Protein–RNA interactions for Protein: Q2UY09

COL28A1, Collagen alpha-1(XXVIII) chain, humanhuman

Predictions only

Length 1,125 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL28A1Q2UY09 NOL4L-205ENST00000375678 2042 ntAPPRIS ALT2 TSL 2 BASIC16.07■□□□□ 0.16
COL28A1Q2UY09 RTL8B-201ENST00000391440 2026 ntAPPRIS P1 BASIC16.07■□□□□ 0.16
COL28A1Q2UY09 SHTN1-203ENST00000392901 2190 ntAPPRIS ALT2 TSL 2 BASIC16.07■□□□□ 0.16
COL28A1Q2UY09 AC131160.1-201ENST00000639401 3058 ntAPPRIS P1 TSL 5 BASIC16.07■□□□□ 0.16
COL28A1Q2UY09 CYP2U1-202ENST00000508453 3125 ntTSL 1 (best) BASIC16.07■□□□□ 0.16
COL28A1Q2UY09 TBC1D2-205ENST00000465784 3349 ntAPPRIS P1 TSL 1 (best) BASIC16.07■□□□□ 0.16
COL28A1Q2UY09 ORAI2-205ENST00000478730 5531 ntAPPRIS P1 TSL 2 BASIC16.06■□□□□ 0.16
COL28A1Q2UY09 WHAMMP3-203ENST00000621139 4494 ntTSL 1 (best) BASIC16.06■□□□□ 0.16
COL28A1Q2UY09 AMFR-201ENST00000290649 3600 ntAPPRIS P2 TSL 1 (best) BASIC16.06■□□□□ 0.16
COL28A1Q2UY09 STXBP3-201ENST00000370008 2478 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
COL28A1Q2UY09 CLDN9-201ENST00000445369 2050 ntAPPRIS P1 BASIC16.06■□□□□ 0.16
COL28A1Q2UY09 HLA-A-204ENST00000396634 1868 ntAPPRIS P1 BASIC16.06■□□□□ 0.16
COL28A1Q2UY09 C14orf93-204ENST00000397377 1776 ntTSL 1 (best) BASIC16.06■□□□□ 0.16
COL28A1Q2UY09 ZNF589-203ENST00000427617 1677 ntTSL 2 BASIC16.06■□□□□ 0.16
COL28A1Q2UY09 PSMA1-209ENST00000530457 1527 ntTSL 5 BASIC16.06■□□□□ 0.16
COL28A1Q2UY09 DLC1-203ENST00000358919 4392 ntAPPRIS ALT2 TSL 1 (best) BASIC16.06■□□□□ 0.16
COL28A1Q2UY09 IL25-201ENST00000329715 1315 ntAPPRIS P3 TSL 1 (best) BASIC16.06■□□□□ 0.16
COL28A1Q2UY09 MRNIP-201ENST00000292586 1238 ntAPPRIS P4 TSL 1 (best) BASIC16.06■□□□□ 0.16
COL28A1Q2UY09 GUCA2A-201ENST00000357001 569 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
COL28A1Q2UY09 CALY-202ENST00000368555 783 ntTSL 2 BASIC16.06■□□□□ 0.16
COL28A1Q2UY09 NME1-NME2-202ENST00000393193 1021 ntAPPRIS P2 TSL 2 BASIC16.06■□□□□ 0.16
COL28A1Q2UY09 C2orf88-205ENST00000443551 692 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
COL28A1Q2UY09 GIMAP3P-201ENST00000495150 836 ntBASIC16.06■□□□□ 0.16
COL28A1Q2UY09 LEPROTL1-203ENST00000518001 589 ntTSL 4 BASIC16.06■□□□□ 0.16
COL28A1Q2UY09 ZFPL1-207ENST00000526791 384 ntTSL 3 BASIC16.06■□□□□ 0.16
COL28A1Q2UY09 DRAP1-208ENST00000532933 751 ntTSL 1 (best) BASIC16.06■□□□□ 0.16
COL28A1Q2UY09 AC138466.1-201ENST00000535242 391 ntTSL 3 BASIC16.06■□□□□ 0.16
COL28A1Q2UY09 FKBP11-208ENST00000550765 1030 ntAPPRIS P3 TSL 1 (best) BASIC16.06■□□□□ 0.16
COL28A1Q2UY09 FAM192A-212ENST00000566077 1066 ntTSL 3 BASIC16.06■□□□□ 0.16
COL28A1Q2UY09 AC009053.3-201ENST00000567148 574 ntTSL 4 BASIC16.06■□□□□ 0.16
COL28A1Q2UY09 AC026471.2-201ENST00000569782 655 ntTSL 2 BASIC16.06■□□□□ 0.16
COL28A1Q2UY09 ARL16-202ENST00000570561 768 ntTSL 2 BASIC16.06■□□□□ 0.16
