Protein–RNA interactions for Protein: Q96AY4

TTC28, Tetratricopeptide repeat protein 28, humanhuman

Predictions only

Length 2,481 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TTC28Q96AY4 COMMD4-201ENST00000267935 1067 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
TTC28Q96AY4 COMMD4-202ENST00000338995 722 ntTSL 2 BASIC16.61■□□□□ 0.25
TTC28Q96AY4 GUK1-206ENST00000366723 845 ntTSL 5 BASIC16.61■□□□□ 0.25
TTC28Q96AY4 TCEAL1-203ENST00000372626 721 ntAPPRIS P1 TSL 2 BASIC16.61■□□□□ 0.25
TTC28Q96AY4 BRF1-202ENST00000379932 884 ntTSL 5 BASIC16.61■□□□□ 0.25
TTC28Q96AY4 RPSAP31-201ENST00000416648 895 ntBASIC16.61■□□□□ 0.25
TTC28Q96AY4 AL929472.3-201ENST00000433474 700 ntTSL 5 BASIC16.61■□□□□ 0.25
TTC28Q96AY4 LINC01762-204ENST00000434879 436 ntTSL 2 BASIC16.61■□□□□ 0.25
TTC28Q96AY4 AGTRAP-212ENST00000510878 849 ntTSL 3 BASIC16.61■□□□□ 0.25
TTC28Q96AY4 PNOC-204ENST00000522209 1007 ntTSL 2 BASIC16.61■□□□□ 0.25
TTC28Q96AY4 TGIF2-C20orf24-201ENST00000558530 918 ntAPPRIS P1 TSL 3 BASIC16.61■□□□□ 0.25
TTC28Q96AY4 AC068397.2-201ENST00000558742 341 ntTSL 5 BASIC16.61■□□□□ 0.25
TTC28Q96AY4 COMMD4-211ENST00000564815 639 ntTSL 3 BASIC16.61■□□□□ 0.25
TTC28Q96AY4 AC009486.1-201ENST00000569860 813 ntBASIC16.61■□□□□ 0.25
TTC28Q96AY4 WDR7-208ENST00000589935 544 ntTSL 4 BASIC16.61■□□□□ 0.25
TTC28Q96AY4 AC073352.2-201ENST00000609385 439 ntBASIC16.61■□□□□ 0.25
TTC28Q96AY4 ACD-202ENST00000393919 1974 ntAPPRIS ALT2 TSL 1 (best) BASIC16.61■□□□□ 0.25
TTC28Q96AY4 CHIA-206ENST00000430615 1320 ntTSL 1 (best) BASIC16.61■□□□□ 0.25
TTC28Q96AY4 CERKL-205ENST00000409440 2425 ntTSL 2 BASIC16.61■□□□□ 0.25
TTC28Q96AY4 ZNF385B-204ENST00000410066 3288 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
TTC28Q96AY4 MAEA-201ENST00000264750 2058 ntTSL 2 BASIC16.61■□□□□ 0.25
TTC28Q96AY4 NDUFS2-202ENST00000392179 2064 ntAPPRIS ALT1 TSL 1 (best) BASIC16.61■□□□□ 0.25
TTC28Q96AY4 CHST8-203ENST00000438847 2133 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
TTC28Q96AY4 SLC6A11-202ENST00000454147 2794 ntTSL 1 (best) BASIC16.6■□□□□ 0.25
TTC28Q96AY4 CALM3-201ENST00000291295 2289 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
TTC28Q96AY4 MUTYH-202ENST00000355498 1776 ntAPPRIS ALT2 TSL 1 (best) BASIC16.6■□□□□ 0.25
TTC28Q96AY4 COX4I1-201ENST00000253452 708 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
TTC28Q96AY4 NAT8-201ENST00000272425 947 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
TTC28Q96AY4 PSMB5-202ENST00000361611 1294 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
TTC28Q96AY4 NGDN-202ENST00000408901 1143 ntAPPRIS ALT2 TSL 1 (best) BASIC16.6■□□□□ 0.25
TTC28Q96AY4 LINC01006-204ENST00000435354 545 ntTSL 2 BASIC16.6■□□□□ 0.25
TTC28Q96AY4 TCEAL4-208ENST00000472484 1273 ntAPPRIS P3 TSL 1 (best) BASIC16.6■□□□□ 0.25
