Protein–RNA interactions for Protein: Q86TS7

LINC00643, Putative UPF0730 protein encoded by LINC00643, humanhuman

Predictions only

Length 51 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00643Q86TS7 DYRK3-201ENST00000367106 2329 ntTSL 1 (best) BASIC10.38□□□□□ -0.75
LINC00643Q86TS7 AC009292.1-201ENST00000502156 1986 ntTSL 1 (best) BASIC10.38□□□□□ -0.75
LINC00643Q86TS7 AL121992.1-201ENST00000428945 2845 ntTSL 2 BASIC10.38□□□□□ -0.75
LINC00643Q86TS7 DISC1-222ENST00000622252 6927 ntAPPRIS ALT2 TSL 5 BASIC10.38□□□□□ -0.75
LINC00643Q86TS7 PI4K2A-201ENST00000370631 4189 ntAPPRIS P1 TSL 1 (best) BASIC10.38□□□□□ -0.75
LINC00643Q86TS7 C5orf38-201ENST00000334000 890 ntAPPRIS P3 TSL 1 (best) BASIC10.38□□□□□ -0.75
LINC00643Q86TS7 HLA-J-202ENST00000469281 1241 ntBASIC10.38□□□□□ -0.75
LINC00643Q86TS7 TRIM52-AS1-202ENST00000507434 672 ntTSL 1 (best) BASIC10.38□□□□□ -0.75
LINC00643Q86TS7 MGAT5B-207ENST00000565675 872 ntTSL 1 (best) BASIC10.38□□□□□ -0.75
LINC00643Q86TS7 TPRG1LP1-201ENST00000598702 760 ntBASIC10.38□□□□□ -0.75
LINC00643Q86TS7 FXYD3-214ENST00000605677 633 ntTSL 2 BASIC10.38□□□□□ -0.75
LINC00643Q86TS7 GADD45A-205ENST00000617962 1142 ntTSL 1 (best) BASIC10.38□□□□□ -0.75
LINC00643Q86TS7 MADCAM1-208ENST00000621286 1203 ntAPPRIS ALT2 TSL 5 BASIC10.38□□□□□ -0.75
LINC00643Q86TS7 BAG1-212ENST00000641048 1038 ntAPPRIS P3 BASIC10.38□□□□□ -0.75
LINC00643Q86TS7 MCC-202ENST00000408903 3476 ntAPPRIS P1 TSL 2 BASIC10.38□□□□□ -0.75
LINC00643Q86TS7 AFAP1-201ENST00000358461 7516 ntAPPRIS P3 TSL 2 BASIC10.38□□□□□ -0.75
LINC00643Q86TS7 AC148477.4-201ENST00000613430 1793 ntBASIC10.38□□□□□ -0.75
LINC00643Q86TS7 TPD52L2-206ENST00000358548 2275 ntTSL 2 BASIC10.38□□□□□ -0.75
LINC00643Q86TS7 SLC29A1-204ENST00000371731 2258 ntAPPRIS P1 TSL 5 BASIC10.38□□□□□ -0.75
LINC00643Q86TS7 ANXA2-201ENST00000332680 1444 ntTSL 1 (best) BASIC10.38□□□□□ -0.75
LINC00643Q86TS7 ICAM3-201ENST00000160262 1934 ntAPPRIS P1 TSL 1 (best) BASIC10.38□□□□□ -0.75
LINC00643Q86TS7 PRSS16-203ENST00000421826 1949 ntTSL 2 BASIC10.38□□□□□ -0.75
LINC00643Q86TS7 POLR1D-212ENST00000630983 1931 ntTSL 5 BASIC10.38□□□□□ -0.75
LINC00643Q86TS7 DGKD-201ENST00000264057 6297 ntAPPRIS P3 TSL 1 (best) BASIC10.38□□□□□ -0.75
