Protein–RNA interactions for Protein: A8TX70

COL6A5, Collagen alpha-5(VI) chain, humanhuman

Predictions only

Length 2,615 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A5A8TX70 RN7SL725P-201ENST00000606439 259 ntBASIC12.73□□□□□ -0.37
COL6A5A8TX70 PSMB6-205ENST00000614486 871 ntTSL 2 BASIC12.73□□□□□ -0.37
COL6A5A8TX70 LMNA-208ENST00000448611 1943 ntTSL 2 BASIC12.73□□□□□ -0.37
COL6A5A8TX70 CCDC177-201ENST00000599174 4131 ntAPPRIS P1 TSL 3 BASIC12.73□□□□□ -0.37
COL6A5A8TX70 ZFYVE19-203ENST00000355341 2775 ntAPPRIS P3 TSL 1 (best) BASIC12.73□□□□□ -0.37
COL6A5A8TX70 HOXC11-201ENST00000243082 2039 ntTSL 3 BASIC12.73□□□□□ -0.37
COL6A5A8TX70 EPN3-216ENST00000537145 2223 ntTSL 5 BASIC12.73□□□□□ -0.37
COL6A5A8TX70 GTF2IP1-210ENST00000622829 3605 ntTSL 1 (best) BASIC12.73□□□□□ -0.37
COL6A5A8TX70 ISLR2-210ENST00000565540 2780 ntAPPRIS P1 TSL 4 BASIC12.73□□□□□ -0.37
COL6A5A8TX70 NTF3-202ENST00000423158 1336 ntAPPRIS ALT1 TSL 1 (best) BASIC12.73□□□□□ -0.37
COL6A5A8TX70 ADRA1A-206ENST00000380586 2304 ntTSL 1 (best) BASIC12.73□□□□□ -0.37
COL6A5A8TX70 SMPD3-211ENST00000568373 2073 ntTSL 1 (best) BASIC12.73□□□□□ -0.37
COL6A5A8TX70 BORCS5-201ENST00000298571 549 ntTSL 1 (best) BASIC12.73□□□□□ -0.37
COL6A5A8TX70 RESP18-201ENST00000333527 795 ntAPPRIS P2 TSL 1 (best) BASIC12.73□□□□□ -0.37
COL6A5A8TX70 AC116609.2-201ENST00000431542 256 ntTSL 5 BASIC12.73□□□□□ -0.37
COL6A5A8TX70 OLR1-203ENST00000432556 950 ntTSL 2 BASIC12.73□□□□□ -0.37
COL6A5A8TX70 RPL13AP19-201ENST00000434320 584 ntBASIC12.73□□□□□ -0.37
COL6A5A8TX70 NKAIN1P1-201ENST00000435754 582 ntBASIC12.73□□□□□ -0.37
COL6A5A8TX70 AC073094.1-201ENST00000453798 433 ntTSL 2 BASIC12.73□□□□□ -0.37
COL6A5A8TX70 RBM4B-202ENST00000524637 867 ntTSL 5 BASIC12.73□□□□□ -0.37
COL6A5A8TX70 AC011474.2-201ENST00000579268 543 ntTSL 3 BASIC12.73□□□□□ -0.37
COL6A5A8TX70 TLDC2-203ENST00000602922 1179 ntAPPRIS P1 TSL 1 (best) BASIC12.73□□□□□ -0.37
COL6A5A8TX70 NSUN2-206ENST00000506139 2619 ntAPPRIS ALT2 TSL 2 BASIC12.73□□□□□ -0.37
COL6A5A8TX70 NEK3-208ENST00000618534 2414 ntAPPRIS P2 TSL 5 BASIC12.73□□□□□ -0.37
COL6A5A8TX70 MAGEA8-201ENST00000286482 1778 ntAPPRIS P1 TSL 1 (best) BASIC12.72□□□□□ -0.37
COL6A5A8TX70 WRNIP1-202ENST00000380769 3239 ntTSL 1 (best) BASIC12.72□□□□□ -0.37
COL6A5A8TX70 FAHD2B-202ENST00000414820 1388 ntAPPRIS P1 TSL 5 BASIC12.72□□□□□ -0.37
COL6A5A8TX70 TEFM-205ENST00000581216 1891 ntAPPRIS P1 TSL 1 (best) BASIC12.72□□□□□ -0.37
COL6A5A8TX70 PCDHA1-202ENST00000394633 2204 ntTSL 1 (best) BASIC12.72□□□□□ -0.37
COL6A5A8TX70 STK4-201ENST00000372801 2038 ntTSL 2 BASIC12.72□□□□□ -0.37
COL6A5A8TX70 THOC6-201ENST00000253952 1246 ntTSL 2 BASIC12.72□□□□□ -0.37
COL6A5A8TX70 TNNT2-206ENST00000367320 1007 ntTSL 1 (best) BASIC12.72□□□□□ -0.37
COL6A5A8TX70 AK1-202ENST00000373156 757 ntAPPRIS P1 TSL 3 BASIC12.72□□□□□ -0.37
COL6A5A8TX70 AL845321.1-202ENST00000432011 786 ntTSL 5 BASIC12.72□□□□□ -0.37
COL6A5A8TX70 HYAL1-208ENST00000457214 1084 ntTSL 1 (best) BASIC12.72□□□□□ -0.37
COL6A5A8TX70 OIP5-AS1-209ENST00000561226 775 ntTSL 3 BASIC12.72□□□□□ -0.37