TTC28Q96AY4 AC106760.1-201ENST00000508690 800 ntBASIC16.6■□□□□ 0.25
TTC28Q96AY4 ANAPC11-215ENST00000578550 599 ntAPPRIS P1 TSL 2 BASIC16.6■□□□□ 0.25
TTC28Q96AY4 NAT9-212ENST00000581136 1011 ntAPPRIS P1 TSL 2 BASIC16.6■□□□□ 0.25
TTC28Q96AY4 AL031665.1-201ENST00000619766 572 ntTSL 4 BASIC16.6■□□□□ 0.25
TTC28Q96AY4 ARMC6-201ENST00000269932 2412 ntAPPRIS P1 TSL 5 BASIC16.6■□□□□ 0.25
TTC28Q96AY4 OSTM1-201ENST00000193322 4467 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
TTC28Q96AY4 PRDM14-201ENST00000276594 2344 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
TTC28Q96AY4 DYNC1LI2-201ENST00000258198 4515 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
TTC28Q96AY4 PGR-201ENST00000263463 2496 ntTSL 1 (best) BASIC16.6■□□□□ 0.25
TTC28Q96AY4 AC073592.3-201ENST00000625118 1834 ntBASIC16.6■□□□□ 0.25
TTC28Q96AY4 MOGS-201ENST00000233616 2895 ntAPPRIS P3 TSL 1 (best) BASIC16.6■□□□□ 0.25
TTC28Q96AY4 RGN-203ENST00000397180 2257 ntAPPRIS P1 TSL 5 BASIC16.6■□□□□ 0.25
TTC28Q96AY4 COQ9-210ENST00000567072 1482 ntTSL 3 BASIC16.6■□□□□ 0.25
TTC28Q96AY4 CLDND1-204ENST00000394185 2159 ntAPPRIS P1 TSL 5 BASIC16.6■□□□□ 0.25
TTC28Q96AY4 ZNF302-214ENST00000613363 2893 ntAPPRIS ALT2 TSL 4 BASIC16.6■□□□□ 0.25
TTC28Q96AY4 GGT2-202ENST00000405188 1845 ntTSL 5 BASIC16.6■□□□□ 0.25
TTC28Q96AY4 SPAG7-201ENST00000206020 1058 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
TTC28Q96AY4 YIPF7-201ENST00000332990 937 ntTSL 5 BASIC16.6■□□□□ 0.25
TTC28Q96AY4 AZGP1P1-201ENST00000411909 902 ntBASIC16.6■□□□□ 0.25
TTC28Q96AY4 AGTRAP-206ENST00000452018 809 ntTSL 2 BASIC16.6■□□□□ 0.25
TTC28Q96AY4 MTX3-202ENST00000512528 1280 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
TTC28Q96AY4 C11orf98-202ENST00000525675 405 ntTSL 2 BASIC16.6■□□□□ 0.25
TTC28Q96AY4 NPM1P43-201ENST00000558669 786 ntBASIC16.6■□□□□ 0.25
TTC28Q96AY4 AL359711.2-201ENST00000563105 872 ntBASIC16.6■□□□□ 0.25
TTC28Q96AY4 CYBA-208ENST00000567174 1085 ntTSL 2 BASIC16.6■□□□□ 0.25
TTC28Q96AY4 MIR4741-201ENST00000579822 90 ntBASIC16.6■□□□□ 0.25
TTC28Q96AY4 ZNF180-204ENST00000586637 1023 ntTSL 5 BASIC16.6■□□□□ 0.25
TTC28Q96AY4 AC136475.1-202ENST00000602429 1151 ntTSL 1 (best) BASIC16.6■□□□□ 0.25
TTC28Q96AY4 AP003392.6-201ENST00000607709 325 ntBASIC16.6■□□□□ 0.25
TTC28Q96AY4 NR2F2-AS1-215ENST00000620029 1223 ntTSL 5 BASIC16.6■□□□□ 0.25
TTC28Q96AY4 THTPA-203ENST00000554789 1595 ntTSL 2 BASIC16.6■□□□□ 0.25
TTC28Q96AY4 AL138828.1-202ENST00000576956 1881 ntTSL 5 BASIC16.6■□□□□ 0.25
TTC28Q96AY4 RANBP3-201ENST00000034275 1762 ntAPPRIS ALT2 TSL 1 (best) BASIC16.6■□□□□ 0.25
TTC28Q96AY4 ARFGAP3-201ENST00000263245 2857 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
TTC28Q96AY4 PFN2-201ENST00000239940 2261 ntAPPRIS P3 TSL 1 (best) BASIC16.6■□□□□ 0.25
