Protein–RNA interactions for Protein: Q70EL1

USP54, Inactive ubiquitin carboxyl-terminal hydrolase 54, humanhuman

Predictions only

Length 1,684 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP54Q70EL1 HACE1-202ENST00000369125 3102 ntTSL 2 BASIC21.82■■□□□ 1.08
USP54Q70EL1 RBBP7-204ENST00000404022 1904 ntTSL 5 BASIC21.82■■□□□ 1.08
USP54Q70EL1 POMP-201ENST00000380842 1330 ntAPPRIS P1 TSL 1 (best) BASIC21.82■■□□□ 1.08
USP54Q70EL1 VGLL4-202ENST00000413604 1554 ntTSL 2 BASIC21.82■■□□□ 1.08
USP54Q70EL1 PKLR-201ENST00000342741 2083 ntTSL 1 (best) BASIC21.82■■□□□ 1.08
USP54Q70EL1 NFATC4-215ENST00000554661 2631 ntAPPRIS ALT2 TSL 1 (best) BASIC21.82■■□□□ 1.08
USP54Q70EL1 TM6SF2-201ENST00000389363 1505 ntAPPRIS P1 TSL 1 (best) BASIC21.82■■□□□ 1.08
USP54Q70EL1 AC112492.5-201ENST00000421897 457 ntBASIC21.82■■□□□ 1.08
USP54Q70EL1 ASF1B-202ENST00000474890 765 ntTSL 2 BASIC21.82■■□□□ 1.08
USP54Q70EL1 AC025442.1-201ENST00000521596 481 ntTSL 2 BASIC21.82■■□□□ 1.08
USP54Q70EL1 AP000943.3-201ENST00000536540 954 ntTSL 3 BASIC21.82■■□□□ 1.08
USP54Q70EL1 ACTL9-201ENST00000324436 1426 ntAPPRIS P1 BASIC21.81■■□□□ 1.08
USP54Q70EL1 STRN3-202ENST00000357479 2799 ntAPPRIS P1 TSL 5 BASIC21.81■■□□□ 1.08
USP54Q70EL1 SAMD4A-208ENST00000555192 1337 ntTSL 1 (best) BASIC21.81■■□□□ 1.08
USP54Q70EL1 UBL7-209ENST00000567435 1720 ntAPPRIS P1 TSL 1 (best) BASIC21.81■■□□□ 1.08
USP54Q70EL1 PLEKHB1-203ENST00000398492 2275 ntAPPRIS ALT1 TSL 1 (best) BASIC21.81■■□□□ 1.08
USP54Q70EL1 AC005498.3-201ENST00000596587 2045 ntTSL 1 (best) BASIC21.81■■□□□ 1.08
USP54Q70EL1 NPY4R-202ENST00000612632 1800 ntAPPRIS P1 TSL 1 (best) BASIC21.81■■□□□ 1.08
USP54Q70EL1 NPY4R2-202ENST00000613306 1800 ntAPPRIS P1 TSL 1 (best) BASIC21.81■■□□□ 1.08
USP54Q70EL1 AP000317.2-201ENST00000362077 641 ntTSL 3 BASIC21.81■■□□□ 1.08
USP54Q70EL1 DIRC3-201ENST00000423123 552 ntAPPRIS P1 TSL 4 BASIC21.81■■□□□ 1.08
USP54Q70EL1 AC129507.3-201ENST00000571512 913 ntTSL 2 BASIC21.81■■□□□ 1.08
USP54Q70EL1 AL162274.1-201ENST00000617191 1098 ntBASIC21.81■■□□□ 1.08
USP54Q70EL1 SERF2-217ENST00000630046 862 ntTSL 5 BASIC21.81■■□□□ 1.08
USP54Q70EL1 VEPH1-218ENST00000494677 1714 ntTSL 1 (best) BASIC21.81■■□□□ 1.08
USP54Q70EL1 KCNC4-203ENST00000413138 3018 ntAPPRIS ALT2 TSL 5 BASIC21.81■■□□□ 1.08
USP54Q70EL1 TFCP2-204ENST00000548115 1862 ntTSL 5 BASIC21.81■■□□□ 1.08
USP54Q70EL1 TAF1C-222ENST00000570117 2349 ntAPPRIS ALT2 TSL 2 BASIC21.81■■□□□ 1.08
USP54Q70EL1 CDH22-201ENST00000372262 3661 ntAPPRIS P1 TSL 1 (best) BASIC21.81■■□□□ 1.08
USP54Q70EL1 LARGE2-201ENST00000325468 2522 ntAPPRIS P3 TSL 1 (best) BASIC21.81■■□□□ 1.08
USP54Q70EL1 LARGE2-202ENST00000401752 2516 ntAPPRIS P3 TSL 1 (best) BASIC21.81■■□□□ 1.08
