Protein–RNA interactions for Protein: H7C350

CCDC188, Coiled-coil domain-containing protein 188, humanhuman

Predictions only

Length 402 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC188H7C350 MMAB-204ENST00000537236 1342 ntTSL 3 BASIC17.4■□□□□ 0.38
CCDC188H7C350 PANK2-209ENST00000621507 1763 ntTSL 1 (best) BASIC17.4■□□□□ 0.38
CCDC188H7C350 LRIT1-201ENST00000372105 2228 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
CCDC188H7C350 AADAT-201ENST00000337664 2261 ntAPPRIS P3 TSL 1 (best) BASIC17.4■□□□□ 0.38
CCDC188H7C350 AMZ2-203ENST00000392720 1378 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
CCDC188H7C350 AGPAT2-205ENST00000538402 1357 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
CCDC188H7C350 PMS1-212ENST00000432292 3234 ntTSL 2 BASIC17.4■□□□□ 0.38
CCDC188H7C350 MXD1-201ENST00000264444 5587 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.38
CCDC188H7C350 FES-204ENST00000414248 2327 ntTSL 2 BASIC17.39■□□□□ 0.38
CCDC188H7C350 CTNNBIP1-203ENST00000377263 3000 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.38
CCDC188H7C350 CABP1-204ENST00000453000 1857 ntTSL 1 (best) BASIC17.39■□□□□ 0.38
CCDC188H7C350 FAM92B-201ENST00000539556 1898 ntAPPRIS P2 TSL 5 BASIC17.39■□□□□ 0.38
CCDC188H7C350 GABRB3-215ENST00000622697 5876 ntTSL 5 BASIC17.39■□□□□ 0.38
CCDC188H7C350 ZC3H7B-201ENST00000352645 5909 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.38
CCDC188H7C350 FSD2-202ENST00000541889 2356 ntTSL 1 (best) BASIC17.39■□□□□ 0.38
CCDC188H7C350 CLUH-202ENST00000570628 5244 ntAPPRIS P2 TSL 2 BASIC17.39■□□□□ 0.38
CCDC188H7C350 AL121845.3-201ENST00000490623 3119 ntTSL 5 BASIC17.39■□□□□ 0.37
CCDC188H7C350 SYT6-201ENST00000369547 4369 ntTSL 1 (best) BASIC17.39■□□□□ 0.37
CCDC188H7C350 CACNA2D3-201ENST00000288197 3671 ntAPPRIS ALT2 TSL 1 (best) BASIC17.39■□□□□ 0.37
CCDC188H7C350 CACNA2D3-206ENST00000474759 3675 ntAPPRIS P2 TSL 1 (best) BASIC17.39■□□□□ 0.37
CCDC188H7C350 SAP130-203ENST00000357702 4173 ntTSL 1 (best) BASIC17.39■□□□□ 0.37
CCDC188H7C350 DHRS1-201ENST00000288111 1480 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
CCDC188H7C350 PC-214ENST00000628663 1470 ntTSL 5 BASIC17.39■□□□□ 0.37
CCDC188H7C350 TBC1D9B-202ENST00000356834 5173 ntAPPRIS ALT2 TSL 1 (best) BASIC17.39■□□□□ 0.37
CCDC188H7C350 AC022532.1-201ENST00000624563 1728 ntBASIC17.39■□□□□ 0.37
CCDC188H7C350 LINC01144-201ENST00000626198 1710 ntBASIC17.39■□□□□ 0.37
CCDC188H7C350 BRF1-201ENST00000327359 2292 ntTSL 2 BASIC17.39■□□□□ 0.37
CCDC188H7C350 LINC01529-205ENST00000637365 2000 ntTSL 5 BASIC17.39■□□□□ 0.37
CCDC188H7C350 HDAC5-201ENST00000225983 5326 ntAPPRIS P3 TSL 5 BASIC17.39■□□□□ 0.37
CCDC188H7C350 LOH12CR2-201ENST00000381800 1540 ntTSL 1 (best) BASIC17.39■□□□□ 0.37
CCDC188H7C350 NSUN5P1-202ENST00000421140 1535 ntBASIC17.39■□□□□ 0.37
CCDC188H7C350 NSUN5P2-203ENST00000457352 1529 ntBASIC17.39■□□□□ 0.37
