Protein–RNA interactions for Protein: Q8TF72

SHROOM3, Protein Shroom3, humanhuman

Predictions only

Length 1,996 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHROOM3Q8TF72 HILS1-201ENST00000504307 1219 ntTSL 1 (best) BASIC16.96■□□□□ 0.31
SHROOM3Q8TF72 LINC02123-201ENST00000514869 885 ntTSL 1 (best) BASIC16.96■□□□□ 0.31
SHROOM3Q8TF72 ERCC1-212ENST00000591636 836 ntTSL 2 BASIC16.96■□□□□ 0.31
SHROOM3Q8TF72 GPR42-202ENST00000597214 1182 ntAPPRIS P1 BASIC16.96■□□□□ 0.31
SHROOM3Q8TF72 BIRC7-201ENST00000217169 1368 ntAPPRIS P4 TSL 1 (best) BASIC16.96■□□□□ 0.31
SHROOM3Q8TF72 HTR7P1-202ENST00000624664 4411 ntBASIC16.96■□□□□ 0.31
SHROOM3Q8TF72 C10orf107-201ENST00000330194 1685 ntAPPRIS P2 TSL 1 (best) BASIC16.96■□□□□ 0.31
SHROOM3Q8TF72 ADAM6-201ENST00000606026 1843 ntTSL 2 BASIC16.96■□□□□ 0.31
SHROOM3Q8TF72 NRSN1-203ENST00000378478 2408 ntAPPRIS P1 TSL 1 (best) BASIC16.96■□□□□ 0.31
SHROOM3Q8TF72 AP001372.2-201ENST00000526036 2493 ntTSL 1 (best) BASIC16.96■□□□□ 0.31
SHROOM3Q8TF72 FAM53A-201ENST00000308132 2802 ntAPPRIS P1 TSL 2 BASIC16.96■□□□□ 0.31
SHROOM3Q8TF72 COL27A1-201ENST00000356083 7790 ntAPPRIS P1 TSL 1 (best) BASIC16.96■□□□□ 0.3
SHROOM3Q8TF72 LAT2-204ENST00000398475 2453 ntAPPRIS P2 TSL 1 (best) BASIC16.95■□□□□ 0.3
SHROOM3Q8TF72 GPR158-AS1-201ENST00000449643 2433 ntTSL 2 BASIC16.95■□□□□ 0.3
SHROOM3Q8TF72 PCDHGA11-202ENST00000518882 2263 ntAPPRIS ALT2 TSL 1 (best) BASIC16.95■□□□□ 0.3
SHROOM3Q8TF72 C3orf70-201ENST00000335012 5901 ntAPPRIS P1 TSL 1 (best) BASIC16.95■□□□□ 0.3
SHROOM3Q8TF72 EIPR1-202ENST00000398659 1795 ntTSL 5 BASIC16.95■□□□□ 0.3
SHROOM3Q8TF72 CCDC90B-202ENST00000455220 1550 ntTSL 1 (best) BASIC16.95■□□□□ 0.3
SHROOM3Q8TF72 PNRC2-202ENST00000374468 814 ntAPPRIS P1 TSL 2 BASIC16.95■□□□□ 0.3
SHROOM3Q8TF72 MIR770-201ENST00000390219 98 ntBASIC16.95■□□□□ 0.3
SHROOM3Q8TF72 MECP2-203ENST00000407218 1174 ntTSL 5 BASIC16.95■□□□□ 0.3
SHROOM3Q8TF72 SPDYE11-202ENST00000450699 704 ntBASIC16.95■□□□□ 0.3
SHROOM3Q8TF72 AL669831.5-202ENST00000457084 566 ntTSL 4 BASIC16.95■□□□□ 0.3
SHROOM3Q8TF72 MLF1-210ENST00000484955 1247 ntTSL 1 (best) BASIC16.95■□□□□ 0.3
SHROOM3Q8TF72 LAT-209ENST00000564277 921 ntAPPRIS ALT2 TSL 5 BASIC16.95■□□□□ 0.3
SHROOM3Q8TF72 AC005606.1-201ENST00000567515 504 ntTSL 5 BASIC16.95■□□□□ 0.3
SHROOM3Q8TF72 SPDYE9P-201ENST00000570642 692 ntBASIC16.95■□□□□ 0.3
SHROOM3Q8TF72 LINC00668-203ENST00000579012 605 ntTSL 3 BASIC16.95■□□□□ 0.3
SHROOM3Q8TF72 SPDYE10P-202ENST00000612005 668 ntBASIC16.95■□□□□ 0.3
SHROOM3Q8TF72 SPDYE8P-202ENST00000612377 668 ntBASIC16.95■□□□□ 0.3
SHROOM3Q8TF72 UBE3D-208ENST00000626828 114 ntTSL 5 BASIC16.95■□□□□ 0.3
SHROOM3Q8TF72 PARP9-204ENST00000471785 3040 ntAPPRIS ALT2 TSL 2 BASIC16.95■□□□□ 0.3
SHROOM3Q8TF72 SLC25A45-201ENST00000294187 2196 ntTSL 1 (best) BASIC16.95■□□□□ 0.3
