Protein–RNA interactions for Protein: P51956

NEK3, Serine/threonine-protein kinase Nek3, humanhuman

Predictions only

Length 506 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NEK3P51956 SLC25A45-202ENST00000398802 2286 ntAPPRIS P1 TSL 5 BASIC17.24■□□□□ 0.35
NEK3P51956 FLJ31104-201ENST00000500093 2289 ntTSL 1 (best) BASIC17.24■□□□□ 0.35
NEK3P51956 WDR13-202ENST00000376729 5469 ntAPPRIS P1 TSL 5 BASIC17.24■□□□□ 0.35
NEK3P51956 XXYLT1-205ENST00000437101 2149 ntTSL 2 BASIC17.24■□□□□ 0.35
NEK3P51956 CBX8-201ENST00000269385 3791 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
NEK3P51956 COL23A1-202ENST00000407622 2329 ntAPPRIS ALT2 TSL 5 BASIC17.24■□□□□ 0.35
NEK3P51956 TCP1-203ENST00000420894 1671 ntTSL 5 BASIC17.24■□□□□ 0.35
NEK3P51956 RBBP7-204ENST00000404022 1904 ntTSL 5 BASIC17.24■□□□□ 0.35
NEK3P51956 FBXO24-206ENST00000468962 1901 ntTSL 2 BASIC17.24■□□□□ 0.35
NEK3P51956 CDKN1A-201ENST00000244741 2180 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
NEK3P51956 CYP4F22-202ENST00000601005 2445 ntAPPRIS P1 TSL 5 BASIC17.24■□□□□ 0.35
NEK3P51956 KRTCAP2-201ENST00000295682 552 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
NEK3P51956 TRA2B-202ENST00000342294 288 ntTSL 1 (best) BASIC17.24■□□□□ 0.35
NEK3P51956 DNAJC4-203ENST00000355040 759 ntTSL 1 (best) BASIC17.24■□□□□ 0.35
NEK3P51956 MFSD13A-202ENST00000369931 823 ntTSL 1 (best) BASIC17.24■□□□□ 0.35
NEK3P51956 RFXANK-202ENST00000392324 1059 ntTSL 1 (best) BASIC17.24■□□□□ 0.35
NEK3P51956 ATP5G3-202ENST00000392541 842 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
NEK3P51956 IGLL3P-201ENST00000412472 434 ntBASIC17.24■□□□□ 0.35
NEK3P51956 SNHG11-205ENST00000421599 1046 ntTSL 3 BASIC17.24■□□□□ 0.35
NEK3P51956 LINC00237-202ENST00000455890 1220 ntTSL 2 BASIC17.24■□□□□ 0.35
NEK3P51956 LINC00596-201ENST00000559615 937 ntTSL 5 BASIC17.24■□□□□ 0.35
NEK3P51956 AC104758.1-202ENST00000568184 602 ntTSL 3 BASIC17.24■□□□□ 0.35
NEK3P51956 OR7E47P-204ENST00000575924 449 ntBASIC17.24■□□□□ 0.35
NEK3P51956 AC139530.3-201ENST00000620344 690 ntBASIC17.24■□□□□ 0.35
NEK3P51956 ZFP3-201ENST00000318833 5206 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
NEK3P51956 CARS-203ENST00000397111 2685 ntTSL 1 (best) BASIC17.24■□□□□ 0.35
NEK3P51956 SYBU-209ENST00000446070 2919 ntAPPRIS P4 TSL 1 (best) BASIC17.24■□□□□ 0.35
NEK3P51956 PDE1B-201ENST00000243052 3444 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
NEK3P51956 TBXAS1-202ENST00000411653 1792 ntTSL 1 (best) BASIC17.24■□□□□ 0.35
NEK3P51956 FMO5-208ENST00000578284 1784 ntTSL 5 BASIC17.24■□□□□ 0.35
NEK3P51956 DIMT1-201ENST00000199320 2859 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
NEK3P51956 MARCH1-203ENST00000503008 5877 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