TTC28Q96AY4 SPRED2-206ENST00000443619 1800 ntAPPRIS P1 TSL 2 BASIC16.6■□□□□ 0.25
TTC28Q96AY4 WWOX-214ENST00000566780 2482 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
TTC28Q96AY4 PTPDC1-202ENST00000375360 4517 ntAPPRIS ALT2 TSL 1 (best) BASIC16.59■□□□□ 0.25
TTC28Q96AY4 NR4A2-210ENST00000429376 1571 ntTSL 5 BASIC16.59■□□□□ 0.25
TTC28Q96AY4 PSMB4-201ENST00000290541 964 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
TTC28Q96AY4 CD1E-202ENST00000368155 696 ntTSL 1 (best) BASIC16.59■□□□□ 0.25
TTC28Q96AY4 CD1E-204ENST00000368157 399 ntTSL 1 (best) BASIC16.59■□□□□ 0.25
TTC28Q96AY4 SETD7-203ENST00000406354 1127 ntTSL 1 (best) BASIC16.59■□□□□ 0.25
TTC28Q96AY4 BAATP1-201ENST00000412284 1225 ntBASIC16.59■□□□□ 0.25
TTC28Q96AY4 SAPCD1-209ENST00000425424 820 ntAPPRIS ALT2 TSL 5 BASIC16.59■□□□□ 0.25
TTC28Q96AY4 AC068134.1-201ENST00000441266 481 ntTSL 3 BASIC16.59■□□□□ 0.25
TTC28Q96AY4 C8orf88-201ENST00000517562 894 ntAPPRIS P1 TSL 2 BASIC16.59■□□□□ 0.25
TTC28Q96AY4 AP001063.1-201ENST00000568332 529 ntBASIC16.59■□□□□ 0.25
TTC28Q96AY4 C19orf70-206ENST00000590389 769 ntTSL 3 BASIC16.59■□□□□ 0.25
TTC28Q96AY4 ZNF586-204ENST00000598183 603 ntTSL 5 BASIC16.59■□□□□ 0.25
TTC28Q96AY4 TUBG2-201ENST00000251412 1761 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
TTC28Q96AY4 TEPSIN-213ENST00000637944 1782 ntAPPRIS ALT2 TSL 5 BASIC16.59■□□□□ 0.25
TTC28Q96AY4 AC006455.5-202ENST00000615248 2284 ntTSL 1 (best) BASIC16.59■□□□□ 0.25
TTC28Q96AY4 PRPS2-203ENST00000398491 1348 ntAPPRIS ALT1 TSL 1 (best) BASIC16.59■□□□□ 0.25
TTC28Q96AY4 BMP2K-208ENST00000628286 3848 ntAPPRIS ALT2 TSL 5 BASIC16.59■□□□□ 0.25
TTC28Q96AY4 DENND2A-201ENST00000275884 3735 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
TTC28Q96AY4 C9orf64-203ENST00000376344 2443 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
TTC28Q96AY4 USE1-206ENST00000595101 1776 ntTSL 2 BASIC16.59■□□□□ 0.25
TTC28Q96AY4 ACSM2A-201ENST00000219054 1988 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
TTC28Q96AY4 PGGT1B-202ENST00000379615 903 ntTSL 1 (best) BASIC16.59■□□□□ 0.25
TTC28Q96AY4 IYD-204ENST00000392255 1180 ntTSL 1 (best) BASIC16.59■□□□□ 0.25
TTC28Q96AY4 PPOX-204ENST00000462866 473 ntTSL 5 BASIC16.59■□□□□ 0.25
TTC28Q96AY4 RPL13AP25-201ENST00000484130 612 ntBASIC16.59■□□□□ 0.25
TTC28Q96AY4 AP000721.1-201ENST00000535431 559 ntAPPRIS P1 TSL 5 BASIC16.59■□□□□ 0.25
TTC28Q96AY4 C14orf132-202ENST00000553782 536 ntTSL 4 BASIC16.59■□□□□ 0.25
TTC28Q96AY4 ANGPTL8-203ENST00000591200 504 ntTSL 1 (best) BASIC16.59■□□□□ 0.25
TTC28Q96AY4 AC009084.3-201ENST00000623356 437 ntBASIC16.59■□□□□ 0.25
TTC28Q96AY4 PLEKHB2-211ENST00000628582 1297 ntTSL 2 BASIC16.59■□□□□ 0.25
Retrieved 100 of 98,524 protein–RNA pairs in 91.2 ms