Protein–RNA interactions for Protein: O43868

SLC28A2, Sodium/nucleoside cotransporter 2, humanhuman

Predictions only

Length 658 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SLC28A2O43868 PIGX-202ENST00000392391 3057 ntAPPRIS ALT2 TSL 1 (best) BASIC16.14■□□□□ 0.17
SLC28A2O43868 DPEP3-201ENST00000268793 2018 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.17
SLC28A2O43868 ACTRT3-201ENST00000330368 2005 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.17
SLC28A2O43868 HS3ST3B1-201ENST00000360954 5367 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.17
SLC28A2O43868 AC004835.1-201ENST00000428222 2907 ntTSL 5 BASIC16.14■□□□□ 0.17
SLC28A2O43868 NKAIN1-201ENST00000373736 2589 ntAPPRIS P1 TSL 2 BASIC16.14■□□□□ 0.17
SLC28A2O43868 TMTC4-203ENST00000376234 3483 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.17
SLC28A2O43868 PTHLH-201ENST00000201015 1872 ntAPPRIS P3 TSL 3 BASIC16.14■□□□□ 0.17
SLC28A2O43868 SPAG6-202ENST00000376603 2770 ntTSL 1 (best) BASIC16.14■□□□□ 0.17
SLC28A2O43868 MANBAL-204ENST00000397151 1503 ntAPPRIS P1 TSL 3 BASIC16.14■□□□□ 0.17
SLC28A2O43868 MANBAL-205ENST00000397152 1539 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.17
SLC28A2O43868 TRPV4-205ENST00000537083 2436 ntTSL 1 (best) BASIC16.14■□□□□ 0.17
SLC28A2O43868 SHANK1-204ENST00000391814 6622 ntAPPRIS ALT2 TSL 5 BASIC16.14■□□□□ 0.17
SLC28A2O43868 ANKRD24-202ENST00000318934 3906 ntAPPRIS P2 TSL 5 BASIC16.13■□□□□ 0.17
SLC28A2O43868 WBP2-201ENST00000254806 1944 ntAPPRIS P2 TSL 1 (best) BASIC16.13■□□□□ 0.17
SLC28A2O43868 CD244-203ENST00000368034 2463 ntAPPRIS P3 TSL 1 (best) BASIC16.13■□□□□ 0.17
SLC28A2O43868 ADAD1-203ENST00000388725 1918 ntTSL 2 BASIC16.13■□□□□ 0.17
SLC28A2O43868 SLC12A9-202ENST00000415287 1912 ntTSL 1 (best) BASIC16.13■□□□□ 0.17
SLC28A2O43868 MELTF-201ENST00000296350 3963 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
SLC28A2O43868 SLC18B1-201ENST00000275227 2368 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
SLC28A2O43868 RPL13P5-202ENST00000412023 1438 ntTSL 2 BASIC16.13■□□□□ 0.17
SLC28A2O43868 WTAP-205ENST00000614346 1623 ntTSL 2 BASIC16.13■□□□□ 0.17
SLC28A2O43868 WRAP53-203ENST00000431639 1818 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
SLC28A2O43868 WRAP53-204ENST00000457584 1828 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
SLC28A2O43868 C11orf80-203ENST00000525449 1821 ntAPPRIS ALT2 TSL 1 (best) BASIC16.13■□□□□ 0.17
SLC28A2O43868 NDRG2-204ENST00000360463 2047 ntAPPRIS ALT1 TSL 1 (best) BASIC16.13■□□□□ 0.17
SLC28A2O43868 SEPT9-202ENST00000423034 3984 ntAPPRIS ALT1 TSL 1 (best) BASIC16.13■□□□□ 0.17
SLC28A2O43868 CNTNAP3-205ENST00000377659 2649 ntTSL 2 BASIC16.13■□□□□ 0.17
SLC28A2O43868 VPS13B-201ENST00000355155 2822 ntTSL 1 (best) BASIC16.13■□□□□ 0.17
SLC28A2O43868 C9orf116-202ENST00000371789 1278 ntTSL 1 (best) BASIC16.13■□□□□ 0.17
