Protein–RNA interactions for Protein: O96005

CLPTM1, Cleft lip and palate transmembrane protein 1, humanhuman

Predictions only

Length 669 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLPTM1O96005 SMIM29-209ENST00000636500 1186 ntTSL 1 (best) BASIC15.84■□□□□ 0.13
CLPTM1O96005 PON2-201ENST00000222572 1745 ntAPPRIS P1 TSL 1 (best) BASIC15.84■□□□□ 0.13
CLPTM1O96005 ISYNA1-202ENST00000457269 1703 ntTSL 2 BASIC15.84■□□□□ 0.13
CLPTM1O96005 AC104581.4-201ENST00000623126 3052 ntBASIC15.84■□□□□ 0.13
CLPTM1O96005 LINC01565-201ENST00000356020 2697 ntTSL 2 BASIC15.84■□□□□ 0.13
CLPTM1O96005 GAS2L2-201ENST00000604063 2661 ntAPPRIS ALT2 TSL 5 BASIC15.84■□□□□ 0.13
CLPTM1O96005 SYN1-202ENST00000340666 3172 ntAPPRIS ALT2 TSL 1 (best) BASIC15.84■□□□□ 0.13
CLPTM1O96005 AC114490.1-201ENST00000417456 3163 ntTSL 2 BASIC15.84■□□□□ 0.13
CLPTM1O96005 KCNT1-211ENST00000491806 3678 ntAPPRIS ALT2 TSL 5 BASIC15.84■□□□□ 0.13
CLPTM1O96005 LMAN1-201ENST00000251047 5521 ntAPPRIS P1 TSL 1 (best) BASIC15.84■□□□□ 0.13
CLPTM1O96005 PAPOLA-223ENST00000557320 3264 ntTSL 1 (best) BASIC15.84■□□□□ 0.13
CLPTM1O96005 AL391256.1-201ENST00000443260 1855 ntBASIC15.84■□□□□ 0.13
CLPTM1O96005 KCNT1-206ENST00000486577 3760 ntAPPRIS ALT2 TSL 5 BASIC15.84■□□□□ 0.13
CLPTM1O96005 CTNND2-214ENST00000511377 4336 ntTSL 1 (best) BASIC15.84■□□□□ 0.13
CLPTM1O96005 AL928970.1-201ENST00000422679 2923 ntTSL 5 BASIC15.84■□□□□ 0.13
CLPTM1O96005 PNCK-203ENST00000370145 1455 ntTSL 2 BASIC15.84■□□□□ 0.13
CLPTM1O96005 HOXB6-203ENST00000484302 1960 ntAPPRIS P1 TSL 2 BASIC15.84■□□□□ 0.13
CLPTM1O96005 POFUT2-214ENST00000615172 2472 ntTSL 1 (best) BASIC15.84■□□□□ 0.13
CLPTM1O96005 PCYOX1-201ENST00000264441 2959 ntTSL 5 BASIC15.84■□□□□ 0.13
CLPTM1O96005 SPOP-201ENST00000347630 2965 ntAPPRIS P1 TSL 5 BASIC15.84■□□□□ 0.13
CLPTM1O96005 CHFR-204ENST00000443047 2990 ntTSL 2 BASIC15.84■□□□□ 0.13
CLPTM1O96005 APOPT1-201ENST00000409074 2523 ntAPPRIS P1 TSL 1 (best) BASIC15.84■□□□□ 0.13
CLPTM1O96005 AL139300.1-201ENST00000472726 2505 ntAPPRIS P1 TSL 2 BASIC15.84■□□□□ 0.13
CLPTM1O96005 TUBB2B-201ENST00000259818 2020 ntAPPRIS P1 TSL 1 (best) BASIC15.84■□□□□ 0.13
CLPTM1O96005 FAM3A-204ENST00000369643 1521 ntAPPRIS P1 TSL 2 BASIC15.84■□□□□ 0.13
CLPTM1O96005 HSPH1-201ENST00000320027 5191 ntAPPRIS P1 TSL 1 (best) BASIC15.83■□□□□ 0.13
CLPTM1O96005 PPM1B-204ENST00000378551 3877 ntAPPRIS ALT1 TSL 1 (best) BASIC15.83■□□□□ 0.13
CLPTM1O96005 STAT5A-211ENST00000590949 3318 ntAPPRIS P1 TSL 1 (best) BASIC15.83■□□□□ 0.13
CLPTM1O96005 ZMIZ2-202ENST00000309315 5144 ntAPPRIS P4 TSL 2 BASIC15.83■□□□□ 0.13
CLPTM1O96005 ADM5-201ENST00000420022 1718 ntAPPRIS P1 TSL 1 (best) BASIC15.83■□□□□ 0.13
CLPTM1O96005 TSPAN14-210ENST00000616406 2436 ntTSL 2 BASIC15.83■□□□□ 0.12
CLPTM1O96005 CHTOP-202ENST00000368687 1094 ntTSL 1 (best) BASIC15.83■□□□□ 0.12