LINC00643Q86TS7 MARVELD3-201ENST00000268485 2912 ntAPPRIS P3 TSL 1 (best) BASIC10.38□□□□□ -0.75
LINC00643Q86TS7 TPRX1-202ENST00000535759 2059 ntAPPRIS P1 TSL 1 (best) BASIC10.38□□□□□ -0.75
LINC00643Q86TS7 ETV7-202ENST00000340181 1719 ntAPPRIS P3 TSL 1 (best) BASIC10.38□□□□□ -0.75
LINC00643Q86TS7 TRIM46-209ENST00000543729 1703 ntTSL 5 BASIC10.38□□□□□ -0.75
LINC00643Q86TS7 CILP2-201ENST00000291495 4199 ntAPPRIS P2 TSL 1 (best) BASIC10.38□□□□□ -0.75
LINC00643Q86TS7 LIMD2-201ENST00000259006 3193 ntAPPRIS P1 TSL 1 (best) BASIC10.38□□□□□ -0.75
LINC00643Q86TS7 DLG4-203ENST00000399510 3975 ntTSL 1 (best) BASIC10.38□□□□□ -0.75
LINC00643Q86TS7 ADAM12-201ENST00000368676 3313 ntAPPRIS ALT2 TSL 1 (best) BASIC10.38□□□□□ -0.75
LINC00643Q86TS7 DRC3-203ENST00000399187 2008 ntAPPRIS P1 TSL 1 (best) BASIC10.38□□□□□ -0.75
LINC00643Q86TS7 FBXL19-204ENST00000471231 3641 ntTSL 2 BASIC10.38□□□□□ -0.75
LINC00643Q86TS7 KIAA0319-201ENST00000378214 6802 ntAPPRIS P3 TSL 1 (best) BASIC10.38□□□□□ -0.75
LINC00643Q86TS7 LIPE-AS1-201ENST00000457234 1501 ntTSL 1 (best) BASIC10.38□□□□□ -0.75
LINC00643Q86TS7 CTBP1-AS2-206ENST00000581398 5652 ntBASIC10.38□□□□□ -0.75
LINC00643Q86TS7 FUT1-201ENST00000310160 4246 ntAPPRIS P1 TSL 5 BASIC10.38□□□□□ -0.75
LINC00643Q86TS7 HNRNPH1-203ENST00000393432 2279 ntAPPRIS P1 TSL 1 (best) BASIC10.37□□□□□ -0.75
LINC00643Q86TS7 PRDM10-202ENST00000358825 6322 ntTSL 1 (best) BASIC10.37□□□□□ -0.75
LINC00643Q86TS7 PRDM10-203ENST00000360871 6301 ntAPPRIS P1 TSL 1 (best) BASIC10.37□□□□□ -0.75
LINC00643Q86TS7 NFATC4-207ENST00000553469 2566 ntAPPRIS ALT2 TSL 1 (best) BASIC10.37□□□□□ -0.75
LINC00643Q86TS7 GLI4-201ENST00000340042 1341 ntAPPRIS P1 TSL 1 (best) BASIC10.37□□□□□ -0.75
LINC00643Q86TS7 P2RX3-204ENST00000616487 1346 ntTSL 5 BASIC10.37□□□□□ -0.75
LINC00643Q86TS7 RDX-218ENST00000544551 4117 ntTSL 2 BASIC10.37□□□□□ -0.75
LINC00643Q86TS7 PRDM16-206ENST00000511072 4282 ntAPPRIS ALT2 TSL 5 BASIC10.37□□□□□ -0.75
LINC00643Q86TS7 ACBD4-202ENST00000376955 1453 ntTSL 2 BASIC10.37□□□□□ -0.75
LINC00643Q86TS7 AKAP2-203ENST00000434623 4400 ntAPPRIS ALT2 TSL 1 (best) BASIC10.37□□□□□ -0.75
LINC00643Q86TS7 ASAH1-258ENST00000637790 3042 ntAPPRIS P2 TSL 1 (best) BASIC10.37□□□□□ -0.75
