Protein–RNA interactions for Protein: O75056

SDC3, Syndecan-3, humanhuman

Predictions only

Length 442 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SDC3O75056 DNM1-202ENST00000372923 3244 ntAPPRIS P3 TSL 1 (best) BASIC16.29■□□□□ 0.2
SDC3O75056 VPS26A-202ENST00000373382 3229 ntAPPRIS P1 TSL 5 BASIC16.29■□□□□ 0.2
SDC3O75056 BACE1-201ENST00000313005 6326 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
SDC3O75056 NOTCH3-201ENST00000263388 8666 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
SDC3O75056 THTPA-203ENST00000554789 1595 ntTSL 2 BASIC16.29■□□□□ 0.2
SDC3O75056 PCDHGC3-205ENST00000617641 2346 ntTSL 1 (best) BASIC16.29■□□□□ 0.2
SDC3O75056 EIF3B-201ENST00000360876 3055 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
SDC3O75056 SNAP23-201ENST00000249647 2687 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
SDC3O75056 DVL2-209ENST00000575458 2659 ntAPPRIS ALT2 TSL 2 BASIC16.29■□□□□ 0.2
SDC3O75056 NQO2-201ENST00000338130 1515 ntAPPRIS P1 TSL 2 BASIC16.29■□□□□ 0.2
SDC3O75056 AC104809.2-201ENST00000418218 2274 ntTSL 1 (best) BASIC16.29■□□□□ 0.2
SDC3O75056 TVP23C-204ENST00000438826 1852 ntAPPRIS ALT1 TSL 1 (best) BASIC16.29■□□□□ 0.2
SDC3O75056 DEF8-225ENST00000569453 1852 ntAPPRIS P4 TSL 2 BASIC16.29■□□□□ 0.2
SDC3O75056 INPP5A-203ENST00000368594 2967 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
SDC3O75056 TMPRSS9-205ENST00000613480 2568 ntTSL 1 (best) BASIC16.29■□□□□ 0.2
SDC3O75056 CARNS1-202ENST00000445895 3971 ntAPPRIS P1 TSL 5 BASIC16.28■□□□□ 0.2
SDC3O75056 AC105202.1-204ENST00000502167 1781 ntTSL 1 (best) BASIC16.28■□□□□ 0.2
SDC3O75056 AC099398.1-201ENST00000567919 2776 ntBASIC16.28■□□□□ 0.2
SDC3O75056 PHGDH-208ENST00000641023 2096 ntAPPRIS P1 BASIC16.28■□□□□ 0.2
SDC3O75056 KCNJ5-201ENST00000338350 1734 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
SDC3O75056 PIGT-257ENST00000640210 1715 ntTSL 5 BASIC16.28■□□□□ 0.2
SDC3O75056 ORMDL1-203ENST00000392350 2009 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
SDC3O75056 STARD3NL-204ENST00000434197 1341 ntTSL 5 BASIC16.28■□□□□ 0.2
SDC3O75056 ZNF256-202ENST00000598928 1958 ntTSL 1 (best) BASIC16.28■□□□□ 0.2
SDC3O75056 AHSA2-202ENST00000394457 6574 ntTSL 1 (best) BASIC16.28■□□□□ 0.2
SDC3O75056 EXOC5-201ENST00000340918 2632 ntTSL 2 BASIC16.28■□□□□ 0.2
SDC3O75056 LUC7L2-202ENST00000354926 2645 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
SDC3O75056 MAP7-203ENST00000438100 2633 ntAPPRIS ALT2 TSL 2 BASIC16.28■□□□□ 0.2
SDC3O75056 AC092053.1-201ENST00000605787 1936 ntBASIC16.28■□□□□ 0.2
SDC3O75056 DUSP8-202ENST00000397374 4480 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
SDC3O75056 MRGPRD-201ENST00000309106 966 ntAPPRIS P1 BASIC16.28■□□□□ 0.2
