Protein–RNA interactions for Protein: Q2M3G4

SHROOM1, Protein Shroom1, humanhuman

Predicted RBP Predictions only

Length 852 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHROOM1Q2M3G4 SCOC-211ENST00000614192 1959 ntAPPRIS P2 TSL 1 (best) BASIC19.33■□□□□ 0.68
SHROOM1Q2M3G4 GGT6-203ENST00000573591 1730 ntTSL 4 BASIC19.33■□□□□ 0.68
SHROOM1Q2M3G4 GGT4P-201ENST00000623672 1708 ntBASIC19.33■□□□□ 0.68
SHROOM1Q2M3G4 IL1R1-205ENST00000410023 5143 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.68
SHROOM1Q2M3G4 CSRNP1-201ENST00000273153 3148 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.68
SHROOM1Q2M3G4 LGI4-202ENST00000392225 2891 ntTSL 5 BASIC19.33■□□□□ 0.68
SHROOM1Q2M3G4 NFE2-201ENST00000312156 1658 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.68
SHROOM1Q2M3G4 TGIF1-205ENST00000401449 1670 ntTSL 2 BASIC19.33■□□□□ 0.68
SHROOM1Q2M3G4 RTKN-203ENST00000305557 2646 ntAPPRIS P3 TSL 5 BASIC19.33■□□□□ 0.68
SHROOM1Q2M3G4 KREMEN1-203ENST00000407188 1422 ntAPPRIS ALT2 TSL 1 (best) BASIC19.33■□□□□ 0.68
SHROOM1Q2M3G4 PIP4K2A-206ENST00000545335 1436 ntTSL 2 BASIC19.33■□□□□ 0.68
SHROOM1Q2M3G4 SLFNL1-205ENST00000439569 2117 ntAPPRIS P3 TSL 2 BASIC19.33■□□□□ 0.68
SHROOM1Q2M3G4 SPDEF-201ENST00000374037 1895 ntAPPRIS P3 TSL 1 (best) BASIC19.33■□□□□ 0.68
SHROOM1Q2M3G4 NSD3-201ENST00000316985 3995 ntTSL 1 (best) BASIC19.33■□□□□ 0.68
SHROOM1Q2M3G4 CORO6-210ENST00000580212 2345 ntTSL 5 BASIC19.33■□□□□ 0.68
SHROOM1Q2M3G4 AR-207ENST00000612010 3896 ntTSL 5 BASIC19.32■□□□□ 0.68
SHROOM1Q2M3G4 PRDM5-212ENST00000515109 2259 ntTSL 1 (best) BASIC19.32■□□□□ 0.68
SHROOM1Q2M3G4 TVP23C-201ENST00000225576 1527 ntTSL 1 (best) BASIC19.32■□□□□ 0.68
SHROOM1Q2M3G4 KIF26A-202ENST00000423312 5649 ntAPPRIS P2 TSL 5 BASIC19.32■□□□□ 0.68
SHROOM1Q2M3G4 AC010478.1-202ENST00000559112 2367 ntTSL 2 BASIC19.32■□□□□ 0.68
SHROOM1Q2M3G4 ASIC2-201ENST00000225823 3443 ntTSL 1 (best) BASIC19.32■□□□□ 0.68
SHROOM1Q2M3G4 PNMA8B-202ENST00000599531 5308 ntAPPRIS P1 BASIC19.32■□□□□ 0.68
SHROOM1Q2M3G4 RETN-202ENST00000381324 249 ntTSL 1 (best) BASIC19.32■□□□□ 0.68
SHROOM1Q2M3G4 AL353597.1-201ENST00000414875 998 ntTSL 5 BASIC19.32■□□□□ 0.68
SHROOM1Q2M3G4 SNHG17-203ENST00000417578 880 ntTSL 2 BASIC19.32■□□□□ 0.68
SHROOM1Q2M3G4 FYCO1-203ENST00000438446 1072 ntTSL 5 BASIC19.32■□□□□ 0.68
SHROOM1Q2M3G4 TMEM176A-202ENST00000461345 635 ntAPPRIS ALT2 TSL 5 BASIC19.32■□□□□ 0.68
SHROOM1Q2M3G4 HLA-V-204ENST00000476601 1289 ntBASIC19.32■□□□□ 0.68
SHROOM1Q2M3G4 AC105021.1-202ENST00000570572 669 ntBASIC19.32■□□□□ 0.68
SHROOM1Q2M3G4 GTF2IRD2-205ENST00000614386 578 ntTSL 1 (best) BASIC19.32■□□□□ 0.68
SHROOM1Q2M3G4 RBP1-207ENST00000619087 516 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
SHROOM1Q2M3G4 PHF20L1-203ENST00000337920 2311 ntTSL 1 (best) BASIC19.32■□□□□ 0.68
