Protein–RNA interactions for Protein: Q96QK1

VPS35, Vacuolar protein sorting-associated protein 35, humanhuman

Predictions only

Length 796 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35Q96QK1 TEX264-216ENST00000614067 1174 ntAPPRIS ALT2 TSL 3 BASIC16.57■□□□□ 0.24
VPS35Q96QK1 AC023511.2-201ENST00000618803 211 ntBASIC16.57■□□□□ 0.24
VPS35Q96QK1 RARA-206ENST00000425707 3041 ntTSL 1 (best) BASIC16.57■□□□□ 0.24
VPS35Q96QK1 AP3D1-202ENST00000355272 5034 ntAPPRIS ALT2 TSL 1 (best) BASIC16.57■□□□□ 0.24
VPS35Q96QK1 PDE4A-201ENST00000293683 2583 ntAPPRIS ALT2 TSL 1 (best) BASIC16.57■□□□□ 0.24
VPS35Q96QK1 FAM184A-201ENST00000338891 4141 ntAPPRIS P4 TSL 1 (best) BASIC16.57■□□□□ 0.24
VPS35Q96QK1 NEO1-201ENST00000261908 7088 ntAPPRIS P3 TSL 1 (best) BASIC16.57■□□□□ 0.24
VPS35Q96QK1 PCDHA1-203ENST00000504120 5263 ntAPPRIS P1 TSL 1 (best) BASIC16.57■□□□□ 0.24
VPS35Q96QK1 PODNL1-202ENST00000339560 2165 ntAPPRIS P3 TSL 1 (best) BASIC16.57■□□□□ 0.24
VPS35Q96QK1 USP27X-AS1-201ENST00000437322 2175 ntTSL 1 (best) BASIC16.57■□□□□ 0.24
VPS35Q96QK1 AC004951.4-201ENST00000454572 2076 ntTSL 1 (best) BASIC16.57■□□□□ 0.24
VPS35Q96QK1 NUP62-211ENST00000597029 2053 ntAPPRIS P1 TSL 1 (best) BASIC16.57■□□□□ 0.24
VPS35Q96QK1 ORMDL1-203ENST00000392350 2009 ntAPPRIS P1 TSL 1 (best) BASIC16.57■□□□□ 0.24
VPS35Q96QK1 GXYLT2-201ENST00000389617 3260 ntAPPRIS P1 TSL 5 BASIC16.57■□□□□ 0.24
VPS35Q96QK1 CLDN14-204ENST00000399137 1942 ntAPPRIS P1 TSL 1 (best) BASIC16.57■□□□□ 0.24
VPS35Q96QK1 DUSP8-202ENST00000397374 4480 ntAPPRIS P1 TSL 1 (best) BASIC16.57■□□□□ 0.24
VPS35Q96QK1 AMT-206ENST00000458307 1860 ntTSL 2 BASIC16.56■□□□□ 0.24
VPS35Q96QK1 CLCN2-204ENST00000434054 2897 ntAPPRIS ALT2 TSL 2 BASIC16.56■□□□□ 0.24
VPS35Q96QK1 NDUFB2-AS1-201ENST00000465466 1648 ntTSL 2 BASIC16.56■□□□□ 0.24
VPS35Q96QK1 ATP6AP2-225ENST00000637482 1648 ntAPPRIS ALT2 TSL 5 BASIC16.56■□□□□ 0.24
VPS35Q96QK1 ALDH2-202ENST00000416293 1572 ntTSL 2 BASIC16.56■□□□□ 0.24
VPS35Q96QK1 COL8A2-202ENST00000397799 4670 ntAPPRIS P1 TSL 5 BASIC16.56■□□□□ 0.24