CLPTM1O96005 AL031133.1-201ENST00000406807 723 ntBASIC15.83■□□□□ 0.12
CLPTM1O96005 AL671277.2-201ENST00000458060 996 ntBASIC15.83■□□□□ 0.12
CLPTM1O96005 NT5C-211ENST00000582170 653 ntTSL 3 BASIC15.83■□□□□ 0.12
CLPTM1O96005 NDUFAB1-201ENST00000007516 717 ntAPPRIS P1 TSL 1 (best) BASIC15.83■□□□□ 0.12
CLPTM1O96005 C2orf81-202ENST00000612891 1902 ntAPPRIS ALT2 TSL 5 BASIC15.83■□□□□ 0.12
CLPTM1O96005 GABRB2-202ENST00000353437 1963 ntAPPRIS P1 TSL 1 (best) BASIC15.83■□□□□ 0.12
CLPTM1O96005 HNF1B-207ENST00000621123 1971 ntTSL 1 (best) BASIC15.83■□□□□ 0.12
CLPTM1O96005 ATG13-216ENST00000530500 2030 ntTSL 2 BASIC15.83■□□□□ 0.12
CLPTM1O96005 NR2E3-204ENST00000621736 2032 ntTSL 2 BASIC15.83■□□□□ 0.12
CLPTM1O96005 SYAP1-201ENST00000380155 6129 ntAPPRIS P1 TSL 1 (best) BASIC15.83■□□□□ 0.12
CLPTM1O96005 FAM50A-202ENST00000393600 1352 ntAPPRIS P1 TSL 1 (best) BASIC15.83■□□□□ 0.12
CLPTM1O96005 JPH4-205ENST00000622501 3489 ntAPPRIS ALT1 TSL 5 BASIC15.83■□□□□ 0.12
CLPTM1O96005 ING5-213ENST00000636051 4199 ntTSL 5 BASIC15.83■□□□□ 0.12
CLPTM1O96005 CICP4-201ENST00000447359 2812 ntBASIC15.83■□□□□ 0.12
CLPTM1O96005 RNFT2-203ENST00000392549 2896 ntAPPRIS P1 TSL 5 BASIC15.83■□□□□ 0.12
CLPTM1O96005 PLCG1-AS1-201ENST00000454626 1462 ntTSL 1 (best) BASIC15.83■□□□□ 0.12
CLPTM1O96005 SOGA3-201ENST00000465909 3756 ntTSL 5 BASIC15.83■□□□□ 0.12
CLPTM1O96005 PLTP-202ENST00000372420 1530 ntTSL 2 BASIC15.83■□□□□ 0.12
CLPTM1O96005 SNX31-201ENST00000311812 2457 ntAPPRIS P1 TSL 2 BASIC15.83■□□□□ 0.12
CLPTM1O96005 TGIF1-205ENST00000401449 1670 ntTSL 2 BASIC15.83■□□□□ 0.12
CLPTM1O96005 MAPKAP1-201ENST00000265960 3395 ntAPPRIS P1 TSL 1 (best) BASIC15.83■□□□□ 0.12
CLPTM1O96005 TNXB-208ENST00000611016 6083 ntTSL 5 BASIC15.82■□□□□ 0.12
CLPTM1O96005 GLUL-202ENST00000331872 4364 ntAPPRIS P1 TSL 1 (best) BASIC15.82■□□□□ 0.12
CLPTM1O96005 MAGEA8-201ENST00000286482 1778 ntAPPRIS P1 TSL 1 (best) BASIC15.82■□□□□ 0.12
CLPTM1O96005 LYPLAL1-201ENST00000366927 1819 ntTSL 1 (best) BASIC15.82■□□□□ 0.12
CLPTM1O96005 B3GAT1-201ENST00000312527 3652 ntAPPRIS P1 TSL 1 (best) BASIC15.82■□□□□ 0.12
CLPTM1O96005 CSK-202ENST00000439220 1900 ntAPPRIS P1 TSL 2 BASIC15.82■□□□□ 0.12
CLPTM1O96005 FBLN7-205ENST00000409903 1989 ntTSL 5 BASIC15.82■□□□□ 0.12
CLPTM1O96005 GDA-201ENST00000238018 2074 ntTSL 1 (best) BASIC15.82■□□□□ 0.12
CLPTM1O96005 PRPS1-204ENST00000372435 2073 ntAPPRIS P1 TSL 1 (best) BASIC15.82■□□□□ 0.12
CLPTM1O96005 CSAD-202ENST00000379843 2086 ntTSL 5 BASIC15.82■□□□□ 0.12
CLPTM1O96005 RAP1GDS1-203ENST00000380158 2085 ntTSL 1 (best) BASIC15.82■□□□□ 0.12
CLPTM1O96005 PRLHR-201ENST00000239032 5446 ntAPPRIS P1 TSL 1 (best) BASIC15.82■□□□□ 0.12
CLPTM1O96005 ARID5A-201ENST00000357485 2188 ntAPPRIS P1 TSL 1 (best) BASIC15.82■□□□□ 0.12