SLC28A2O43868 C10orf35-201ENST00000373279 1065 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
SLC28A2O43868 CD9-202ENST00000382515 1229 ntTSL 5 BASIC16.13■□□□□ 0.17
SLC28A2O43868 KLF4P1-201ENST00000412782 1185 ntBASIC16.13■□□□□ 0.17
SLC28A2O43868 AC008127.1-201ENST00000548424 499 ntTSL 5 BASIC16.13■□□□□ 0.17
SLC28A2O43868 AL157871.1-202ENST00000556458 478 ntTSL 5 BASIC16.13■□□□□ 0.17
SLC28A2O43868 UBE2Q2L-201ENST00000558195 498 ntAPPRIS P1 TSL 2 BASIC16.13■□□□□ 0.17
SLC28A2O43868 AC243562.3-201ENST00000559866 1212 ntTSL 1 (best) BASIC16.13■□□□□ 0.17
SLC28A2O43868 GIPC1-213ENST00000591349 1068 ntTSL 2 BASIC16.13■□□□□ 0.17
SLC28A2O43868 AC011491.2-201ENST00000599584 447 ntTSL 5 BASIC16.13■□□□□ 0.17
SLC28A2O43868 WNT1-202ENST00000613114 1278 ntTSL 5 BASIC16.13■□□□□ 0.17
SLC28A2O43868 CLN3-246ENST00000636228 1224 ntTSL 1 (best) BASIC16.13■□□□□ 0.17
SLC28A2O43868 AL353593.2-201ENST00000602529 1483 ntBASIC16.13■□□□□ 0.17
SLC28A2O43868 WASHC2C-204ENST00000374362 4623 ntAPPRIS P3 TSL 1 (best) BASIC16.13■□□□□ 0.17
SLC28A2O43868 SLC3A2-201ENST00000338663 1904 ntTSL 1 (best) BASIC16.13■□□□□ 0.17
SLC28A2O43868 C9orf62-201ENST00000623103 1924 ntTSL 1 (best) BASIC16.13■□□□□ 0.17
SLC28A2O43868 SMARCA4-201ENST00000344626 5392 ntTSL 1 (best) BASIC16.13■□□□□ 0.17
SLC28A2O43868 PNRC1-202ENST00000354922 1345 ntTSL 1 (best) BASIC16.13■□□□□ 0.17
SLC28A2O43868 TMEM229B-201ENST00000357461 4068 ntAPPRIS P1 TSL 2 BASIC16.13■□□□□ 0.17
SLC28A2O43868 LINC00894-202ENST00000425602 1597 ntTSL 2 BASIC16.13■□□□□ 0.17
SLC28A2O43868 RAB7A-203ENST00000482525 1589 ntTSL 1 (best) BASIC16.13■□□□□ 0.17
SLC28A2O43868 AC009336.1-201ENST00000608941 1553 ntBASIC16.13■□□□□ 0.17
SLC28A2O43868 NDRG4-202ENST00000356752 1375 ntTSL 2 BASIC16.13■□□□□ 0.17
SLC28A2O43868 ZNF773-201ENST00000282292 2206 ntAPPRIS P3 TSL 1 (best) BASIC16.13■□□□□ 0.17
SLC28A2O43868 EXD3-201ENST00000340951 2872 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
SLC28A2O43868 TNFRSF14-AS1-205ENST00000449660 1629 ntTSL 2 BASIC16.12■□□□□ 0.17
SLC28A2O43868 AC112229.1-202ENST00000490013 2918 ntTSL 2 BASIC16.12■□□□□ 0.17
SLC28A2O43868 PTPA-203ENST00000348141 2737 ntTSL 5 BASIC16.12■□□□□ 0.17
SLC28A2O43868 PTPA-207ENST00000393370 2737 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
SLC28A2O43868 NF2-202ENST00000338641 6025 ntAPPRIS P4 TSL 1 (best) BASIC16.12■□□□□ 0.17
SLC28A2O43868 SLC25A23-202ENST00000301454 3425 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
SLC28A2O43868 RNF112-201ENST00000461366 3212 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
SLC28A2O43868 AL135999.2-201ENST00000622438 1686 ntBASIC16.12■□□□□ 0.17
SLC28A2O43868 UGP2-202ENST00000394417 2136 ntTSL 1 (best) BASIC16.12■□□□□ 0.17
SLC28A2O43868 AGGF1P2-201ENST00000426656 2106 ntBASIC16.12■□□□□ 0.17
SLC28A2O43868 PPT2-246ENST00000375137 1945 ntAPPRIS ALT2 TSL 1 (best) BASIC16.12■□□□□ 0.17
