Protein–RNA interactions for Protein: P55317

FOXA1, Hepatocyte nuclear factor 3-alpha, humanhuman

Predictions only

Length 472 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
FOXA1P55317 SNCAIP-202ENST00000261368 3745 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
FOXA1P55317 ATP5S-201ENST00000245448 1671 ntTSL 1 (best) BASIC16.18■□□□□ 0.18
FOXA1P55317 DYRK3-201ENST00000367106 2329 ntTSL 1 (best) BASIC16.18■□□□□ 0.18
FOXA1P55317 ZNF423-206ENST00000563137 4911 ntAPPRIS ALT2 TSL 5 BASIC16.18■□□□□ 0.18
FOXA1P55317 DIXDC1-208ENST00000615255 4825 ntTSL 1 (best) BASIC16.18■□□□□ 0.18
FOXA1P55317 CYP11A1-201ENST00000268053 1934 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
FOXA1P55317 HPCAL1-207ENST00000620771 1941 ntAPPRIS P1 TSL 2 BASIC16.18■□□□□ 0.18
FOXA1P55317 LRRC20-206ENST00000395011 2903 ntTSL 4 BASIC16.18■□□□□ 0.18
FOXA1P55317 IER2-203ENST00000588173 2934 ntAPPRIS P1 BASIC16.18■□□□□ 0.18
FOXA1P55317 CENPX-201ENST00000306704 751 ntTSL 1 (best) BASIC16.18■□□□□ 0.18
FOXA1P55317 PLA2G16-203ENST00000415826 1099 ntAPPRIS P1 TSL 2 BASIC16.18■□□□□ 0.18
FOXA1P55317 AL109741.1-201ENST00000432195 403 ntTSL 2 BASIC16.18■□□□□ 0.18
FOXA1P55317 TSTD3-201ENST00000452647 962 ntAPPRIS P2 TSL 2 BASIC16.18■□□□□ 0.18
FOXA1P55317 AC004080.2-201ENST00000523331 556 ntTSL 4 BASIC16.18■□□□□ 0.18
FOXA1P55317 LMX1B-203ENST00000526117 1195 ntTSL 1 (best) BASIC16.18■□□□□ 0.18
FOXA1P55317 SMAD3-210ENST00000559092 584 ntTSL 4 BASIC16.18■□□□□ 0.18
FOXA1P55317 PRR29-207ENST00000580752 458 ntTSL 3 BASIC16.18■□□□□ 0.18
FOXA1P55317 ARMC7-204ENST00000582136 1204 ntTSL 2 BASIC16.18■□□□□ 0.18
FOXA1P55317 TBCB-205ENST00000585746 875 ntTSL 3 BASIC16.18■□□□□ 0.18
FOXA1P55317 SIGLEC29P-201ENST00000599873 1114 ntBASIC16.18■□□□□ 0.18
FOXA1P55317 SBDS-205ENST00000617799 953 ntAPPRIS ALT1 TSL 5 BASIC16.18■□□□□ 0.18
FOXA1P55317 CR381653.1-203ENST00000625153 577 ntTSL 5 BASIC16.18■□□□□ 0.18
FOXA1P55317 PLA2G16-206ENST00000639271 957 ntTSL 5 BASIC16.18■□□□□ 0.18
FOXA1P55317 AL805961.1-202ENST00000641562 540 ntBASIC16.18■□□□□ 0.18
FOXA1P55317 COL4A2-201ENST00000360467 6281 ntAPPRIS P1 TSL 5 BASIC16.18■□□□□ 0.18
FOXA1P55317 CDKN2B-AS1-208ENST00000580576 2175 ntTSL 1 (best) BASIC16.18■□□□□ 0.18
FOXA1P55317 GPER1-202ENST00000397088 2639 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
FOXA1P55317 FGF11-201ENST00000293829 3063 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
FOXA1P55317 TIMM44-201ENST00000270538 2075 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
FOXA1P55317 SLC25A48-203ENST00000425402 2062 ntTSL 5 BASIC16.18■□□□□ 0.18
FOXA1P55317 ZNF764-202ENST00000395091 2970 ntAPPRIS ALT1 TSL 2 BASIC16.18■□□□□ 0.18
FOXA1P55317 ASPM-201ENST00000294732 6132 ntTSL 1 (best) BASIC16.18■□□□□ 0.18