SDC3O75056 EDF1-203ENST00000371649 790 ntTSL 2 BASIC16.28■□□□□ 0.2
SDC3O75056 FAM207CP-201ENST00000443486 507 ntBASIC16.28■□□□□ 0.2
SDC3O75056 PSMB5-204ENST00000460922 729 ntTSL 2 BASIC16.28■□□□□ 0.2
SDC3O75056 AC105233.2-201ENST00000523697 349 ntBASIC16.28■□□□□ 0.2
SDC3O75056 AF228730.5-201ENST00000530288 346 ntBASIC16.28■□□□□ 0.2
SDC3O75056 TATDN3-212ENST00000530441 492 ntTSL 3 BASIC16.28■□□□□ 0.2
SDC3O75056 ZNF710-AS1-201ENST00000558334 1168 ntTSL 1 (best) BASIC16.28■□□□□ 0.2
SDC3O75056 AC067852.1-201ENST00000585572 594 ntTSL 4 BASIC16.28■□□□□ 0.2
SDC3O75056 AC073592.8-201ENST00000624126 511 ntBASIC16.28■□□□□ 0.2
SDC3O75056 AP3S2-216ENST00000617003 1561 ntBASIC16.28■□□□□ 0.2
SDC3O75056 PPRC1-201ENST00000278070 5330 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
SDC3O75056 ARID5A-201ENST00000357485 2188 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
SDC3O75056 AC108860.2-201ENST00000562760 2183 ntBASIC16.28■□□□□ 0.2
SDC3O75056 ZNF48-205ENST00000613509 3339 ntAPPRIS P1 TSL 2 BASIC16.28■□□□□ 0.2
SDC3O75056 GDA-201ENST00000238018 2074 ntTSL 1 (best) BASIC16.28■□□□□ 0.2
SDC3O75056 ALDH3B1-208ENST00000617288 2078 ntTSL 1 (best) BASIC16.28■□□□□ 0.2
SDC3O75056 DDHD1-201ENST00000323669 5503 ntTSL 2 BASIC16.28■□□□□ 0.2
SDC3O75056 ATAD3A-207ENST00000536055 2332 ntTSL 2 BASIC16.28■□□□□ 0.2
SDC3O75056 TLE2-217ENST00000590536 2344 ntAPPRIS ALT2 TSL 1 (best) BASIC16.28■□□□□ 0.2
SDC3O75056 FBXO4-202ENST00000296812 1731 ntTSL 1 (best) BASIC16.28■□□□□ 0.2
SDC3O75056 SMOX-205ENST00000379460 2230 ntAPPRIS P1 TSL 2 BASIC16.27■□□□□ 0.2
SDC3O75056 TDG-209ENST00000544861 1387 ntTSL 2 BASIC16.27■□□□□ 0.2
SDC3O75056 PTP4A3-202ENST00000349124 2710 ntTSL 1 (best) BASIC16.27■□□□□ 0.2
SDC3O75056 DOCK7-203ENST00000404627 2678 ntTSL 2 BASIC16.27■□□□□ 0.2
SDC3O75056 LRRC32-202ENST00000404995 2656 ntAPPRIS P1 TSL 5 BASIC16.27■□□□□ 0.2
SDC3O75056 PRR29-AS1-202ENST00000580942 2926 ntTSL 2 BASIC16.27■□□□□ 0.2
SDC3O75056 PCDHA8-201ENST00000378123 2616 ntAPPRIS ALT2 BASIC16.27■□□□□ 0.2
SDC3O75056 TNIP1-221ENST00000610874 2629 ntTSL 5 BASIC16.27■□□□□ 0.2
SDC3O75056 IRF1-202ENST00000405885 2061 ntAPPRIS P1 TSL 5 BASIC16.27■□□□□ 0.2
SDC3O75056 AC127496.1-202ENST00000573602 2091 ntTSL 2 BASIC16.27■□□□□ 0.2
SDC3O75056 AJUBA-202ENST00000361265 2569 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.2
SDC3O75056 GMNN-201ENST00000230056 1262 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.2
SDC3O75056 PNKD-201ENST00000248451 758 ntTSL 1 (best) BASIC16.27■□□□□ 0.2
SDC3O75056 COPE-202ENST00000349893 948 ntTSL 2 BASIC16.27■□□□□ 0.2
SDC3O75056 GOLGA6L11P-201ENST00000417252 1298 ntBASIC16.27■□□□□ 0.2