SLC28A2O43868 PDE9A-203ENST00000335440 1728 ntTSL 1 (best) BASIC16.12■□□□□ 0.17
SLC28A2O43868 ZNF580-202ENST00000543039 1707 ntAPPRIS P1 BASIC16.12■□□□□ 0.17
SLC28A2O43868 PSMG3-201ENST00000252329 1007 ntAPPRIS P1 TSL 3 BASIC16.12■□□□□ 0.17
SLC28A2O43868 STOM-202ENST00000347359 870 ntTSL 2 BASIC16.12■□□□□ 0.17
SLC28A2O43868 GUK1-203ENST00000366718 1275 ntAPPRIS P3 TSL 3 BASIC16.12■□□□□ 0.17
SLC28A2O43868 SNHG11-204ENST00000420006 720 ntTSL 3 BASIC16.12■□□□□ 0.17
SLC28A2O43868 SNHG11-206ENST00000432153 1181 ntTSL 3 BASIC16.12■□□□□ 0.17
SLC28A2O43868 AL022068.1-202ENST00000432171 794 ntTSL 3 BASIC16.12■□□□□ 0.17
SLC28A2O43868 IRF3-204ENST00000442265 315 ntTSL 1 (best) BASIC16.12■□□□□ 0.17
SLC28A2O43868 CTDSP1-204ENST00000443891 1109 ntTSL 3 BASIC16.12■□□□□ 0.17
SLC28A2O43868 MOGAT1-201ENST00000446656 1048 ntAPPRIS P1 TSL 5 BASIC16.12■□□□□ 0.17
SLC28A2O43868 ZNF655-216ENST00000449244 544 ntTSL 4 BASIC16.12■□□□□ 0.17
SLC28A2O43868 HCG4B-203ENST00000450128 991 ntBASIC16.12■□□□□ 0.17
SLC28A2O43868 GAPDHP21-201ENST00000450301 1010 ntBASIC16.12■□□□□ 0.17
SLC28A2O43868 AC108073.2-201ENST00000464002 357 ntBASIC16.12■□□□□ 0.17
SLC28A2O43868 RAB3A-202ENST00000464076 1253 ntTSL 2 BASIC16.12■□□□□ 0.17
SLC28A2O43868 AC082651.1-201ENST00000478468 832 ntTSL 1 (best) BASIC16.12■□□□□ 0.17
SLC28A2O43868 NDUFA6-202ENST00000498737 1256 ntTSL 1 (best) BASIC16.12■□□□□ 0.17
SLC28A2O43868 SMN2-210ENST00000511812 867 ntTSL 2 BASIC16.12■□□□□ 0.17
SLC28A2O43868 FGFR1OP2-206ENST00000546072 956 ntTSL 1 (best) BASIC16.12■□□□□ 0.17
SLC28A2O43868 NDUFA6-203ENST00000602404 1080 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
SLC28A2O43868 LCE1E-203ENST00000619588 267 ntAPPRIS ALT2 TSL 5 BASIC16.12■□□□□ 0.17
SLC28A2O43868 CTDSP2-201ENST00000398073 4795 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
SLC28A2O43868 RTL6-201ENST00000341255 5495 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
SLC28A2O43868 C11orf68-203ENST00000530188 1528 ntAPPRIS ALT2 BASIC16.12■□□□□ 0.17
SLC28A2O43868 HTR1A-201ENST00000323865 1778 ntAPPRIS P1 BASIC16.12■□□□□ 0.17
SLC28A2O43868 EHD2-202ENST00000538399 1766 ntTSL 2 BASIC16.12■□□□□ 0.17
SLC28A2O43868 ABCG5-201ENST00000260645 2740 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
SLC28A2O43868 RAI2-203ENST00000415486 2037 ntTSL 2 BASIC16.12■□□□□ 0.17
SLC28A2O43868 AC069281.2-201ENST00000485071 4401 ntTSL 2 BASIC16.12■□□□□ 0.17
SLC28A2O43868 HNRNPH3-202ENST00000354695 1332 ntAPPRIS ALT1 TSL 1 (best) BASIC16.12■□□□□ 0.17
SLC28A2O43868 ZDHHC24-201ENST00000310442 4721 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
SLC28A2O43868 BCS1L-202ENST00000392109 1583 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
SLC28A2O43868 BCS1L-204ENST00000392111 1584 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
SLC28A2O43868 EGFEM1P-202ENST00000431685 1563 ntBASIC16.12■□□□□ 0.17
Retrieved 100 of 98,524 protein–RNA pairs in 59.4 ms