SHROOM3Q8TF72 RALYL-208ENST00000522455 2168 ntAPPRIS ALT2 TSL 2 BASIC16.95■□□□□ 0.3
SHROOM3Q8TF72 FSTL3-206ENST00000592947 2144 ntTSL 1 (best) BASIC16.95■□□□□ 0.3
SHROOM3Q8TF72 AC004951.4-201ENST00000454572 2076 ntTSL 1 (best) BASIC16.95■□□□□ 0.3
SHROOM3Q8TF72 SPATC1-201ENST00000377470 2007 ntAPPRIS P3 TSL 1 (best) BASIC16.95■□□□□ 0.3
SHROOM3Q8TF72 SULT1A2-204ENST00000533150 1991 ntTSL 2 BASIC16.95■□□□□ 0.3
SHROOM3Q8TF72 NIPAL2-202ENST00000430223 4496 ntAPPRIS P1 TSL 1 (best) BASIC16.95■□□□□ 0.3
SHROOM3Q8TF72 NAT9-210ENST00000580301 1860 ntTSL 1 (best) BASIC16.95■□□□□ 0.3
SHROOM3Q8TF72 MEIS3-206ENST00000559524 1828 ntAPPRIS P3 TSL 2 BASIC16.95■□□□□ 0.3
SHROOM3Q8TF72 MSMO1-202ENST00000393766 1789 ntTSL 2 BASIC16.95■□□□□ 0.3
SHROOM3Q8TF72 EIF2B4-212ENST00000622434 1771 ntTSL 5 BASIC16.95■□□□□ 0.3
SHROOM3Q8TF72 ETV4-211ENST00000591713 1727 ntAPPRIS P1 TSL 1 (best) BASIC16.95■□□□□ 0.3
SHROOM3Q8TF72 DENND1A-203ENST00000373624 5010 ntAPPRIS P4 TSL 5 BASIC16.95■□□□□ 0.3
SHROOM3Q8TF72 PDE4DIP-230ENST00000530472 1690 ntTSL 1 (best) BASIC16.95■□□□□ 0.3
SHROOM3Q8TF72 KCTD11-201ENST00000333751 2783 ntAPPRIS P1 BASIC16.95■□□□□ 0.3
SHROOM3Q8TF72 PGAP3-201ENST00000300658 2737 ntAPPRIS P1 TSL 1 (best) BASIC16.95■□□□□ 0.3
SHROOM3Q8TF72 LINC02199-201ENST00000506655 2702 ntBASIC16.95■□□□□ 0.3
SHROOM3Q8TF72 EIF4H-202ENST00000353999 2503 ntAPPRIS ALT1 TSL 1 (best) BASIC16.95■□□□□ 0.3
SHROOM3Q8TF72 SPSB2-203ENST00000519357 1496 ntTSL 2 BASIC16.95■□□□□ 0.3
SHROOM3Q8TF72 FUT4-201ENST00000358752 6059 ntAPPRIS P1 BASIC16.95■□□□□ 0.3
SHROOM3Q8TF72 CPNE6-201ENST00000397016 2235 ntAPPRIS P1 TSL 2 BASIC16.95■□□□□ 0.3
SHROOM3Q8TF72 CPNE6-203ENST00000537691 2233 ntTSL 2 BASIC16.95■□□□□ 0.3
SHROOM3Q8TF72 POMT2-201ENST00000261534 4876 ntAPPRIS P1 TSL 1 (best) BASIC16.95■□□□□ 0.3
SHROOM3Q8TF72 STARD3NL-204ENST00000434197 1341 ntTSL 5 BASIC16.95■□□□□ 0.3
SHROOM3Q8TF72 TYROBP-201ENST00000262629 568 ntAPPRIS P3 TSL 1 (best) BASIC16.95■□□□□ 0.3
SHROOM3Q8TF72 SMN2-210ENST00000511812 867 ntTSL 2 BASIC16.95■□□□□ 0.3
SHROOM3Q8TF72 AC096734.2-201ENST00000562054 433 ntBASIC16.95■□□□□ 0.3
SHROOM3Q8TF72 ELOF1-204ENST00000587806 1172 ntTSL 2 BASIC16.95■□□□□ 0.3
SHROOM3Q8TF72 CROCCP3-203ENST00000589964 255 ntTSL 3 BASIC16.95■□□□□ 0.3
SHROOM3Q8TF72 AC247036.6-201ENST00000632950 410 ntAPPRIS P1 BASIC16.95■□□□□ 0.3
SHROOM3Q8TF72 RNF157-202ENST00000319945 2937 ntAPPRIS ALT2 TSL 2 BASIC16.95■□□□□ 0.3
SHROOM3Q8TF72 AP000487.1-202ENST00000500185 2602 ntTSL 2 BASIC16.94■□□□□ 0.3
SHROOM3Q8TF72 TERT-202ENST00000334602 3210 ntAPPRIS ALT2 TSL 1 (best) BASIC16.94■□□□□ 0.3
SHROOM3Q8TF72 ZNF805-201ENST00000354309 2396 ntTSL 5 BASIC16.94■□□□□ 0.3
SHROOM3Q8TF72 TLE3-226ENST00000627388 5742 ntAPPRIS ALT1 TSL 5 BASIC16.94■□□□□ 0.3
SHROOM3Q8TF72 PITPNA-202ENST00000539476 3612 ntAPPRIS ALT1 TSL 5 BASIC16.94■□□□□ 0.3