VPS35Q96QK1 SEPT4-201ENST00000317256 1530 ntAPPRIS ALT2 TSL 1 (best) BASIC16.56■□□□□ 0.24
VPS35Q96QK1 RPS5-202ENST00000596046 1520 ntAPPRIS P1 TSL 1 (best) BASIC16.56■□□□□ 0.24
VPS35Q96QK1 DNM2-201ENST00000355667 3541 ntTSL 1 (best) BASIC16.56■□□□□ 0.24
VPS35Q96QK1 SBNO2-202ENST00000438103 4537 ntAPPRIS ALT2 TSL 2 BASIC16.56■□□□□ 0.24
VPS35Q96QK1 FAM109A-204ENST00000548163 2317 ntAPPRIS P3 TSL 2 BASIC16.56■□□□□ 0.24
VPS35Q96QK1 BEND4-203ENST00000611697 1348 ntTSL 2 BASIC16.56■□□□□ 0.24
VPS35Q96QK1 FAM181B-201ENST00000329203 3924 ntAPPRIS P1 BASIC16.56■□□□□ 0.24
VPS35Q96QK1 MRGPRD-201ENST00000309106 966 ntAPPRIS P1 BASIC16.56■□□□□ 0.24
VPS35Q96QK1 FIGLA-201ENST00000332372 722 ntAPPRIS P1 TSL 1 (best) BASIC16.56■□□□□ 0.24
VPS35Q96QK1 NEK7-201ENST00000367383 586 ntTSL 2 BASIC16.56■□□□□ 0.24
VPS35Q96QK1 GPX1P2-201ENST00000429271 606 ntBASIC16.56■□□□□ 0.24
VPS35Q96QK1 EHMT1-216ENST00000493484 1182 ntTSL 3 BASIC16.56■□□□□ 0.24
VPS35Q96QK1 SNCA-209ENST00000506244 570 ntAPPRIS P1 TSL 2 BASIC16.56■□□□□ 0.24
VPS35Q96QK1 SLC25A3P1-206ENST00000569142 925 ntTSL 1 (best) BASIC16.56■□□□□ 0.24
VPS35Q96QK1 CD7-202ENST00000578509 925 ntTSL 3 BASIC16.56■□□□□ 0.24
VPS35Q96QK1 CROCCP3-203ENST00000589964 255 ntTSL 3 BASIC16.56■□□□□ 0.24
VPS35Q96QK1 AC021097.1-201ENST00000607902 574 ntBASIC16.56■□□□□ 0.24
VPS35Q96QK1 AC091812.2-201ENST00000619081 385 ntBASIC16.56■□□□□ 0.24
VPS35Q96QK1 CHGA-201ENST00000216492 2063 ntAPPRIS P1 TSL 1 (best) BASIC16.56■□□□□ 0.24
VPS35Q96QK1 WLS-202ENST00000354777 2037 ntTSL 1 (best) BASIC16.56■□□□□ 0.24
VPS35Q96QK1 LFNG-207ENST00000614382 1969 ntTSL 5 BASIC16.56■□□□□ 0.24
VPS35Q96QK1 LZTS3-202ENST00000337576 4238 ntAPPRIS P1 TSL 5 BASIC16.56■□□□□ 0.24
VPS35Q96QK1 CBSL-202ENST00000617706 2563 ntAPPRIS P1 TSL 1 (best) BASIC16.56■□□□□ 0.24
VPS35Q96QK1 DGKE-204ENST00000572810 1843 ntTSL 1 (best) BASIC16.56■□□□□ 0.24
VPS35Q96QK1 ITGAV-202ENST00000374907 6903 ntAPPRIS ALT2 TSL 1 (best) BASIC16.56■□□□□ 0.24
VPS35Q96QK1 YY1-201ENST00000262238 6697 ntAPPRIS P1 TSL 1 (best) BASIC16.56■□□□□ 0.24
VPS35Q96QK1 CYP2U1-202ENST00000508453 3125 ntTSL 1 (best) BASIC16.56■□□□□ 0.24