LINC00643Q86TS7 SCLY-202ENST00000409736 1774 ntTSL 1 (best) BASIC10.37□□□□□ -0.75
LINC00643Q86TS7 WDR25-204ENST00000554175 2055 ntTSL 1 (best) BASIC10.37□□□□□ -0.75
LINC00643Q86TS7 FAM98B-202ENST00000397609 4388 ntAPPRIS P2 TSL 5 BASIC10.37□□□□□ -0.75
LINC00643Q86TS7 PRKAG3-206ENST00000529249 2222 ntAPPRIS P1 TSL 1 (best) BASIC10.37□□□□□ -0.75
LINC00643Q86TS7 ARHGEF17-201ENST00000263674 7853 ntAPPRIS P1 TSL 1 (best) BASIC10.37□□□□□ -0.75
LINC00643Q86TS7 C6orf120-201ENST00000332290 2667 ntAPPRIS P1 BASIC10.37□□□□□ -0.75
LINC00643Q86TS7 AC093668.2-201ENST00000481893 3569 ntTSL 2 BASIC10.37□□□□□ -0.75
LINC00643Q86TS7 AC105052.1-201ENST00000519541 3569 ntAPPRIS P1 TSL 2 BASIC10.37□□□□□ -0.75
LINC00643Q86TS7 TNFRSF12A-201ENST00000326577 1033 ntAPPRIS P1 TSL 1 (best) BASIC10.37□□□□□ -0.75
LINC00643Q86TS7 ALDH3B2-201ENST00000349015 2649 ntAPPRIS P1 TSL 5 BASIC10.37□□□□□ -0.75
LINC00643Q86TS7 ISG20L2-202ENST00000368219 2310 ntAPPRIS P1 TSL 5 BASIC10.37□□□□□ -0.75
LINC00643Q86TS7 HTR1B-201ENST00000369947 2021 ntAPPRIS P1 BASIC10.37□□□□□ -0.75
LINC00643Q86TS7 NINJ1-201ENST00000375446 1281 ntAPPRIS P1 TSL 1 (best) BASIC10.37□□□□□ -0.75
LINC00643Q86TS7 IL11RA-202ENST00000441545 1700 ntAPPRIS P1 TSL 5 BASIC10.37□□□□□ -0.75
LINC00643Q86TS7 LINC00969-219ENST00000453324 1439 ntTSL 1 (best) BASIC10.37□□□□□ -0.75
LINC00643Q86TS7 AL442663.3-201ENST00000554737 1000 ntTSL 3 BASIC10.37□□□□□ -0.75
LINC00643Q86TS7 AL162412.1-201ENST00000567129 965 ntBASIC10.37□□□□□ -0.75
LINC00643Q86TS7 AC233992.3-201ENST00000607491 485 ntBASIC10.37□□□□□ -0.75
LINC00643Q86TS7 LINC02538-201ENST00000609107 4569 ntTSL 2 BASIC10.37□□□□□ -0.75
LINC00643Q86TS7 GOLGA6L10-207ENST00000610657 1705 ntAPPRIS P2 TSL 2 BASIC10.37□□□□□ -0.75
LINC00643Q86TS7 CAP2-209ENST00000616440 2776 ntTSL 2 BASIC10.37□□□□□ -0.75
LINC00643Q86TS7 BRPF3-201ENST00000339717 4820 ntTSL 5 BASIC10.37□□□□□ -0.75
LINC00643Q86TS7 CRYBG2-201ENST00000308182 5245 ntAPPRIS P5 TSL 5 BASIC10.37□□□□□ -0.75
LINC00643Q86TS7 HOXB8-201ENST00000239144 1823 ntAPPRIS P2 TSL 2 BASIC10.37□□□□□ -0.75
LINC00643Q86TS7 SMC5-AS1-201ENST00000594708 1818 ntTSL 2 BASIC10.37□□□□□ -0.75
LINC00643Q86TS7 SH2D2A-202ENST00000368199 1658 ntAPPRIS P3 TSL 1 (best) BASIC10.37□□□□□ -0.75
