Protein–RNA interactions for Protein: O60232

SSSCA1, Sjoegren syndrome/scleroderma autoantigen 1, humanhuman

Predictions only

Length 199 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SSSCA1O60232 MMP2-201ENST00000219070 3741 ntAPPRIS P1 TSL 1 (best) BASIC13.69□□□□□ -0.22
SSSCA1O60232 CD55-204ENST00000367064 2760 ntAPPRIS P3 TSL 1 (best) BASIC13.69□□□□□ -0.22
SSSCA1O60232 PRKD2-216ENST00000601806 2906 ntAPPRIS ALT2 TSL 5 BASIC13.69□□□□□ -0.22
SSSCA1O60232 CDR2L-201ENST00000337231 3536 ntAPPRIS P1 TSL 1 (best) BASIC13.69□□□□□ -0.22
SSSCA1O60232 SH3GLB2-202ENST00000372559 1365 ntAPPRIS P1 TSL 1 (best) BASIC13.69□□□□□ -0.22
SSSCA1O60232 LINC01568-207ENST00000641790 1380 ntBASIC13.69□□□□□ -0.22
SSSCA1O60232 MINK1-201ENST00000347992 4863 ntAPPRIS ALT2 TSL 1 (best) BASIC13.69□□□□□ -0.22
SSSCA1O60232 CELF6-204ENST00000543764 1676 ntTSL 2 BASIC13.69□□□□□ -0.22
SSSCA1O60232 SF3A2-201ENST00000221494 1963 ntAPPRIS P2 TSL 1 (best) BASIC13.69□□□□□ -0.22
SSSCA1O60232 AC012485.3-201ENST00000637634 2424 ntTSL 5 BASIC13.69□□□□□ -0.22
SSSCA1O60232 NPHP4-211ENST00000622020 3004 ntTSL 5 BASIC13.69□□□□□ -0.22
SSSCA1O60232 HAUS3-204ENST00000506763 3166 ntTSL 2 BASIC13.69□□□□□ -0.22
SSSCA1O60232 NTRK2-202ENST00000304053 8226 ntTSL 1 (best) BASIC13.68□□□□□ -0.22
SSSCA1O60232 SLC26A1-202ENST00000398516 3109 ntAPPRIS P1 TSL 1 (best) BASIC13.68□□□□□ -0.22
SSSCA1O60232 ASNS-201ENST00000175506 2356 ntAPPRIS P1 TSL 1 (best) BASIC13.68□□□□□ -0.22
SSSCA1O60232 BRSK1-202ENST00000326848 2095 ntTSL 5 BASIC13.68□□□□□ -0.22
SSSCA1O60232 GRB7-204ENST00000394211 2093 ntAPPRIS P1 TSL 1 (best) BASIC13.68□□□□□ -0.22
SSSCA1O60232 PEPD-201ENST00000244137 1910 ntAPPRIS P1 TSL 1 (best) BASIC13.68□□□□□ -0.22
SSSCA1O60232 DMRTC2-201ENST00000269945 1792 ntAPPRIS P1 TSL 1 (best) BASIC13.68□□□□□ -0.22
SSSCA1O60232 TTC29-205ENST00000504425 1777 ntAPPRIS ALT2 TSL 5 BASIC13.68□□□□□ -0.22
SSSCA1O60232 TRAPPC3-209ENST00000616395 1336 ntTSL 3 BASIC13.68□□□□□ -0.22
SSSCA1O60232 TRAPPC3-210ENST00000617904 1305 ntTSL 2 BASIC13.68□□□□□ -0.22
SSSCA1O60232 FOXI2-201ENST00000388920 3217 ntAPPRIS P1 TSL 1 (best) BASIC13.68□□□□□ -0.22
SSSCA1O60232 CUL3-201ENST00000264414 6741 ntAPPRIS P1 TSL 1 (best) BASIC13.68□□□□□ -0.22
SSSCA1O60232 GGT6-204ENST00000574154 2482 ntAPPRIS P1 TSL 1 (best) BASIC13.68□□□□□ -0.22
SSSCA1O60232 GPR153-201ENST00000377893 4082 ntAPPRIS P1 TSL 1 (best) BASIC13.68□□□□□ -0.22
SSSCA1O60232 ELL-203ENST00000596124 1852 ntTSL 1 (best) BASIC13.68□□□□□ -0.22
SSSCA1O60232 BCS1L-202ENST00000392109 1583 ntAPPRIS P1 TSL 1 (best) BASIC13.68□□□□□ -0.22
SSSCA1O60232 BCS1L-204ENST00000392111 1584 ntAPPRIS P1 TSL 1 (best) BASIC13.68□□□□□ -0.22
SSSCA1O60232 ALPI-201ENST00000295463 2550 ntAPPRIS P1 TSL 1 (best) BASIC13.68□□□□□ -0.22
SSSCA1O60232 MIEF1-202ENST00000402881 2269 ntTSL 1 (best) BASIC13.68□□□□□ -0.22
