST00000395029 3330 ntAPPRIS ALT2 TSL 5 BASIC15.96■□□□□ 0.14
PCDHGA1Q9Y5H4 FAM20A-205ENST00000592554 2955 ntAPPRIS P1 TSL 1 (best) BASIC15.96■□□□□ 0.14
PCDHGA1Q9Y5H4 NOL4L-211ENST00000621426 6577 ntAPPRIS P2 TSL 5 BASIC15.96■□□□□ 0.14
PCDHGA1Q9Y5H4 LHX8-201ENST00000294638 2373 ntAPPRIS P3 TSL 1 (best) BASIC15.95■□□□□ 0.14
PCDHGA1Q9Y5H4 MYH14-202ENST00000376970 6787 ntAPPRIS ALT2 TSL 5 BASIC15.95■□□□□ 0.14
PCDHGA1Q9Y5H4 HOXA5-201ENST00000222726 1657 ntAPPRIS P1 TSL 1 (best) BASIC15.95■□□□□ 0.14
PCDHGA1Q9Y5H4 TOM1-201ENST00000382034 1300 ntTSL 5 BASIC15.95■□□□□ 0.14
PCDHGA1Q9Y5H4 CCM2-207ENST00000475551 2471 ntAPPRIS ALT2 TSL 2 BASIC15.95■□□□□ 0.14
PCDHGA1Q9Y5H4 RUVBL1-202ENST00000464873 2126 ntTSL 2 BASIC15.95■□□□□ 0.14
PCDHGA1Q9Y5H4 IDUA-210ENST00000514224 2130 ntTSL 2 BASIC15.95■□□□□ 0.14
PCDHGA1Q9Y5H4 TULP2-201ENST00000221399 1754 ntAPPRIS P1 TSL 1 (best) BASIC15.95■□□□□ 0.14
PCDHGA1Q9Y5H4 BORCS6-201ENST00000389017 2575 ntAPPRIS P1 BASIC15.95■□□□□ 0.14
PCDHGA1Q9Y5H4 ARPC4-201ENST00000397261 2582 ntAPPRIS P1 TSL 1 (best) BASIC15.95■□□□□ 0.14
PCDHGA1Q9Y5H4 ZNF133-211ENST00000538547 2245 ntTSL 2 BASIC15.95■□□□□ 0.14
PCDHGA1Q9Y5H4 WNK2-201ENST00000297954 7138 ntAPPRIS P2 TSL 1 (best) BASIC15.95■□□□□ 0.14
PCDHGA1Q9Y5H4 TINF2-201ENST00000267415 1852 ntAPPRIS P4 TSL 1 (best) BASIC15.95■□□□□ 0.14
PCDHGA1Q9Y5H4 LINC01168-201ENST00000461291 5254 ntTSL 2 BASIC15.95■□□□□ 0.14
PCDHGA1Q9Y5H4 TDRKH-207ENST00000458431 2768 ntAPPRIS P2 TSL 1 (best) BASIC15.95■□□□□ 0.14
PCDHGA1Q9Y5H4 TDP2-202ENST00000378198 2071 ntAPPRIS P2 TSL 1 (best) BASIC15.95■□□□□ 0.14
PCDHGA1Q9Y5H4 SEMA6B-201ENST00000586582 3986 ntAPPRIS P2 TSL 1 (best) BASIC15.95■□□□□ 0.14
PCDHGA1Q9Y5H4 VKORC1L1-201ENST00000360768 5899 ntAPPRIS P1 TSL 1 (best) BASIC15.95■□□□□ 0.14
PCDHGA1Q9Y5H4 ULK3-201ENST00000440863 2623 ntAPPRIS P3 TSL 2 BASIC15.95■□□□□ 0.14
PCDHGA1Q9Y5H4 BEND5-201ENST00000371833 1716 ntAPPRIS P1 TSL 1 (best) BASIC15.95■□□□□ 0.14
PCDHGA1Q9Y5H4 MECP2-205ENST00000453960 1729 ntTSL 1 (best) BASIC15.95■□□□□ 0.14
PCDHGA1Q9Y5H4 CD276-201ENST00000318424 2738 ntTSL 5 BASIC15.95■□□□□ 0.14
PCDHGA1Q9Y5H4 RGL3-202ENST00000393423 2278 ntTSL 1 (best) BASIC15.95■□□□□ 0.14
PCDHGA1Q9Y5H4 ACTA1-201ENST00000366683 1122 ntTSL 5 BASIC15.95■□□□□ 0.14
PCDHGA1Q9Y5H4 NAA10-201ENST00000370009 837 ntTSL 1 (best) BASIC15.95■□□□□ 0.14
PCDHGA1Q9Y5H4 NAA10-203ENST00000370015 1002 ntTSL 5 BASIC15.95■□□□□ 0.14
PCDHGA1Q9Y5H4 CIB3-202ENST00000379859 467 ntTSL 1 (best) BASIC15.95■□□□□ 0.14
Retrieved 100 of 98,524 protein–RNA pairs in 53.4 ms