FOXA1P55317 HTD2-201ENST00000461393 1508 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
FOXA1P55317 DHX33-201ENST00000225296 5618 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
FOXA1P55317 MAP4K1-208ENST00000589130 2654 ntTSL 5 BASIC16.18■□□□□ 0.18
FOXA1P55317 ACTRT2-201ENST00000378404 1421 ntAPPRIS P1 BASIC16.18■□□□□ 0.18
FOXA1P55317 LATS1-202ENST00000392273 2567 ntTSL 1 (best) BASIC16.18■□□□□ 0.18
FOXA1P55317 SMARCA4-203ENST00000429416 5691 ntTSL 2 BASIC16.18■□□□□ 0.18
FOXA1P55317 RNF157-202ENST00000319945 2937 ntAPPRIS ALT2 TSL 2 BASIC16.18■□□□□ 0.18
FOXA1P55317 TYSND1-201ENST00000287078 3644 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
FOXA1P55317 GJA8-201ENST00000369235 1302 ntAPPRIS P1 BASIC16.18■□□□□ 0.18
FOXA1P55317 PACS1-209ENST00000529757 1688 ntAPPRIS ALT2 TSL 1 (best) BASIC16.18■□□□□ 0.18
FOXA1P55317 LINC00894-202ENST00000425602 1597 ntTSL 2 BASIC16.17■□□□□ 0.18
FOXA1P55317 SHMT2-232ENST00000557487 1918 ntTSL 1 (best) BASIC16.17■□□□□ 0.18
FOXA1P55317 PTK6-202ENST00000542869 2931 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
FOXA1P55317 LILRA6-201ENST00000245621 1395 ntAPPRIS ALT2 TSL 5 BASIC16.17■□□□□ 0.18
FOXA1P55317 ASL-205ENST00000395332 1622 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
FOXA1P55317 CASK-203ENST00000378163 4411 ntAPPRIS ALT1 TSL 5 BASIC16.17■□□□□ 0.18
FOXA1P55317 FAM86B2-202ENST00000309608 806 ntTSL 3 BASIC16.17■□□□□ 0.18
FOXA1P55317 ODF3B-202ENST00000401779 869 ntTSL 1 (best) BASIC16.17■□□□□ 0.18
FOXA1P55317 ODF3B-203ENST00000403326 643 ntTSL 3 BASIC16.17■□□□□ 0.18
FOXA1P55317 AQP12A-202ENST00000429564 1110 ntAPPRIS P5 TSL 5 BASIC16.17■□□□□ 0.18
FOXA1P55317 NDUFA6-AS1-203ENST00000439129 2950 ntTSL 5 BASIC16.17■□□□□ 0.18
FOXA1P55317 AL611929.1-201ENST00000457340 449 ntTSL 3 BASIC16.17■□□□□ 0.18
FOXA1P55317 C9orf147-204ENST00000463223 863 ntTSL 3 BASIC16.17■□□□□ 0.18
FOXA1P55317 PLPP5-214ENST00000531823 875 ntTSL 3 BASIC16.17■□□□□ 0.18
FOXA1P55317 AP1S2-206ENST00000545766 576 ntTSL 1 (best) BASIC16.17■□□□□ 0.18
FOXA1P55317 AL603832.2-201ENST00000566195 2125 ntBASIC16.17■□□□□ 0.18
FOXA1P55317 PRELID1P1-202ENST00000567272 903 ntBASIC16.17■□□□□ 0.18
FOXA1P55317 FAM220A-205ENST00000578372 207 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
FOXA1P55317 IFT20-215ENST00000585313 852 ntAPPRIS P4 TSL 3 BASIC16.17■□□□□ 0.18
FOXA1P55317 CYP2A7P1-201ENST00000595391 815 ntBASIC16.17■□□□□ 0.18
FOXA1P55317 GRTP1-205ENST00000620217 1073 ntTSL 2 BASIC16.17■□□□□ 0.18
FOXA1P55317 AC012313.10-201ENST00000623509 926 ntBASIC16.17■□□□□ 0.18
FOXA1P55317 AC244517.11-201ENST00000624192 573 ntTSL 5 BASIC16.17■□□□□ 0.18
FOXA1P55317 UPK3B-202ENST00000334348 2373 ntAPPRIS ALT2 TSL 2 BASIC16.17■□□□□ 0.18
FOXA1P55317 DENND3-201ENST00000262585 5438 ntAPPRIS P2 TSL 5 BASIC16.17■□□□□ 0.18