NEK3P51956 AC002310.6-201ENST00000624451 1377 ntBASIC17.24■□□□□ 0.35
NEK3P51956 TRIM11-201ENST00000284551 2715 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
NEK3P51956 KCNA5-201ENST00000252321 2800 ntAPPRIS P1 BASIC17.24■□□□□ 0.35
NEK3P51956 RAB3IP-202ENST00000362025 2055 ntTSL 1 (best) BASIC17.24■□□□□ 0.35
NEK3P51956 SBNO2-204ENST00000587024 4861 ntAPPRIS ALT2 TSL 2 BASIC17.24■□□□□ 0.35
NEK3P51956 RPL3L-201ENST00000268661 2182 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
NEK3P51956 TMC3-AS1-203ENST00000559781 2195 ntTSL 3 BASIC17.23■□□□□ 0.35
NEK3P51956 AC068418.2-201ENST00000577309 3703 ntBASIC17.23■□□□□ 0.35
NEK3P51956 SCRIB-203ENST00000377533 5108 ntAPPRIS ALT2 TSL 1 (best) BASIC17.23■□□□□ 0.35
NEK3P51956 MGEA5-203ENST00000370094 3314 ntTSL 1 (best) BASIC17.23■□□□□ 0.35
NEK3P51956 PKLR-202ENST00000392414 2479 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
NEK3P51956 SGK3-206ENST00000520976 2483 ntTSL 2 BASIC17.23■□□□□ 0.35
NEK3P51956 AL109955.1-201ENST00000417346 1540 ntTSL 2 BASIC17.23■□□□□ 0.35
NEK3P51956 TCP11L2-201ENST00000299045 2219 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
NEK3P51956 AC110813.1-201ENST00000507934 2209 ntTSL 2 BASIC17.23■□□□□ 0.35
NEK3P51956 PKN3-201ENST00000291906 3375 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
NEK3P51956 ZSWIM8-213ENST00000603114 5919 ntTSL 5 BASIC17.23■□□□□ 0.35
NEK3P51956 SMCHD1-201ENST00000320876 8821 ntAPPRIS P1 TSL 5 BASIC17.23■□□□□ 0.35
NEK3P51956 GABBR1-205ENST00000377034 4527 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
NEK3P51956 HLA-DMA-201ENST00000374843 1123 ntAPPRIS P1 BASIC17.23■□□□□ 0.35
NEK3P51956 AL645941.2-201ENST00000429234 612 ntAPPRIS P1 TSL 2 BASIC17.23■□□□□ 0.35
NEK3P51956 PAWRP1-201ENST00000451083 565 ntBASIC17.23■□□□□ 0.35
NEK3P51956 MAL2-202ENST00000531508 892 ntTSL 3 BASIC17.23■□□□□ 0.35
NEK3P51956 FGFR1OP2-206ENST00000546072 956 ntTSL 1 (best) BASIC17.23■□□□□ 0.35
NEK3P51956 KRT73-AS1-202ENST00000551089 563 ntTSL 4 BASIC17.23■□□□□ 0.35
NEK3P51956 AC018845.2-201ENST00000568326 409 ntBASIC17.23■□□□□ 0.35
NEK3P51956 ELOF1-204ENST00000587806 1172 ntTSL 2 BASIC17.23■□□□□ 0.35
NEK3P51956 GIPC1-213ENST00000591349 1068 ntTSL 2 BASIC17.23■□□□□ 0.35
NEK3P51956 OR5AH1P-202ENST00000597822 431 ntTSL 3 BASIC17.23■□□□□ 0.35
NEK3P51956 SLC9A3-AS1-204ENST00000606288 791 ntTSL 2 BASIC17.23■□□□□ 0.35
NEK3P51956 TNFRSF13B-201ENST00000261652 1357 ntAPPRIS P2 TSL 1 (best) BASIC17.23■□□□□ 0.35
NEK3P51956 MST1L-201ENST00000442552 2185 ntBASIC17.23■□□□□ 0.35
NEK3P51956 RUNX2-201ENST00000359524 5390 ntTSL 1 (best) BASIC17.23■□□□□ 0.35
NEK3P51956 EDN3-202ENST00000337938 2636 ntAPPRIS P4 TSL 1 (best) BASIC17.23■□□□□ 0.35