CLPTM1O96005 TK2-221ENST00000620035 5060 ntTSL 2 BASIC15.82■□□□□ 0.12
CLPTM1O96005 DDRGK1-202ENST00000380201 1128 ntTSL 2 BASIC15.82■□□□□ 0.12
CLPTM1O96005 RNF144A-AS1-205ENST00000439208 757 ntTSL 3 BASIC15.82■□□□□ 0.12
CLPTM1O96005 SMIM29-206ENST00000476320 1297 ntAPPRIS P1 TSL 2 BASIC15.82■□□□□ 0.12
CLPTM1O96005 USF2-205ENST00000594064 1179 ntTSL 2 BASIC15.82■□□□□ 0.12
CLPTM1O96005 RPARP-AS1-206ENST00000596366 631 ntTSL 3 BASIC15.82■□□□□ 0.12
CLPTM1O96005 DHRS2-210ENST00000611765 1287 ntAPPRIS ALT2 TSL 2 BASIC15.82■□□□□ 0.12
CLPTM1O96005 mascRNA-menRNA.2-201ENST00000616984 58 ntBASIC15.82■□□□□ 0.12
CLPTM1O96005 HYMAI.1-201ENST00000620949 238 ntBASIC15.82■□□□□ 0.12
CLPTM1O96005 AC079602.3-201ENST00000623931 403 ntBASIC15.82■□□□□ 0.12
CLPTM1O96005 GPD1L-201ENST00000282541 4060 ntAPPRIS P1 TSL 1 (best) BASIC15.82■□□□□ 0.12
CLPTM1O96005 JPH4-201ENST00000356300 4278 ntAPPRIS P2 TSL 1 (best) BASIC15.82■□□□□ 0.12
CLPTM1O96005 ELP5-204ENST00000396628 1423 ntAPPRIS P2 TSL 1 (best) BASIC15.82■□□□□ 0.12
CLPTM1O96005 LINC00167-201ENST00000530583 1419 ntBASIC15.82■□□□□ 0.12
CLPTM1O96005 PRKD2-216ENST00000601806 2906 ntAPPRIS ALT2 TSL 5 BASIC15.82■□□□□ 0.12
CLPTM1O96005 AC002310.2-202ENST00000492040 1488 ntTSL 1 (best) BASIC15.82■□□□□ 0.12
CLPTM1O96005 NFIX-209ENST00000587760 1487 ntTSL 1 (best) BASIC15.82■□□□□ 0.12
CLPTM1O96005 LINC00634-201ENST00000381348 1510 ntTSL 1 (best) BASIC15.82■□□□□ 0.12
CLPTM1O96005 AL360181.3-201ENST00000468317 1605 ntAPPRIS P1 TSL 5 BASIC15.82■□□□□ 0.12
CLPTM1O96005 BCAR1-204ENST00000418647 3387 ntAPPRIS ALT2 TSL 2 BASIC15.82■□□□□ 0.12
CLPTM1O96005 AP1S3-206ENST00000443700 1785 ntTSL 1 (best) BASIC15.82■□□□□ 0.12
CLPTM1O96005 PATZ1-203ENST00000351933 3638 ntTSL 1 (best) BASIC15.82■□□□□ 0.12
CLPTM1O96005 HMOX2-217ENST00000619528 1829 ntAPPRIS P1 TSL 5 BASIC15.82■□□□□ 0.12
CLPTM1O96005 PDZD4-201ENST00000164640 3689 ntAPPRIS P3 TSL 1 (best) BASIC15.82■□□□□ 0.12
CLPTM1O96005 FOXJ2-201ENST00000162391 5523 ntAPPRIS P2 TSL 1 (best) BASIC15.82■□□□□ 0.12
CLPTM1O96005 SLC25A33-201ENST00000302692 3854 ntAPPRIS P1 TSL 1 (best) BASIC15.82■□□□□ 0.12
CLPTM1O96005 NDRG2-207ENST00000397847 2084 ntTSL 1 (best) BASIC15.82■□□□□ 0.12
CLPTM1O96005 COCH-202ENST00000396618 2536 ntAPPRIS P1 TSL 1 (best) BASIC15.82■□□□□ 0.12
CLPTM1O96005 PCK2-203ENST00000545054 2505 ntTSL 2 BASIC15.82■□□□□ 0.12
CLPTM1O96005 ARMC5-204ENST00000538189 3017 ntAPPRIS ALT2 TSL 2 BASIC15.81■□□□□ 0.12
CLPTM1O96005 HOXC12-201ENST00000243103 3335 ntAPPRIS P1 TSL 1 (best) BASIC15.81■□□□□ 0.12
CLPTM1O96005 LINC00639-201ENST00000553932 4496 ntTSL 2 BASIC15.81■□□□□ 0.12
CLPTM1O96005 DAP-201ENST00000230895 2339 ntAPPRIS P1 TSL 1 (best) BASIC15.81■□□□□ 0.12
CLPTM1O96005 WNT9B-201ENST00000290015 1376 ntAPPRIS P1 TSL 1 (best) BASIC15.81■□□□□ 0.12
Retrieved 100 of 98,524 protein–RNA pairs in 62.3 ms