SHROOM1Q2M3G4 STRADA-254ENST00000640999 2336 ntAPPRIS ALT1 TSL 5 BASIC19.32■□□□□ 0.68
SHROOM1Q2M3G4 ZFP1-209ENST00000570010 1457 ntAPPRIS P1 TSL 2 BASIC19.32■□□□□ 0.68
SHROOM1Q2M3G4 TTLL10-202ENST00000379289 2259 ntAPPRIS P1 TSL 2 BASIC19.32■□□□□ 0.68
SHROOM1Q2M3G4 NFASC-205ENST00000403080 2462 ntTSL 2 BASIC19.32■□□□□ 0.68
SHROOM1Q2M3G4 NOS1AP-206ENST00000530878 2894 ntAPPRIS ALT2 TSL 1 (best) BASIC19.32■□□□□ 0.68
SHROOM1Q2M3G4 ABLIM2-203ENST00000361737 3396 ntAPPRIS ALT2 TSL 2 BASIC19.32■□□□□ 0.68
SHROOM1Q2M3G4 SGSH-201ENST00000326317 2784 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
SHROOM1Q2M3G4 OCIAD1-202ENST00000381473 1594 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
SHROOM1Q2M3G4 NMD3-202ENST00000460469 3061 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
SHROOM1Q2M3G4 GTF2H4-201ENST00000259895 1735 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
SHROOM1Q2M3G4 PSMC3-201ENST00000298852 1544 ntAPPRIS P2 TSL 1 (best) BASIC19.31■□□□□ 0.68
SHROOM1Q2M3G4 NARFL-218ENST00000568545 2486 ntTSL 2 BASIC19.31■□□□□ 0.68
SHROOM1Q2M3G4 AARSD1-202ENST00000427569 1322 ntAPPRIS P1 TSL 5 BASIC19.31■□□□□ 0.68
SHROOM1Q2M3G4 AMT-206ENST00000458307 1860 ntTSL 2 BASIC19.31■□□□□ 0.68
SHROOM1Q2M3G4 NLRP6-203ENST00000534750 2936 ntAPPRIS ALT2 TSL 2 BASIC19.31■□□□□ 0.68
SHROOM1Q2M3G4 ERCC1-201ENST00000013807 1278 ntTSL 1 (best) BASIC19.31■□□□□ 0.68
SHROOM1Q2M3G4 NPM2-201ENST00000289820 1100 ntAPPRIS P2 TSL 1 (best) BASIC19.31■□□□□ 0.68
SHROOM1Q2M3G4 ASB12-201ENST00000362002 1289 ntAPPRIS P1 TSL 2 BASIC19.31■□□□□ 0.68
SHROOM1Q2M3G4 C1QA-201ENST00000374642 1143 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
SHROOM1Q2M3G4 SNRPB-201ENST00000381342 1154 ntAPPRIS ALT1 TSL 1 (best) BASIC19.31■□□□□ 0.68
SHROOM1Q2M3G4 NPM2-202ENST00000381530 925 ntTSL 1 (best) BASIC19.31■□□□□ 0.68
SHROOM1Q2M3G4 CBX7-202ENST00000401405 784 ntTSL 1 (best) BASIC19.31■□□□□ 0.68
SHROOM1Q2M3G4 EFHD1-202ENST00000409613 1156 ntTSL 1 (best) BASIC19.31■□□□□ 0.68
SHROOM1Q2M3G4 UFL1-AS1-201ENST00000430796 548 ntTSL 3 BASIC19.31■□□□□ 0.68
SHROOM1Q2M3G4 SNRPB-202ENST00000438552 1008 ntAPPRIS P4 TSL 1 (best) BASIC19.31■□□□□ 0.68
SHROOM1Q2M3G4 RPSAP31-202ENST00000445165 716 ntTSL 2 BASIC19.31■□□□□ 0.68
SHROOM1Q2M3G4 SPTLC1P1-201ENST00000447199 261 ntBASIC19.31■□□□□ 0.68
SHROOM1Q2M3G4 CHMP4A-204ENST00000530996 967 ntTSL 3 BASIC19.31■□□□□ 0.68
SHROOM1Q2M3G4 PPP1R14B-203ENST00000542235 920 ntTSL 1 (best) BASIC19.31■□□□□ 0.68
SHROOM1Q2M3G4 ARL6IP1-202ENST00000546206 1107 ntTSL 2 BASIC19.31■□□□□ 0.68
SHROOM1Q2M3G4 AC005225.4-201ENST00000557330 545 ntBASIC19.31■□□□□ 0.68
SHROOM1Q2M3G4 AC040162.1-202ENST00000573493 573 ntAPPRIS P1 TSL 3 BASIC19.31■□□□□ 0.68
SHROOM1Q2M3G4 ARMC7-205ENST00000584947 445 ntTSL 3 BASIC19.31■□□□□ 0.68
SHROOM1Q2M3G4 RPS15-212ENST00000593052 629 ntTSL 2 BASIC19.31■□□□□ 0.68