VPS35Q96QK1 CRYM-AS1-201ENST00000338573 1661 ntTSL 2 BASIC16.56■□□□□ 0.24
VPS35Q96QK1 RAD1-208ENST00000628399 1678 ntTSL 3 BASIC16.56■□□□□ 0.24
VPS35Q96QK1 AC006538.1-201ENST00000567905 1585 ntBASIC16.55■□□□□ 0.24
VPS35Q96QK1 AL603756.1-201ENST00000606511 2163 ntBASIC16.55■□□□□ 0.24
VPS35Q96QK1 APBA2-207ENST00000558402 4031 ntAPPRIS P1 TSL 5 BASIC16.55■□□□□ 0.24
VPS35Q96QK1 RASA4-202ENST00000449970 2787 ntAPPRIS ALT1 TSL 2 BASIC16.55■□□□□ 0.24
VPS35Q96QK1 LYPD5-203ENST00000594013 1519 ntAPPRIS P3 TSL 2 BASIC16.55■□□□□ 0.24
VPS35Q96QK1 SLCO5A1-206ENST00000530307 2630 ntTSL 1 (best) BASIC16.55■□□□□ 0.24
VPS35Q96QK1 ADAMTS4-201ENST00000367995 1961 ntTSL 1 (best) BASIC16.55■□□□□ 0.24
VPS35Q96QK1 C2orf54-203ENST00000402775 1958 ntAPPRIS ALT2 TSL 2 BASIC16.55■□□□□ 0.24
VPS35Q96QK1 JKAMP-202ENST00000356057 2524 ntTSL 1 (best) BASIC16.55■□□□□ 0.24
VPS35Q96QK1 BIRC7-201ENST00000217169 1368 ntAPPRIS P4 TSL 1 (best) BASIC16.55■□□□□ 0.24
VPS35Q96QK1 PPIC-201ENST00000306442 1380 ntAPPRIS P1 TSL 1 (best) BASIC16.55■□□□□ 0.24
VPS35Q96QK1 PTHLH-201ENST00000201015 1872 ntAPPRIS P3 TSL 3 BASIC16.55■□□□□ 0.24
VPS35Q96QK1 SNAPC4-201ENST00000298532 5010 ntAPPRIS P1 TSL 1 (best) BASIC16.55■□□□□ 0.24
VPS35Q96QK1 TMEM138-201ENST00000278826 1848 ntAPPRIS P1 TSL 1 (best) BASIC16.55■□□□□ 0.24
VPS35Q96QK1 ACSM2A-213ENST00000575690 2322 ntAPPRIS P1 TSL 2 BASIC16.55■□□□□ 0.24
VPS35Q96QK1 AL671710.1-201ENST00000610245 2349 ntBASIC16.55■□□□□ 0.24
VPS35Q96QK1 ANAPC11-201ENST00000344877 918 ntAPPRIS P1 TSL 1 (best) BASIC16.55■□□□□ 0.24
VPS35Q96QK1 MRPL9-202ENST00000368830 1296 ntAPPRIS P3 TSL 1 (best) BASIC16.55■□□□□ 0.24
VPS35Q96QK1 HIST1H2BD-202ENST00000377777 496 ntAPPRIS P1 BASIC16.55■□□□□ 0.24
VPS35Q96QK1 EXOSC8-202ENST00000389704 1198 ntAPPRIS P1 TSL 1 (best) BASIC16.55■□□□□ 0.24
VPS35Q96QK1 RPSAP43-201ENST00000402237 625 ntBASIC16.55■□□□□ 0.24
VPS35Q96QK1 UPF3AP3-201ENST00000420996 769 ntBASIC16.55■□□□□ 0.24
VPS35Q96QK1 AC092474.2-201ENST00000424288 719 ntBASIC16.55■□□□□ 0.24
VPS35Q96QK1 ACTG1P14-201ENST00000446382 1122 ntBASIC16.55■□□□□ 0.24