CCDC188H7C350 DRAXINP1-201ENST00000437611 948 ntBASIC17.39■□□□□ 0.37
CCDC188H7C350 KRT17P6-201ENST00000453795 1220 ntBASIC17.39■□□□□ 0.37
CCDC188H7C350 ZNF706-204ENST00000518336 501 ntAPPRIS P1 TSL 4 BASIC17.39■□□□□ 0.37
CCDC188H7C350 AC002091.2-201ENST00000585297 402 ntTSL 2 BASIC17.39■□□□□ 0.37
CCDC188H7C350 SIGLEC29P-201ENST00000599873 1114 ntBASIC17.39■□□□□ 0.37
CCDC188H7C350 TSSC2-204ENST00000529482 2337 ntTSL 2 BASIC17.39■□□□□ 0.37
CCDC188H7C350 TSC2-202ENST00000350773 5532 ntAPPRIS ALT2 TSL 1 (best) BASIC17.39■□□□□ 0.37
CCDC188H7C350 DAGLB-204ENST00000436575 2385 ntTSL 2 BASIC17.39■□□□□ 0.37
CCDC188H7C350 SCNN1A-221ENST00000543768 2361 ntAPPRIS ALT2 TSL 2 BASIC17.39■□□□□ 0.37
CCDC188H7C350 TAX1BP3-202ENST00000611779 1302 ntTSL 2 BASIC17.39■□□□□ 0.37
CCDC188H7C350 HIC2-201ENST00000407464 6798 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
CCDC188H7C350 EML3-202ENST00000394773 3256 ntAPPRIS P2 TSL 1 (best) BASIC17.39■□□□□ 0.37
CCDC188H7C350 HS6ST2-201ENST00000370833 1938 ntTSL 5 BASIC17.39■□□□□ 0.37
CCDC188H7C350 GGPS1-206ENST00000488594 1396 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
CCDC188H7C350 AC016734.2-201ENST00000624325 1377 ntBASIC17.39■□□□□ 0.37
CCDC188H7C350 TPD52L2-203ENST00000348257 2237 ntAPPRIS ALT1 TSL 1 (best) BASIC17.39■□□□□ 0.37
CCDC188H7C350 PACS1-209ENST00000529757 1688 ntAPPRIS ALT2 TSL 1 (best) BASIC17.39■□□□□ 0.37
CCDC188H7C350 LMF2-202ENST00000474879 2582 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
CCDC188H7C350 LMNA-202ENST00000361308 1713 ntTSL 5 BASIC17.38■□□□□ 0.37
CCDC188H7C350 CHID1-203ENST00000436108 1477 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
CCDC188H7C350 RNF182-206ENST00000537388 3274 ntAPPRIS P1 TSL 2 BASIC17.38■□□□□ 0.37
CCDC188H7C350 KIFC3-206ENST00000541240 3047 ntTSL 2 BASIC17.38■□□□□ 0.37
CCDC188H7C350 AC019205.2-202ENST00000441363 2403 ntTSL 5 BASIC17.38■□□□□ 0.37
CCDC188H7C350 TUBGCP6-204ENST00000439308 6078 ntTSL 1 (best) BASIC17.38■□□□□ 0.37
CCDC188H7C350 HLA-B-249ENST00000412585 1547 ntAPPRIS P1 BASIC17.38■□□□□ 0.37
CCDC188H7C350 SNX6-202ENST00000396526 3398 ntTSL 1 (best) BASIC17.38■□□□□ 0.37
CCDC188H7C350 CCHCR1-202ENST00000396263 2490 ntTSL 5 BASIC17.38■□□□□ 0.37
CCDC188H7C350 FAM131B-206ENST00000443739 4382 ntAPPRIS ALT1 TSL 1 (best) BASIC17.38■□□□□ 0.37
CCDC188H7C350 LRRFIP2-205ENST00000421276 2522 ntTSL 2 BASIC17.38■□□□□ 0.37
CCDC188H7C350 SMARCA4-201ENST00000344626 5392 ntTSL 1 (best) BASIC17.38■□□□□ 0.37
CCDC188H7C350 BCL2L10-201ENST00000260442 1249 ntAPPRIS P3 TSL 1 (best) BASIC17.38■□□□□ 0.37
CCDC188H7C350 AGTRAP-201ENST00000314340 1107 ntAPPRIS P3 TSL 1 (best) BASIC17.38■□□□□ 0.37
CCDC188H7C350 PPIH-202ENST00000372549 327 ntTSL 3 BASIC17.38■□□□□ 0.37
CCDC188H7C350 DYNLL1-203ENST00000392509 814 ntAPPRIS P1 TSL 3 BASIC17.38■□□□□ 0.37
CCDC188H7C350 RPS14-203ENST00000407193 784 ntAPPRIS P1 TSL 2 BASIC17.38■□□□□ 0.37