SSSCA1O60232 CAPRIN1-207ENST00000529307 2266 ntAPPRIS ALT2 TSL 2 BASIC13.68□□□□□ -0.22
SSSCA1O60232 AK2-201ENST00000354858 1021 ntAPPRIS P4 TSL 1 (best) BASIC13.68□□□□□ -0.22
SSSCA1O60232 UHRF2-202ENST00000381373 802 ntTSL 3 BASIC13.68□□□□□ -0.22
SSSCA1O60232 FAM220CP-201ENST00000395253 831 ntBASIC13.68□□□□□ -0.22
SSSCA1O60232 DHRS4L2-202ENST00000397071 1117 ntTSL 2 BASIC13.68□□□□□ -0.22
SSSCA1O60232 SMIM11A-202ENST00000399295 1074 ntAPPRIS P1 TSL 2 BASIC13.68□□□□□ -0.22
SSSCA1O60232 KLF4P1-201ENST00000412782 1185 ntBASIC13.68□□□□□ -0.22
SSSCA1O60232 AP001625.2-201ENST00000442605 575 ntTSL 2 BASIC13.68□□□□□ -0.22
SSSCA1O60232 ZNF436-AS1-203ENST00000454117 997 ntTSL 1 (best) BASIC13.68□□□□□ -0.22
SSSCA1O60232 NDUFB2-203ENST00000461457 559 ntTSL 3 BASIC13.68□□□□□ -0.22
SSSCA1O60232 UBA5-213ENST00000494238 2997 ntTSL 1 (best) BASIC13.68□□□□□ -0.22
SSSCA1O60232 TMA16-209ENST00000513272 803 ntTSL 2 BASIC13.68□□□□□ -0.22
SSSCA1O60232 TMEM9B-203ENST00000528117 949 ntTSL 2 BASIC13.68□□□□□ -0.22
SSSCA1O60232 AC003688.1-201ENST00000577138 489 ntAPPRIS P1 TSL 3 BASIC13.68□□□□□ -0.22
SSSCA1O60232 AL449423.1-201ENST00000578935 435 ntTSL 3 BASIC13.68□□□□□ -0.22
SSSCA1O60232 UBALD1-209ENST00000591897 1275 ntTSL 2 BASIC13.68□□□□□ -0.22
SSSCA1O60232 FCGRT-210ENST00000596975 1054 ntTSL 5 BASIC13.68□□□□□ -0.22
SSSCA1O60232 SMIM11B-207ENST00000624758 1074 ntAPPRIS P1 TSL 2 BASIC13.68□□□□□ -0.22
SSSCA1O60232 MAP1LC3B-201ENST00000268607 2688 ntAPPRIS P1 TSL 1 (best) BASIC13.68□□□□□ -0.22
SSSCA1O60232 SEH1L-202ENST00000399892 1846 ntTSL 1 (best) BASIC13.68□□□□□ -0.22
SSSCA1O60232 SLC44A2-203ENST00000586078 3784 ntTSL 5 BASIC13.68□□□□□ -0.22
SSSCA1O60232 MOXD1-202ENST00000367963 3059 ntAPPRIS P1 TSL 1 (best) BASIC13.68□□□□□ -0.22
SSSCA1O60232 EIF4G1-216ENST00000427845 5038 ntTSL 5 BASIC13.68□□□□□ -0.22
SSSCA1O60232 TRIM60-203ENST00000508504 1674 ntAPPRIS P1 TSL 1 (best) BASIC13.68□□□□□ -0.22
SSSCA1O60232 MTA1-203ENST00000406191 2770 ntAPPRIS P5 TSL 2 BASIC13.68□□□□□ -0.22
SSSCA1O60232 TAF1D-203ENST00000448108 2082 ntAPPRIS P1 TSL 5 BASIC13.68□□□□□ -0.22
SSSCA1O60232 ISPD-202ENST00000407010 5524 ntAPPRIS P1 TSL 5 BASIC13.68□□□□□ -0.22
SSSCA1O60232 ELFN1-202ENST00000561626 3742 ntAPPRIS P1 TSL 2 BASIC13.68□□□□□ -0.22
SSSCA1O60232 PDP1-201ENST00000297598 4272 ntAPPRIS P3 TSL 1 (best) BASIC13.68□□□□□ -0.22
SSSCA1O60232 DUSP18-201ENST00000334679 2479 ntAPPRIS P1 TSL 1 (best) BASIC13.68□□□□□ -0.22
SSSCA1O60232 SYNCRIP-202ENST00000369622 3023 ntAPPRIS P3 TSL 1 (best) BASIC13.68□□□□□ -0.22
SSSCA1O60232 POM121C-206ENST00000607367 3690 ntAPPRIS ALT2 TSL 5 BASIC13.68□□□□□ -0.22
SSSCA1O60232 IQCE-210ENST00000438376 2170 ntAPPRIS ALT2 TSL 5 BASIC13.68□□□□□ -0.22
SSSCA1O60232 P3H1-202ENST00000296388 2585 ntAPPRIS P3 TSL 1 (best) BASIC13.68□□□□□ -0.22
SSSCA1O60232 LATS1-202ENST00000392273 2567 ntTSL 1 (best) BASIC13.68□□□□□ -0.22