LINC00643Q86TS7 MOK-233ENST00000524214 1539 ntTSL 2 BASIC10.37□□□□□ -0.75
LINC00643Q86TS7 FGD6-203ENST00000546711 4568 ntTSL 5 BASIC10.37□□□□□ -0.75
LINC00643Q86TS7 PARVB-210ENST00000619710 1530 ntTSL 1 (best) BASIC10.37□□□□□ -0.75
LINC00643Q86TS7 TVP23C-210ENST00000584811 2989 ntTSL 1 (best) BASIC10.37□□□□□ -0.75
LINC00643Q86TS7 ACSM2A-209ENST00000573854 2837 ntAPPRIS P1 TSL 1 (best) BASIC10.37□□□□□ -0.75
LINC00643Q86TS7 LAPTM5-201ENST00000294507 2223 ntAPPRIS P1 TSL 1 (best) BASIC10.37□□□□□ -0.75
LINC00643Q86TS7 MANSC1-201ENST00000396349 2220 ntTSL 2 BASIC10.37□□□□□ -0.75
LINC00643Q86TS7 ATE1-203ENST00000369043 4900 ntAPPRIS ALT1 TSL 1 (best) BASIC10.37□□□□□ -0.75
LINC00643Q86TS7 C2orf81-202ENST00000612891 1902 ntAPPRIS ALT2 TSL 5 BASIC10.37□□□□□ -0.75
LINC00643Q86TS7 FFAR4-201ENST00000371481 3605 ntAPPRIS P1 TSL 1 (best) BASIC10.37□□□□□ -0.75
LINC00643Q86TS7 GRK3-201ENST00000324198 9103 ntAPPRIS P1 TSL 1 (best) BASIC10.36□□□□□ -0.75
LINC00643Q86TS7 PDE9A-205ENST00000349112 1616 ntTSL 1 (best) BASIC10.36□□□□□ -0.75
LINC00643Q86TS7 PYGO2-201ENST00000368456 1306 ntTSL 2 BASIC10.36□□□□□ -0.75
LINC00643Q86TS7 SMTN-201ENST00000333137 3295 ntAPPRIS ALT2 TSL 1 (best) BASIC10.36□□□□□ -0.75
LINC00643Q86TS7 NRSN2-210ENST00000621012 1852 ntAPPRIS P1 TSL 1 (best) BASIC10.36□□□□□ -0.75
LINC00643Q86TS7 AL132857.2-201ENST00000634305 1737 ntTSL 5 BASIC10.36□□□□□ -0.75
LINC00643Q86TS7 ZCCHC7-209ENST00000534928 2828 ntAPPRIS P1 TSL 1 (best) BASIC10.36□□□□□ -0.75
LINC00643Q86TS7 ZBTB7B-207ENST00000535420 3777 ntAPPRIS P3 TSL 5 BASIC10.36□□□□□ -0.75
LINC00643Q86TS7 TM4SF4-201ENST00000305354 2101 ntAPPRIS P1 TSL 1 (best) BASIC10.36□□□□□ -0.75
LINC00643Q86TS7 NAALADL1-203ENST00000356632 2118 ntTSL 5 BASIC10.36□□□□□ -0.75
LINC00643Q86TS7 NEK5-204ENST00000617045 2127 ntAPPRIS P1 TSL 2 BASIC10.36□□□□□ -0.75
LINC00643Q86TS7 NOL3-204ENST00000564053 1592 ntAPPRIS ALT2 TSL 2 BASIC10.36□□□□□ -0.75
LINC00643Q86TS7 TICRR-201ENST00000268138 6775 ntAPPRIS P3 TSL 5 BASIC10.36□□□□□ -0.75
LINC00643Q86TS7 DNAJC13-201ENST00000260818 7730 ntAPPRIS P1 TSL 1 (best) BASIC10.36□□□□□ -0.75
LINC00643Q86TS7 CD99L2-205ENST00000437787 3493 ntTSL 2 BASIC10.36□□□□□ -0.75
Retrieved 100 of 98,524 protein–RNA pairs in 48.6 ms