COL28A1Q2UY09 MRPS23-202ENST00000578444 580 ntTSL 2 BASIC16.06■□□□□ 0.16
COL28A1Q2UY09 AC027575.2-201ENST00000585258 1295 ntTSL 1 (best) BASIC16.06■□□□□ 0.16
COL28A1Q2UY09 AC040963.1-202ENST00000589729 644 ntTSL 5 BASIC16.06■□□□□ 0.16
COL28A1Q2UY09 ACTL9-202ENST00000612068 1252 ntBASIC16.06■□□□□ 0.16
COL28A1Q2UY09 HIST1H2AK-201ENST00000618958 393 ntAPPRIS P1 BASIC16.06■□□□□ 0.16
COL28A1Q2UY09 BCRP3-202ENST00000621462 1021 ntTSL 3 BASIC16.06■□□□□ 0.16
COL28A1Q2UY09 SMAD3-201ENST00000327367 6247 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
COL28A1Q2UY09 PITPNA-202ENST00000539476 3612 ntAPPRIS ALT1 TSL 5 BASIC16.06■□□□□ 0.16
COL28A1Q2UY09 CHRD-202ENST00000348986 3155 ntAPPRIS ALT2 TSL 5 BASIC16.06■□□□□ 0.16
COL28A1Q2UY09 IGF2-204ENST00000381406 5179 ntAPPRIS ALT1 TSL 2 BASIC16.06■□□□□ 0.16
COL28A1Q2UY09 PIF1-201ENST00000268043 2687 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
COL28A1Q2UY09 DKK3-201ENST00000326932 2636 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
COL28A1Q2UY09 NFS1-202ENST00000374085 2645 ntTSL 2 BASIC16.06■□□□□ 0.16
COL28A1Q2UY09 PLCB2-202ENST00000456256 4242 ntTSL 1 (best) BASIC16.06■□□□□ 0.16
COL28A1Q2UY09 AD000864.1-201ENST00000624076 2295 ntBASIC16.06■□□□□ 0.16
COL28A1Q2UY09 DPP6-202ENST00000377770 3710 ntAPPRIS P4 TSL 1 (best) BASIC16.06■□□□□ 0.16
COL28A1Q2UY09 FBXL16-202ENST00000397621 3547 ntAPPRIS P1 TSL 5 BASIC16.06■□□□□ 0.16
COL28A1Q2UY09 LRRD1-201ENST00000343318 2073 ntTSL 1 (best) BASIC16.06■□□□□ 0.16
COL28A1Q2UY09 ASB6-203ENST00000450050 4535 ntTSL 1 (best) BASIC16.06■□□□□ 0.16
COL28A1Q2UY09 TGDS-201ENST00000261296 1905 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
COL28A1Q2UY09 GGA1-203ENST00000343632 3159 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
COL28A1Q2UY09 HARS-201ENST00000307633 1780 ntTSL 2 BASIC16.05■□□□□ 0.16
COL28A1Q2UY09 PGRMC1-202ENST00000535419 1762 ntTSL 2 BASIC16.05■□□□□ 0.16
COL28A1Q2UY09 KIF16B-201ENST00000354981 5261 ntAPPRIS P3 TSL 1 (best) BASIC16.05■□□□□ 0.16
COL28A1Q2UY09 MIOX-202ENST00000395732 1658 ntTSL 1 (best) BASIC16.05■□□□□ 0.16
COL28A1Q2UY09 UXT-AS1-201ENST00000590504 1525 ntBASIC16.05■□□□□ 0.16
COL28A1Q2UY09 AC018695.7-201ENST00000624587 2492 ntBASIC16.05■□□□□ 0.16
COL28A1Q2UY09 BACE1-201ENST00000313005 6326 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
COL28A1Q2UY09 NTNG1-203ENST00000370066 1443 ntTSL 1 (best) BASIC16.05■□□□□ 0.16
COL28A1Q2UY09 KIF25-201ENST00000351261 1326 ntTSL 5 BASIC16.05■□□□□ 0.16
COL28A1Q2UY09 PDCD1-201ENST00000334409 2114 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
COL28A1Q2UY09 KRTAP6-3-201ENST00000391624 636 ntAPPRIS P1 BASIC16.05■□□□□ 0.16
COL28A1Q2UY09 AC093151.3-201ENST00000425554 623 ntTSL 2 BASIC16.05■□□□□ 0.16
COL28A1Q2UY09 MSLNL-201ENST00000442466 2109 ntAPPRIS P1 TSL 5 BASIC16.05■□□□□ 0.16
COL28A1Q2UY09 AL356489.1-201ENST00000449144 1144 ntTSL 3 BASIC16.05■□□□□ 0.16