NEK3P51956 CHFR-203ENST00000432561 2648 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
NEK3P51956 OR6D1P-203ENST00000641209 4860 ntBASIC17.23■□□□□ 0.35
NEK3P51956 SELENBP1-204ENST00000426705 1928 ntTSL 2 BASIC17.23■□□□□ 0.35
NEK3P51956 AC092143.3-201ENST00000565150 1900 ntTSL 5 BASIC17.23■□□□□ 0.35
NEK3P51956 PLEKHB1-202ENST00000354190 2380 ntAPPRIS P4 TSL 1 (best) BASIC17.23■□□□□ 0.35
NEK3P51956 ADD1-201ENST00000264758 4045 ntAPPRIS P3 TSL 5 BASIC17.23■□□□□ 0.35
NEK3P51956 ADAM15-228ENST00000531455 2678 ntAPPRIS ALT2 TSL 2 BASIC17.23■□□□□ 0.35
NEK3P51956 TRA2A-202ENST00000392502 2229 ntAPPRIS ALT2 TSL 2 BASIC17.23■□□□□ 0.35
NEK3P51956 ANXA6-211ENST00000521512 1793 ntTSL 5 BASIC17.23■□□□□ 0.35
NEK3P51956 C21orf58-201ENST00000291691 2975 ntAPPRIS P3 TSL 2 BASIC17.22■□□□□ 0.35
NEK3P51956 NR4A1-204ENST00000394825 2528 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
NEK3P51956 FRS2-206ENST00000549921 1952 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
NEK3P51956 RUNDC3B-203ENST00000394654 2064 ntAPPRIS P4 TSL 2 BASIC17.22■□□□□ 0.35
NEK3P51956 KHNYN-202ENST00000553935 3359 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
NEK3P51956 PICALM-219ENST00000532317 3474 ntTSL 1 (best) BASIC17.22■□□□□ 0.35
NEK3P51956 FGFBP2-201ENST00000259989 1168 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
NEK3P51956 LCK-202ENST00000336890 2117 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
NEK3P51956 TSTD1-203ENST00000368024 457 ntTSL 2 BASIC17.22■□□□□ 0.35
NEK3P51956 UPF3AP3-201ENST00000420996 769 ntBASIC17.22■□□□□ 0.35
NEK3P51956 AL049612.1-201ENST00000427017 694 ntTSL 5 BASIC17.22■□□□□ 0.35
NEK3P51956 EEF1D-223ENST00000528610 923 ntAPPRIS ALT2 TSL 1 (best) BASIC17.22■□□□□ 0.35
NEK3P51956 MRVI1-AS1-203ENST00000529979 784 ntTSL 3 BASIC17.22■□□□□ 0.35
NEK3P51956 POLD4-207ENST00000531239 584 ntTSL 2 BASIC17.22■□□□□ 0.35
NEK3P51956 HOXD8-204ENST00000544999 1235 ntAPPRIS ALT2 TSL 5 BASIC17.22■□□□□ 0.35
NEK3P51956 AC096734.2-201ENST00000562054 433 ntBASIC17.22■□□□□ 0.35
NEK3P51956 AC092115.3-201ENST00000575838 592 ntTSL 5 BASIC17.22■□□□□ 0.35
NEK3P51956 AC010327.4-202ENST00000591484 748 ntBASIC17.22■□□□□ 0.35
NEK3P51956 HOTTIP_1.1-201ENST00000620415 57 ntBASIC17.22■□□□□ 0.35
NEK3P51956 AC010507.1-201ENST00000633895 436 ntBASIC17.22■□□□□ 0.35
NEK3P51956 TRIM7-204ENST00000393319 2320 ntTSL 1 (best) BASIC17.22■□□□□ 0.35
NEK3P51956 LRFN2-201ENST00000338305 3270 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
NEK3P51956 CLN3-203ENST00000357806 1469 ntTSL 1 (best) BASIC17.22■□□□□ 0.35
NEK3P51956 TMTC4-203ENST00000376234 3483 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
NEK3P51956 PELI3-209ENST00000618547 2508 ntTSL 2 BASIC17.22■□□□□ 0.35
Retrieved 100 of 98,524 protein–RNA pairs in 97.8 ms