SHROOM3Q8TF72 AC005833.1-201ENST00000280684 4237 ntAPPRIS P1 BASIC16.94■□□□□ 0.3
SHROOM3Q8TF72 NFATC4-222ENST00000555590 2830 ntAPPRIS ALT2 TSL 1 (best) BASIC16.94■□□□□ 0.3
SHROOM3Q8TF72 SPOPL-201ENST00000280098 6025 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.3
SHROOM3Q8TF72 RANBP9-201ENST00000011619 3113 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.3
SHROOM3Q8TF72 APOPT1-201ENST00000409074 2523 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.3
SHROOM3Q8TF72 IRF9-203ENST00000557894 1391 ntTSL 5 BASIC16.94■□□□□ 0.3
SHROOM3Q8TF72 RBM26-202ENST00000438724 5152 ntAPPRIS ALT1 TSL 1 (best) BASIC16.94■□□□□ 0.3
SHROOM3Q8TF72 DACH1-203ENST00000619232 2986 ntAPPRIS ALT2 TSL 5 BASIC16.94■□□□□ 0.3
SHROOM3Q8TF72 SCP2-213ENST00000528311 1896 ntTSL 2 BASIC16.94■□□□□ 0.3
SHROOM3Q8TF72 PNRC1-202ENST00000354922 1345 ntTSL 1 (best) BASIC16.94■□□□□ 0.3
SHROOM3Q8TF72 KCNQ5-203ENST00000355635 6623 ntAPPRIS ALT1 TSL 5 BASIC16.94■□□□□ 0.3
SHROOM3Q8TF72 TRAPPC3-210ENST00000617904 1305 ntTSL 2 BASIC16.94■□□□□ 0.3
SHROOM3Q8TF72 DNAAF1-201ENST00000378553 2379 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.3
SHROOM3Q8TF72 CENPT-208ENST00000562787 2345 ntAPPRIS P2 TSL 2 BASIC16.94■□□□□ 0.3
SHROOM3Q8TF72 ST3GAL5-229ENST00000638986 2331 ntAPPRIS ALT2 TSL 5 BASIC16.94■□□□□ 0.3
SHROOM3Q8TF72 KCNIP2-208ENST00000370046 923 ntTSL 5 BASIC16.94■□□□□ 0.3
SHROOM3Q8TF72 APCDD1L-AS1-201ENST00000420279 555 ntTSL 5 BASIC16.94■□□□□ 0.3
SHROOM3Q8TF72 AC010618.3-201ENST00000596643 775 ntTSL 3 BASIC16.94■□□□□ 0.3
SHROOM3Q8TF72 ABHD13-201ENST00000375898 5338 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.3
SHROOM3Q8TF72 DCST1-201ENST00000295542 2279 ntAPPRIS P3 TSL 2 BASIC16.94■□□□□ 0.3
SHROOM3Q8TF72 DLG4-201ENST00000302955 3184 ntAPPRIS P3 TSL 5 BASIC16.94■□□□□ 0.3
SHROOM3Q8TF72 GSR-201ENST00000221130 3119 ntAPPRIS P3 TSL 1 (best) BASIC16.94■□□□□ 0.3
SHROOM3Q8TF72 NOMO2-211ENST00000621364 3921 ntAPPRIS ALT2 TSL 1 (best) BASIC16.94■□□□□ 0.3
SHROOM3Q8TF72 RAB7A-203ENST00000482525 1589 ntTSL 1 (best) BASIC16.94■□□□□ 0.3
SHROOM3Q8TF72 TMUB2-204ENST00000538716 1953 ntAPPRIS ALT1 TSL 2 BASIC16.94■□□□□ 0.3
SHROOM3Q8TF72 EFNB3-201ENST00000226091 3222 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.3
SHROOM3Q8TF72 SLC22A1-202ENST00000366963 1948 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.3
SHROOM3Q8TF72 WHAMMP3-203ENST00000621139 4494 ntTSL 1 (best) BASIC16.94■□□□□ 0.3
SHROOM3Q8TF72 TLE6-202ENST00000452088 1883 ntAPPRIS P3 TSL 1 (best) BASIC16.94■□□□□ 0.3
SHROOM3Q8TF72 GLDC-201ENST00000321612 3900 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.3
SHROOM3Q8TF72 ALDH1A3-201ENST00000329841 3924 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.3
SHROOM3Q8TF72 GUCA1A-203ENST00000394237 2233 ntAPPRIS P1 TSL 2 BASIC16.94■□□□□ 0.3
Retrieved 100 of 98,524 protein–RNA pairs in 40.7 ms