CCDC188H7C350 ABCD1P5-201ENST00000445663 754 ntBASIC17.38■□□□□ 0.37
CCDC188H7C350 RPP14-206ENST00000466547 805 ntAPPRIS P1 TSL 3 BASIC17.38■□□□□ 0.37
CCDC188H7C350 KNCN-203ENST00000481882 1037 ntAPPRIS ALT2 TSL 5 BASIC17.38■□□□□ 0.37
CCDC188H7C350 MED16-213ENST00000616387 1078 ntTSL 1 (best) BASIC17.38■□□□□ 0.37
CCDC188H7C350 TBC1D9B-220ENST00000630103 303 ntTSL 5 BASIC17.38■□□□□ 0.37
CCDC188H7C350 AL512625.3-203ENST00000445604 1602 ntTSL 5 BASIC17.38■□□□□ 0.37
CCDC188H7C350 MAPKAP1-202ENST00000350766 3256 ntTSL 1 (best) BASIC17.38■□□□□ 0.37
CCDC188H7C350 AHR-201ENST00000242057 6276 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
CCDC188H7C350 SARDH-202ENST00000371867 1326 ntTSL 1 (best) BASIC17.38■□□□□ 0.37
CCDC188H7C350 C9orf172-201ENST00000436881 4387 ntAPPRIS P1 BASIC17.38■□□□□ 0.37
CCDC188H7C350 AP002360.1-202ENST00000530460 2462 ntAPPRIS ALT2 BASIC17.38■□□□□ 0.37
CCDC188H7C350 SSB-202ENST00000409333 1782 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
CCDC188H7C350 MYB-201ENST00000316528 3571 ntTSL 5 BASIC17.38■□□□□ 0.37
CCDC188H7C350 MYB-241ENST00000616088 3573 ntTSL 5 BASIC17.38■□□□□ 0.37
CCDC188H7C350 IQCE-210ENST00000438376 2170 ntAPPRIS ALT2 TSL 5 BASIC17.38■□□□□ 0.37
CCDC188H7C350 BIN3-201ENST00000276416 1835 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
CCDC188H7C350 ANKS6-202ENST00000375019 2586 ntTSL 5 BASIC17.37■□□□□ 0.37
CCDC188H7C350 DNAJC28-203ENST00000402202 1480 ntAPPRIS P1 TSL 5 BASIC17.37■□□□□ 0.37
CCDC188H7C350 PCGF3-213ENST00000620529 1899 ntBASIC17.37■□□□□ 0.37
CCDC188H7C350 SUSD4-204ENST00000366878 3025 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
CCDC188H7C350 RGN-203ENST00000397180 2257 ntAPPRIS P1 TSL 5 BASIC17.37■□□□□ 0.37
CCDC188H7C350 PDE1B-201ENST00000243052 3444 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
CCDC188H7C350 GOLGA2P2Y-202ENST00000423852 1506 ntBASIC17.37■□□□□ 0.37
CCDC188H7C350 AC007495.1-201ENST00000501259 2678 ntTSL 1 (best) BASIC17.37■□□□□ 0.37
CCDC188H7C350 PTBP1-202ENST00000350092 3069 ntAPPRIS ALT1 TSL 1 (best) BASIC17.37■□□□□ 0.37
CCDC188H7C350 SERF2-203ENST00000381359 1931 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
CCDC188H7C350 EPS8L2-201ENST00000318562 3148 ntAPPRIS P2 TSL 1 (best) BASIC17.37■□□□□ 0.37
CCDC188H7C350 CD55-204ENST00000367064 2760 ntAPPRIS P3 TSL 1 (best) BASIC17.37■□□□□ 0.37
CCDC188H7C350 TRIM7-201ENST00000274773 2840 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
CCDC188H7C350 GPR108-202ENST00000430424 2009 ntAPPRIS ALT2 TSL 5 BASIC17.37■□□□□ 0.37
CCDC188H7C350 AC068888.1-203ENST00000546566 1650 ntTSL 2 BASIC17.37■□□□□ 0.37
CCDC188H7C350 GOSR2-201ENST00000225567 1245 ntTSL 1 (best) BASIC17.37■□□□□ 0.37
CCDC188H7C350 ELF3-AS1-202ENST00000419190 788 ntTSL 2 BASIC17.37■□□□□ 0.37
Retrieved 100 of 98,524 protein–RNA pairs in 29.2 ms