USP54Q70EL1 GDF5-202ENST00000374372 2572 ntAPPRIS P1 TSL 1 (best) BASIC21.8■■□□□ 1.08
USP54Q70EL1 PODXL-202ENST00000378555 2105 ntAPPRIS P3 TSL 1 (best) BASIC21.8■■□□□ 1.08
USP54Q70EL1 RASSF1-205ENST00000395126 1657 ntTSL 1 (best) BASIC21.8■■□□□ 1.08
USP54Q70EL1 IDH3G-204ENST00000427365 1526 ntTSL 5 BASIC21.8■■□□□ 1.08
USP54Q70EL1 RBFOX3-212ENST00000584778 1547 ntAPPRIS ALT2 TSL 5 BASIC21.8■■□□□ 1.08
USP54Q70EL1 ZNF302-206ENST00000505242 2849 ntAPPRIS P3 TSL 1 (best) BASIC21.8■■□□□ 1.08
USP54Q70EL1 CPZ-203ENST00000382480 2538 ntTSL 1 (best) BASIC21.8■■□□□ 1.08
USP54Q70EL1 UBTD2-201ENST00000393792 3301 ntAPPRIS P1 TSL 1 (best) BASIC21.8■■□□□ 1.08
USP54Q70EL1 CTSB-220ENST00000531089 1436 ntAPPRIS P1 TSL 5 BASIC21.8■■□□□ 1.08
USP54Q70EL1 LYPLA2-201ENST00000374501 1117 ntTSL 2 BASIC21.8■■□□□ 1.08
USP54Q70EL1 PABPN1L-201ENST00000411789 873 ntTSL 1 (best) BASIC21.8■■□□□ 1.08
USP54Q70EL1 BMP7-AS1-201ENST00000445956 436 ntTSL 2 BASIC21.8■■□□□ 1.08
USP54Q70EL1 AC147067.1-201ENST00000466692 579 ntTSL 2 BASIC21.8■■□□□ 1.08
USP54Q70EL1 AC084864.1-201ENST00000496217 305 ntTSL 3 BASIC21.8■■□□□ 1.08
USP54Q70EL1 DCUN1D5-209ENST00000531543 1030 ntTSL 5 BASIC21.8■■□□□ 1.08
USP54Q70EL1 LINC02298-201ENST00000546968 965 ntTSL 5 BASIC21.8■■□□□ 1.08
USP54Q70EL1 ELOF1-206ENST00000590700 585 ntAPPRIS P1 TSL 3 BASIC21.8■■□□□ 1.08
USP54Q70EL1 SPIB-207ENST00000597855 564 ntTSL 4 BASIC21.8■■□□□ 1.08
USP54Q70EL1 DMRT2-202ENST00000302441 1495 ntTSL 5 BASIC21.8■■□□□ 1.08
USP54Q70EL1 HACD3-206ENST00000565299 1465 ntTSL 5 BASIC21.8■■□□□ 1.08
USP54Q70EL1 RIBC2-202ENST00000614167 1479 ntAPPRIS P1 TSL 1 (best) BASIC21.8■■□□□ 1.08
USP54Q70EL1 SNHG22-201ENST00000589499 1615 ntTSL 2 BASIC21.79■■□□□ 1.08
USP54Q70EL1 JAG2-201ENST00000331782 5835 ntAPPRIS P1 TSL 1 (best) BASIC21.79■■□□□ 1.08
USP54Q70EL1 LGALS2-201ENST00000215886 591 ntAPPRIS P1 TSL 1 (best) BASIC21.79■■□□□ 1.08
USP54Q70EL1 MRPL55-201ENST00000295008 632 ntAPPRIS P1 TSL 2 BASIC21.79■■□□□ 1.08
USP54Q70EL1 Z98749.2-207ENST00000443658 679 ntTSL 2 BASIC21.79■■□□□ 1.08
USP54Q70EL1 H2AFV-207ENST00000446531 1041 ntTSL 2 BASIC21.79■■□□□ 1.08
USP54Q70EL1 AJ271736.1-201ENST00000483543 773 ntTSL 5 BASIC21.79■■□□□ 1.08
USP54Q70EL1 BRF2-202ENST00000520601 1192 ntTSL 3 BASIC21.79■■□□□ 1.08
USP54Q70EL1 AC105339.1-202ENST00000559535 1283 ntTSL 5 BASIC21.79■■□□□ 1.08
USP54Q70EL1 AC079336.1-201ENST00000583156 420 ntTSL 3 BASIC21.79■■□□□ 1.08
USP54Q70EL1 CD300LG-205ENST00000586233 942 ntAPPRIS ALT2 TSL 1 (best) BASIC21.79■■□□□ 1.08
USP54Q70EL1 NCAPH2-205ENST00000420993 2037 ntAPPRIS P3 TSL 1 (best) BASIC21.79■■□□□ 1.08
USP54Q70EL1 ERLEC1-201ENST00000185150 2433 ntAPPRIS P3 TSL 1 (best) BASIC21.79■■□□□ 1.08
USP54Q70EL1 OPA3-202ENST00000323060 2250 ntAPPRIS ALT2 TSL 1 (best) BASIC21.79■■□□□ 1.08