COL28A1Q2UY09 AC002558.1-201ENST00000488906 803 ntBASIC16.05■□□□□ 0.16
COL28A1Q2UY09 IGHV3-62-201ENST00000520057 340 ntBASIC16.05■□□□□ 0.16
COL28A1Q2UY09 BATF2-204ENST00000527716 1230 ntTSL 2 BASIC16.05■□□□□ 0.16
COL28A1Q2UY09 TOMM5-205ENST00000544379 635 ntTSL 2 BASIC16.05■□□□□ 0.16
COL28A1Q2UY09 AC109462.3-201ENST00000573934 613 ntBASIC16.05■□□□□ 0.16
COL28A1Q2UY09 IFT20-214ENST00000585089 1071 ntTSL 1 (best) BASIC16.05■□□□□ 0.16
COL28A1Q2UY09 AC019129.2-201ENST00000609837 1235 ntBASIC16.05■□□□□ 0.16
COL28A1Q2UY09 GPER1-207ENST00000619052 571 ntTSL 2 BASIC16.05■□□□□ 0.16
COL28A1Q2UY09 SLC1A4-201ENST00000234256 4561 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
COL28A1Q2UY09 ENC1-205ENST00000510316 5381 ntTSL 2 BASIC16.05■□□□□ 0.16
COL28A1Q2UY09 SLC8A3-203ENST00000357887 5259 ntTSL 5 BASIC16.05■□□□□ 0.16
COL28A1Q2UY09 SLC8A3-204ENST00000381269 5268 ntAPPRIS ALT1 TSL 1 (best) BASIC16.05■□□□□ 0.16
COL28A1Q2UY09 SGCB-201ENST00000381431 4431 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
COL28A1Q2UY09 POMT1-208ENST00000423007 3320 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
COL28A1Q2UY09 ISM1-201ENST00000262487 2593 ntAPPRIS P1 TSL 5 BASIC16.05■□□□□ 0.16
COL28A1Q2UY09 CCDC154-202ENST00000409671 2561 ntAPPRIS ALT2 TSL 1 (best) BASIC16.05■□□□□ 0.16
COL28A1Q2UY09 NGFR-202ENST00000504201 1840 ntTSL 2 BASIC16.05■□□□□ 0.16
COL28A1Q2UY09 ACP2-206ENST00000529444 1719 ntTSL 2 BASIC16.05■□□□□ 0.16
COL28A1Q2UY09 RGS11-202ENST00000316163 2376 ntTSL 1 (best) BASIC16.05■□□□□ 0.16
COL28A1Q2UY09 DAGLB-204ENST00000436575 2385 ntTSL 2 BASIC16.05■□□□□ 0.16
COL28A1Q2UY09 NTRK1-202ENST00000368196 2701 ntAPPRIS ALT2 TSL 1 (best) BASIC16.04■□□□□ 0.16
COL28A1Q2UY09 LINC01554-202ENST00000436592 2052 ntTSL 1 (best) BASIC16.04■□□□□ 0.16
COL28A1Q2UY09 BAGE2-202ENST00000474011 1482 ntTSL 2 BASIC16.04■□□□□ 0.16
COL28A1Q2UY09 PTPN21-208ENST00000556564 6166 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
COL28A1Q2UY09 PACS1-201ENST00000320580 4392 ntAPPRIS P2 TSL 1 (best) BASIC16.04■□□□□ 0.16
COL28A1Q2UY09 DKC1-201ENST00000369550 2577 ntAPPRIS P3 TSL 1 (best) BASIC16.04■□□□□ 0.16
COL28A1Q2UY09 SVOPL-204ENST00000436657 1420 ntTSL 1 (best) BASIC16.04■□□□□ 0.16
COL28A1Q2UY09 FER1L4-210ENST00000615531 5998 ntBASIC16.04■□□□□ 0.16
COL28A1Q2UY09 LRRC3-201ENST00000291592 5869 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
COL28A1Q2UY09 BRPF1-201ENST00000383829 4736 ntAPPRIS ALT1 TSL 1 (best) BASIC16.04■□□□□ 0.16
COL28A1Q2UY09 POLR3D-201ENST00000306433 1931 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
COL28A1Q2UY09 ZAP70-201ENST00000264972 2437 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
COL28A1Q2UY09 TRAPPC11-201ENST00000334690 4552 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
Retrieved 100 of 98,524 protein–RNA pairs in 30.4 ms