SDC3O75056 GABARAPL1-202ENST00000421801 855 ntTSL 2 BASIC16.27■□□□□ 0.2
SDC3O75056 AL451069.2-201ENST00000428814 297 ntTSL 3 BASIC16.27■□□□□ 0.2
SDC3O75056 SMIM15-AS1-201ENST00000506902 796 ntTSL 3 BASIC16.27■□□□□ 0.2
SDC3O75056 CHMP4A-204ENST00000530996 967 ntTSL 3 BASIC16.27■□□□□ 0.2
SDC3O75056 MIR210HG-203ENST00000533920 816 ntTSL 2 BASIC16.27■□□□□ 0.2
SDC3O75056 AC116003.1-201ENST00000578340 536 ntTSL 3 BASIC16.27■□□□□ 0.2
SDC3O75056 AC092070.4-201ENST00000599803 507 ntTSL 5 BASIC16.27■□□□□ 0.2
SDC3O75056 SPDYE12P-201ENST00000618416 771 ntBASIC16.27■□□□□ 0.2
SDC3O75056 FAM92A-219ENST00000620645 1014 ntAPPRIS ALT2 TSL 5 BASIC16.27■□□□□ 0.2
SDC3O75056 HHIPL1-201ENST00000330710 7390 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.2
SDC3O75056 PPP3CA-201ENST00000323055 4519 ntTSL 1 (best) BASIC16.27■□□□□ 0.2
SDC3O75056 GALNT9-202ENST00000397325 1727 ntTSL 1 (best) BASIC16.27■□□□□ 0.19
SDC3O75056 FOXO3-202ENST00000406360 7341 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.19
SDC3O75056 FAM184A-201ENST00000338891 4141 ntAPPRIS P4 TSL 1 (best) BASIC16.27■□□□□ 0.19
SDC3O75056 OTOL1-201ENST00000327928 1434 ntAPPRIS P1 TSL 2 BASIC16.27■□□□□ 0.19
SDC3O75056 AC100757.3-201ENST00000622361 1406 ntBASIC16.27■□□□□ 0.19
SDC3O75056 BRI3BP-201ENST00000341446 6648 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.19
SDC3O75056 ADAMTSL1-202ENST00000327883 1864 ntTSL 1 (best) BASIC16.27■□□□□ 0.19
SDC3O75056 AC067852.2-201ENST00000590513 2313 ntBASIC16.27■□□□□ 0.19
SDC3O75056 AL671710.1-201ENST00000610245 2349 ntBASIC16.27■□□□□ 0.19
SDC3O75056 LHX9-204ENST00000367391 1623 ntTSL 5 BASIC16.27■□□□□ 0.19
SDC3O75056 EIF5A-206ENST00000571955 1366 ntAPPRIS P1 TSL 5 BASIC16.26■□□□□ 0.19
SDC3O75056 FGFR4-203ENST00000393648 2733 ntAPPRIS ALT2 TSL 2 BASIC16.26■□□□□ 0.19
SDC3O75056 WLS-202ENST00000354777 2037 ntTSL 1 (best) BASIC16.26■□□□□ 0.19
SDC3O75056 ANKRD13B-209ENST00000614878 2670 ntAPPRIS P1 TSL 5 BASIC16.26■□□□□ 0.19
SDC3O75056 RPS6KA5-201ENST00000418736 2249 ntTSL 1 (best) BASIC16.26■□□□□ 0.19
SDC3O75056 PDGFA-201ENST00000354513 1308 ntTSL 1 (best) BASIC16.26■□□□□ 0.19
SDC3O75056 HEY1-208ENST00000523976 1325 ntTSL 2 BASIC16.26■□□□□ 0.19
SDC3O75056 GCSH-209ENST00000639689 2412 ntTSL 5 BASIC16.26■□□□□ 0.19
SDC3O75056 SHOX-201ENST00000334060 1951 ntTSL 5 BASIC16.26■□□□□ 0.19
SDC3O75056 AL109910.2-201ENST00000607733 1953 ntTSL 2 BASIC16.26■□□□□ 0.19
SDC3O75056 USE1-201ENST00000263897 843 ntAPPRIS P2 TSL 1 (best) BASIC16.26■□□□□ 0.19
SDC3O75056 TTLL10-201ENST00000379288 2114 ntTSL 1 (best) BASIC16.26■□□□□ 0.19
SDC3O75056 CDC25B-204ENST00000379598 2990 ntTSL 2 BASIC16.26■□□□□ 0.19
Retrieved 100 of 98,524 protein–RNA pairs in 84.7 ms