USP54Q70EL1 AL592424.1-201ENST00000563624 1536 ntBASIC21.79■■□□□ 1.08
USP54Q70EL1 BMP2K-208ENST00000628286 3848 ntAPPRIS ALT2 TSL 5 BASIC21.79■■□□□ 1.08
USP54Q70EL1 FCHO1-201ENST00000252771 3118 ntAPPRIS P1 TSL 5 BASIC21.79■■□□□ 1.08
USP54Q70EL1 CYP2R1-201ENST00000334636 2235 ntAPPRIS P1 TSL 1 (best) BASIC21.79■■□□□ 1.08
USP54Q70EL1 BRINP1-202ENST00000373964 1641 ntTSL 1 (best) BASIC21.79■■□□□ 1.08
USP54Q70EL1 QRFP-202ENST00000623824 1658 ntAPPRIS P1 TSL 3 BASIC21.79■■□□□ 1.08
USP54Q70EL1 AC007389.4-201ENST00000454674 793 ntBASIC21.79■■□□□ 1.08
USP54Q70EL1 AC005746.1-201ENST00000589244 672 ntTSL 3 BASIC21.79■■□□□ 1.08
USP54Q70EL1 GALNT14-201ENST00000324589 2169 ntTSL 2 BASIC21.78■■□□□ 1.08
USP54Q70EL1 SEMA6D-205ENST00000389425 2318 ntTSL 1 (best) BASIC21.78■■□□□ 1.08
USP54Q70EL1 SRPX-201ENST00000378533 1874 ntAPPRIS P3 TSL 1 (best) BASIC21.78■■□□□ 1.08
USP54Q70EL1 TLE6-202ENST00000452088 1883 ntAPPRIS P3 TSL 1 (best) BASIC21.78■■□□□ 1.08
USP54Q70EL1 WDR70-202ENST00000504564 1526 ntTSL 1 (best) BASIC21.78■■□□□ 1.08
USP54Q70EL1 LCMT2-202ENST00000567039 1545 ntTSL 2 BASIC21.78■■□□□ 1.08
USP54Q70EL1 TSPAN4-201ENST00000346501 882 ntTSL 3 BASIC21.78■■□□□ 1.08
USP54Q70EL1 FO393414.2-201ENST00000405153 598 ntBASIC21.78■■□□□ 1.08
USP54Q70EL1 ABHD11-AS1-201ENST00000427153 662 ntTSL 5 BASIC21.78■■□□□ 1.08
USP54Q70EL1 AC009163.1-201ENST00000530512 573 ntTSL 4 BASIC21.78■■□□□ 1.08
USP54Q70EL1 AC009065.5-201ENST00000565937 596 ntTSL 3 BASIC21.78■■□□□ 1.08
USP54Q70EL1 ORC6-206ENST00000568364 888 ntTSL 5 BASIC21.78■■□□□ 1.08
USP54Q70EL1 PCSK6-221ENST00000632686 1210 ntTSL 5 BASIC21.78■■□□□ 1.08
USP54Q70EL1 PRSS36-201ENST00000268281 2840 ntAPPRIS P3 TSL 1 (best) BASIC21.78■■□□□ 1.08
USP54Q70EL1 RBCK1-215ENST00000640614 2599 ntTSL 5 BASIC21.78■■□□□ 1.08
USP54Q70EL1 HMBS-209ENST00000537841 1559 ntTSL 5 BASIC21.78■■□□□ 1.08
USP54Q70EL1 HMGA1-204ENST00000401473 1887 ntAPPRIS ALT1 TSL 1 (best) BASIC21.78■■□□□ 1.08
USP54Q70EL1 NARFL-218ENST00000568545 2486 ntTSL 2 BASIC21.78■■□□□ 1.08
USP54Q70EL1 TEAD2-203ENST00000539846 1444 ntTSL 2 BASIC21.77■■□□□ 1.08
USP54Q70EL1 LSMEM2-201ENST00000316436 1494 ntAPPRIS P1 TSL 1 (best) BASIC21.77■■□□□ 1.08
USP54Q70EL1 SLC18B1-201ENST00000275227 2368 ntAPPRIS P1 TSL 1 (best) BASIC21.77■■□□□ 1.08
USP54Q70EL1 PIP4K2B-204ENST00000619039 5734 ntAPPRIS P1 TSL 1 (best) BASIC21.77■■□□□ 1.08
USP54Q70EL1 RSPH6A-201ENST00000221538 2456 ntAPPRIS P2 TSL 1 (best) BASIC21.77■■□□□ 1.08
USP54Q70EL1 DLG4-201ENST00000302955 3184 ntAPPRIS P3 TSL 5 BASIC21.77■■□□□ 1.08
USP54Q70EL1 SPATC1L-202ENST00000330205 1182 ntTSL 1 (best) BASIC21.77■■□□□ 1.08
USP54Q70EL1 RAB34-206ENST00000415040 1293 ntTSL 2 BASIC21.77■■□□□ 1.08
Retrieved 100 of 98,524 protein–RNA pairs in 35.9 ms