VPS35Q96QK1 AKR1A1-204ENST00000471651 1018 ntTSL 1 (best) BASIC16.55■□□□□ 0.24
VPS35Q96QK1 CCND3-213ENST00000510503 1257 ntTSL 3 BASIC16.55■□□□□ 0.24
VPS35Q96QK1 HELT-204ENST00000515777 841 ntAPPRIS P4 TSL 1 (best) BASIC16.55■□□□□ 0.24
VPS35Q96QK1 C8orf46-213ENST00000521495 557 ntTSL 4 BASIC16.55■□□□□ 0.24
VPS35Q96QK1 MVB12A-211ENST00000529939 1091 ntTSL 3 BASIC16.55■□□□□ 0.24
VPS35Q96QK1 AC092865.5-201ENST00000545435 363 ntBASIC16.55■□□□□ 0.24
VPS35Q96QK1 ANAPC11-213ENST00000577747 672 ntAPPRIS P1 TSL 5 BASIC16.55■□□□□ 0.24
VPS35Q96QK1 HNRNPDL-206ENST00000602300 1291 ntAPPRIS ALT2 TSL 1 (best) BASIC16.55■□□□□ 0.24
VPS35Q96QK1 TTBK2-208ENST00000622375 6891 ntAPPRIS ALT2 TSL 1 (best) BASIC16.55■□□□□ 0.24
VPS35Q96QK1 ITGB7-202ENST00000422257 2791 ntAPPRIS P1 TSL 5 BASIC16.55■□□□□ 0.24
VPS35Q96QK1 C2CD3-213ENST00000539061 2722 ntTSL 2 BASIC16.55■□□□□ 0.24
VPS35Q96QK1 ELN-207ENST00000380562 2240 ntAPPRIS ALT2 TSL 1 (best) BASIC16.55■□□□□ 0.24
VPS35Q96QK1 CHAD-201ENST00000258969 1739 ntAPPRIS P1 TSL 1 (best) BASIC16.55■□□□□ 0.24
VPS35Q96QK1 LPAR5-202ENST00000431922 2695 ntAPPRIS P1 TSL 2 BASIC16.55■□□□□ 0.24
VPS35Q96QK1 NBL1-210ENST00000615215 2160 ntAPPRIS ALT2 TSL 1 (best) BASIC16.55■□□□□ 0.24
VPS35Q96QK1 ARID5A-203ENST00000454558 3079 ntTSL 1 (best) BASIC16.55■□□□□ 0.24
VPS35Q96QK1 NF2-208ENST00000403435 2568 ntTSL 5 BASIC16.55■□□□□ 0.24
VPS35Q96QK1 BHMT2-205ENST00000521567 1537 ntTSL 2 BASIC16.55■□□□□ 0.24
VPS35Q96QK1 MAN2A2-216ENST00000559717 6704 ntAPPRIS P1 TSL 2 BASIC16.55■□□□□ 0.24
VPS35Q96QK1 RBCK1-202ENST00000356286 2774 ntAPPRIS P1 TSL 1 (best) BASIC16.55■□□□□ 0.24
VPS35Q96QK1 AGBL5-202ENST00000360131 3177 ntAPPRIS P3 TSL 1 (best) BASIC16.54■□□□□ 0.24
VPS35Q96QK1 LINC02167-203ENST00000566900 1489 ntTSL 2 BASIC16.54■□□□□ 0.24
VPS35Q96QK1 EIF4H-201ENST00000265753 2679 ntAPPRIS P4 TSL 2 BASIC16.54■□□□□ 0.24
VPS35Q96QK1 OCIAD1-213ENST00000508293 1423 ntAPPRIS P1 TSL 5 BASIC16.54■□□□□ 0.24
VPS35Q96QK1 AC087289.2-201ENST00000587267 1419 ntTSL 1 (best) BASIC16.54■□□□□ 0.24
Retrieved 100 of 98,524 protein–RNA pairs in 28.5 ms