SHROOM1Q2M3G4 MRPL34-202ENST00000594999 555 ntAPPRIS P2 TSL 2 BASIC19.31■□□□□ 0.68
SHROOM1Q2M3G4 LCN8-205ENST00000612714 638 ntAPPRIS ALT2 TSL 1 (best) BASIC19.31■□□□□ 0.68
SHROOM1Q2M3G4 MMP9-201ENST00000372330 2336 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
SHROOM1Q2M3G4 MEI1-215ENST00000540833 2326 ntTSL 5 BASIC19.31■□□□□ 0.68
SHROOM1Q2M3G4 WDR45-201ENST00000322995 1444 ntTSL 5 BASIC19.31■□□□□ 0.68
SHROOM1Q2M3G4 ALDH3A1-205ENST00000444455 1771 ntAPPRIS P1 TSL 5 BASIC19.31■□□□□ 0.68
SHROOM1Q2M3G4 KLHDC3-202ENST00000326974 1909 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
SHROOM1Q2M3G4 UBALD1-205ENST00000590891 2641 ntBASIC19.31■□□□□ 0.68
SHROOM1Q2M3G4 NRXN1-208ENST00000405472 5724 ntAPPRIS ALT2 TSL 5 BASIC19.31■□□□□ 0.68
SHROOM1Q2M3G4 LYSMD4-210ENST00000545021 2431 ntTSL 4 BASIC19.31■□□□□ 0.68
SHROOM1Q2M3G4 RNF157-202ENST00000319945 2937 ntAPPRIS ALT2 TSL 2 BASIC19.31■□□□□ 0.68
SHROOM1Q2M3G4 AZI2-205ENST00000420543 1366 ntTSL 3 BASIC19.31■□□□□ 0.68
SHROOM1Q2M3G4 LYPLAL1-202ENST00000366928 1898 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
SHROOM1Q2M3G4 ADCYAP1R1-203ENST00000409363 1889 ntAPPRIS ALT2 TSL 1 (best) BASIC19.31■□□□□ 0.68
SHROOM1Q2M3G4 DCBLD2-201ENST00000326840 6122 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
SHROOM1Q2M3G4 PHKG2-201ENST00000328273 1536 ntAPPRIS ALT1 TSL 5 BASIC19.3■□□□□ 0.68
SHROOM1Q2M3G4 CLPTM1L-216ENST00000630539 2032 ntTSL 5 BASIC19.3■□□□□ 0.68
SHROOM1Q2M3G4 TRIM11-202ENST00000366699 2511 ntTSL 2 BASIC19.3■□□□□ 0.68
SHROOM1Q2M3G4 WDTC1-201ENST00000319394 4819 ntAPPRIS ALT1 TSL 1 (best) BASIC19.3■□□□□ 0.68
SHROOM1Q2M3G4 RAB1A-204ENST00000409892 2254 ntTSL 2 BASIC19.3■□□□□ 0.68
SHROOM1Q2M3G4 MTA1-207ENST00000435036 2888 ntTSL 5 BASIC19.3■□□□□ 0.68
SHROOM1Q2M3G4 PAGE5-201ENST00000289619 741 ntAPPRIS P3 TSL 1 (best) BASIC19.3■□□□□ 0.68
SHROOM1Q2M3G4 ADM2-201ENST00000395737 535 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
SHROOM1Q2M3G4 AL080243.2-201ENST00000418783 582 ntBASIC19.3■□□□□ 0.68
SHROOM1Q2M3G4 AC093724.1-201ENST00000448659 1027 ntBASIC19.3■□□□□ 0.68
SHROOM1Q2M3G4 AC098859.1-201ENST00000502915 1238 ntBASIC19.3■□□□□ 0.68
SHROOM1Q2M3G4 AC103957.2-201ENST00000521218 510 ntTSL 2 BASIC19.3■□□□□ 0.68
SHROOM1Q2M3G4 AC084125.2-203ENST00000532766 821 ntTSL 3 BASIC19.3■□□□□ 0.68
SHROOM1Q2M3G4 LITAF-210ENST00000571976 548 ntTSL 2 BASIC19.3■□□□□ 0.68
SHROOM1Q2M3G4 LITAF-214ENST00000574703 486 ntTSL 2 BASIC19.3■□□□□ 0.68
SHROOM1Q2M3G4 AC006116.8-201ENST00000587004 987 ntTSL 2 BASIC19.3■□□□□ 0.68
SHROOM1Q2M3G4 ELOF1-205ENST00000589171 743 ntTSL 3 BASIC19.3■□□□□ 0.68
SHROOM1Q2M3G4 AC004840.1-201ENST00000636359 365 ntBASIC19.3■□□□□ 0.68
SHROOM1Q2M3G4 GFY-202ENST00000610896 1557 ntAPPRIS P1 TSL 2 BASIC19.3■□□□□ 0.68
Retrieved 100 of 98,524 protein–RNA pairs in 25 ms