SSSCA1O60232 Z83836.1-201ENST00000624605 1642 ntBASIC13.68□□□□□ -0.22
SSSCA1O60232 MUL1-201ENST00000264198 2438 ntAPPRIS P1 TSL 1 (best) BASIC13.68□□□□□ -0.22
SSSCA1O60232 ZNF671-201ENST00000317398 2431 ntAPPRIS P1 TSL 1 (best) BASIC13.68□□□□□ -0.22
SSSCA1O60232 AL353593.2-201ENST00000602529 1483 ntBASIC13.67□□□□□ -0.22
SSSCA1O60232 TK2-221ENST00000620035 5060 ntTSL 2 BASIC13.67□□□□□ -0.22
SSSCA1O60232 TMUB2-209ENST00000587989 1969 ntAPPRIS ALT1 TSL 3 BASIC13.67□□□□□ -0.22
SSSCA1O60232 IL6ST-209ENST00000502326 3007 ntAPPRIS P1 TSL 5 BASIC13.67□□□□□ -0.22
SSSCA1O60232 BCL2L11-219ENST00000619294 5132 ntTSL 5 BASIC13.67□□□□□ -0.22
SSSCA1O60232 TPD52L2-203ENST00000348257 2237 ntAPPRIS ALT1 TSL 1 (best) BASIC13.67□□□□□ -0.22
SSSCA1O60232 COX10-201ENST00000261643 2873 ntAPPRIS P1 TSL 1 (best) BASIC13.67□□□□□ -0.22
SSSCA1O60232 MBD4-203ENST00000429544 2478 ntAPPRIS ALT2 TSL 1 (best) BASIC13.67□□□□□ -0.22
SSSCA1O60232 UBE3A-207ENST00000614096 8741 ntAPPRIS ALT1 TSL 1 (best) BASIC13.67□□□□□ -0.22
SSSCA1O60232 TLDC2-201ENST00000217320 2083 ntAPPRIS P1 TSL 1 (best) BASIC13.67□□□□□ -0.22
SSSCA1O60232 AC125634.1-201ENST00000438758 1403 ntBASIC13.67□□□□□ -0.22
SSSCA1O60232 MYEF2-201ENST00000267836 2958 ntAPPRIS ALT2 TSL 1 (best) BASIC13.67□□□□□ -0.22
SSSCA1O60232 MBD1-202ENST00000269471 2980 ntAPPRIS ALT2 TSL 5 BASIC13.67□□□□□ -0.22
SSSCA1O60232 PRSS50-201ENST00000460241 2960 ntAPPRIS P1 TSL 2 BASIC13.67□□□□□ -0.22
SSSCA1O60232 ADAMTS15-201ENST00000299164 5673 ntAPPRIS P1 TSL 1 (best) BASIC13.67□□□□□ -0.22
SSSCA1O60232 ASB7-202ENST00000343276 1694 ntTSL 1 (best) BASIC13.67□□□□□ -0.22
SSSCA1O60232 SEC63-201ENST00000369002 6411 ntAPPRIS P1 TSL 1 (best) BASIC13.67□□□□□ -0.22
SSSCA1O60232 ADAD1-203ENST00000388725 1918 ntTSL 2 BASIC13.67□□□□□ -0.22
SSSCA1O60232 COPE-201ENST00000262812 1141 ntAPPRIS P1 TSL 1 (best) BASIC13.67□□□□□ -0.22
SSSCA1O60232 AC003669.1-201ENST00000334569 611 ntBASIC13.67□□□□□ -0.22
SSSCA1O60232 COPE-203ENST00000351079 907 ntTSL 2 BASIC13.67□□□□□ -0.22
SSSCA1O60232 FAM19A3-201ENST00000361886 1056 ntAPPRIS P1 TSL 1 (best) BASIC13.67□□□□□ -0.22
SSSCA1O60232 GUCA2B-201ENST00000372581 597 ntAPPRIS P1 TSL 1 (best) BASIC13.67□□□□□ -0.22
SSSCA1O60232 STARP1-201ENST00000397973 869 ntBASIC13.67□□□□□ -0.22
SSSCA1O60232 AC007040.1-201ENST00000416229 477 ntTSL 3 BASIC13.67□□□□□ -0.22
SSSCA1O60232 MYD88-206ENST00000443433 914 ntTSL 1 (best) BASIC13.67□□□□□ -0.22
SSSCA1O60232 TSPY15P-201ENST00000457163 923 ntBASIC13.67□□□□□ -0.22
SSSCA1O60232 MUC1-212ENST00000457295 1161 ntAPPRIS ALT2 TSL 2 BASIC13.67□□□□□ -0.22
SSSCA1O60232 PRKCB-209ENST00000498058 480 ntTSL 3 BASIC13.67□□□□□ -0.22
SSSCA1O60232 AC026412.1-201ENST00000507290 1033 ntTSL 1 (best) BASIC13.67□□□□□ -0.22
SSSCA1O60232 LINC01385-201ENST00000512310 780 ntTSL 4 BASIC13.67□□□□□ -0.22
Retrieved 100 of 98,524 protein–RNA pairs in 30.3 ms