FOXA1P55317 HLA-F-218ENST00000376861 1544 ntAPPRIS ALT2 BASIC16.17■□□□□ 0.18
FOXA1P55317 SASH3-201ENST00000356892 2626 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
FOXA1P55317 SYBU-231ENST00000533065 2645 ntAPPRIS ALT2 TSL 2 BASIC16.17■□□□□ 0.18
FOXA1P55317 RBM4-204ENST00000408993 1763 ntAPPRIS P1 TSL 5 BASIC16.17■□□□□ 0.18
FOXA1P55317 CHID1-201ENST00000323578 3374 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
FOXA1P55317 ERVK13-1-203ENST00000564340 1449 ntTSL 1 (best) BASIC16.17■□□□□ 0.18
FOXA1P55317 KLHL36-204ENST00000564996 2173 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
FOXA1P55317 GATA3-201ENST00000346208 2654 ntAPPRIS P3 TSL 1 (best) BASIC16.17■□□□□ 0.18
FOXA1P55317 DDX5-201ENST00000225792 2554 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
FOXA1P55317 RGS3-206ENST00000374136 2092 ntTSL 1 (best) BASIC16.17■□□□□ 0.18
FOXA1P55317 RALGPS1-203ENST00000373434 2466 ntTSL 1 (best) BASIC16.17■□□□□ 0.18
FOXA1P55317 CTNNBIP1-203ENST00000377263 3000 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
FOXA1P55317 GEM-202ENST00000396194 2103 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
FOXA1P55317 ARHGEF28-214ENST00000545377 6351 ntAPPRIS P3 TSL 5 BASIC16.16■□□□□ 0.18
FOXA1P55317 GALNT10-203ENST00000425427 4344 ntTSL 2 BASIC16.16■□□□□ 0.18
FOXA1P55317 ADORA1-204ENST00000367236 3407 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
FOXA1P55317 ARFGAP1-210ENST00000519273 3176 ntTSL 2 BASIC16.16■□□□□ 0.18
FOXA1P55317 AC006449.6-201ENST00000612330 2296 ntBASIC16.16■□□□□ 0.18
FOXA1P55317 HYMAI-201ENST00000635591 3347 ntBASIC16.16■□□□□ 0.18
FOXA1P55317 TTYH2-206ENST00000529107 2015 ntTSL 2 BASIC16.16■□□□□ 0.18
FOXA1P55317 MAGEA2-208ENST00000623438 2009 ntAPPRIS P1 TSL 2 BASIC16.16■□□□□ 0.18
FOXA1P55317 RGS11-203ENST00000359740 1371 ntTSL 1 (best) BASIC16.16■□□□□ 0.18
FOXA1P55317 SEPT9-211ENST00000585930 1387 ntTSL 2 BASIC16.16■□□□□ 0.18
FOXA1P55317 NPR3-203ENST00000415167 1753 ntAPPRIS P3 TSL 1 (best) BASIC16.16■□□□□ 0.18
FOXA1P55317 CLIP4-201ENST00000320081 4293 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
FOXA1P55317 AC026412.1-203ENST00000507841 2338 ntTSL 1 (best) BASIC16.16■□□□□ 0.18
FOXA1P55317 SBNO2-204ENST00000587024 4861 ntAPPRIS ALT2 TSL 2 BASIC16.16■□□□□ 0.18
FOXA1P55317 PLPPR5-201ENST00000263177 3288 ntAPPRIS P4 TSL 1 (best) BASIC16.16■□□□□ 0.18
FOXA1P55317 DPM3-201ENST00000341298 486 ntAPPRIS P1 TSL 2 BASIC16.16■□□□□ 0.18
FOXA1P55317 SCARNA2-201ENST00000458748 420 ntBASIC16.16■□□□□ 0.18
FOXA1P55317 SELENOS-203ENST00000526049 1188 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
FOXA1P55317 LINC00596-201ENST00000559615 937 ntTSL 5 BASIC16.16■□□□□ 0.18
FOXA1P55317 AC091167.2-201ENST00000579581 588 ntBASIC16.16■□□□□ 0.18
Retrieved 100 of 98,524 protein–RNA pairs in 53.6 ms