COL6A5A8TX70 AC091812.3-201ENST00000621362 345 ntBASIC12.72□□□□□ -0.37
COL6A5A8TX70 ISOC1-201ENST00000173527 1940 ntAPPRIS P1 TSL 1 (best) BASIC12.72□□□□□ -0.37
COL6A5A8TX70 MSTO2P-201ENST00000314835 1709 ntBASIC12.72□□□□□ -0.37
COL6A5A8TX70 POR-209ENST00000439269 1858 ntTSL 2 BASIC12.72□□□□□ -0.37
COL6A5A8TX70 AC243965.2-201ENST00000612576 2671 ntTSL 5 BASIC12.72□□□□□ -0.37
COL6A5A8TX70 TAPBP-238ENST00000475304 1686 ntAPPRIS ALT2 TSL 5 BASIC12.72□□□□□ -0.37
COL6A5A8TX70 GABRB2-202ENST00000353437 1963 ntAPPRIS P1 TSL 1 (best) BASIC12.72□□□□□ -0.37
COL6A5A8TX70 IGHA1-202ENST00000641837 1310 ntAPPRIS P5 BASIC12.72□□□□□ -0.37
COL6A5A8TX70 BFSP1-201ENST00000377868 2063 ntTSL 1 (best) BASIC12.72□□□□□ -0.37
COL6A5A8TX70 MAPK8IP3-202ENST00000356010 4456 ntTSL 5 BASIC12.72□□□□□ -0.37
COL6A5A8TX70 PSME1-201ENST00000206451 1006 ntAPPRIS P1 TSL 1 (best) BASIC12.72□□□□□ -0.37
COL6A5A8TX70 FBLN7-202ENST00000331203 2301 ntAPPRIS P1 TSL 1 (best) BASIC12.72□□□□□ -0.37
COL6A5A8TX70 CNR1-201ENST00000362094 1252 ntTSL 1 (best) BASIC12.72□□□□□ -0.37
COL6A5A8TX70 CELA2B-201ENST00000375910 923 ntAPPRIS P1 TSL 1 (best) BASIC12.72□□□□□ -0.37
COL6A5A8TX70 HYAL3-206ENST00000513170 636 ntTSL 1 (best) BASIC12.72□□□□□ -0.37
COL6A5A8TX70 EIF3K-202ENST00000538434 966 ntTSL 2 BASIC12.72□□□□□ -0.37
COL6A5A8TX70 CR589904.1-202ENST00000611154 660 ntTSL 5 BASIC12.72□□□□□ -0.37
COL6A5A8TX70 GGNBP2-210ENST00000611219 2315 ntTSL 2 BASIC12.72□□□□□ -0.37
COL6A5A8TX70 DUSP14-204ENST00000613659 1559 ntAPPRIS P1 TSL 2 BASIC12.72□□□□□ -0.37
COL6A5A8TX70 AGAP1-213ENST00000619456 1057 ntTSL 5 BASIC12.72□□□□□ -0.37
COL6A5A8TX70 CLPB-212ENST00000543042 2133 ntTSL 2 BASIC12.72□□□□□ -0.37
COL6A5A8TX70 ATP6V1B1-202ENST00000412314 1805 ntTSL 5 BASIC12.71□□□□□ -0.37
COL6A5A8TX70 MAPK8IP1-201ENST00000241014 3050 ntAPPRIS P1 TSL 1 (best) BASIC12.71□□□□□ -0.37
COL6A5A8TX70 LRRC27-214ENST00000625755 1738 ntAPPRIS ALT2 TSL 1 (best) BASIC12.71□□□□□ -0.37
COL6A5A8TX70 ZBTB48-202ENST00000377674 2293 ntAPPRIS P1 TSL 1 (best) BASIC12.71□□□□□ -0.37
COL6A5A8TX70 BCL2L12-202ENST00000246785 1431 ntAPPRIS P3 TSL 1 (best) BASIC12.71□□□□□ -0.37
COL6A5A8TX70 AC243836.1-201ENST00000416696 438 ntTSL 3 BASIC12.71□□□□□ -0.37
COL6A5A8TX70 HNRNPA1P13-201ENST00000510646 963 ntBASIC12.71□□□□□ -0.37
COL6A5A8TX70 MPZL3-203ENST00000525386 973 ntTSL 1 (best) BASIC12.71□□□□□ -0.37
COL6A5A8TX70 AC008750.2-202ENST00000532688 729 ntTSL 3 BASIC12.71□□□□□ -0.37
COL6A5A8TX70 TMBIM4-205ENST00000535812 766 ntTSL 4 BASIC12.71□□□□□ -0.37
COL6A5A8TX70 TMBIM4-212ENST00000556010 610 ntTSL 5 BASIC12.71□□□□□ -0.37
COL6A5A8TX70 AC074044.1-201ENST00000609673 707 ntBASIC12.71□□□□□ -0.37
COL6A5A8TX70 MAP3K13-212ENST00000448876 1681 ntTSL 1 (best) BASIC12.71□□□□□ -0.37
COL6A5A8TX70 MAEA-201ENST00000264750 2058 ntTSL 2 BASIC12.71□□□□□ -0.37
COL6A5A8TX70 KLHL23-201ENST00000272797 2087 ntAPPRIS P1 TSL 2 BASIC12.71□□□□□ -0.37
COL6A5A8TX70 HNRNPUL2-201ENST00000301785 5106 ntAPPRIS P1 TSL 1 (best) BASIC12.71□□□□□ -0.37
COL6A5A8TX70 FOXRED2-203ENST00000397223 2184 ntAPPRIS P1 TSL 1 (best) BASIC12.71□□□□□ -0.37
COL6A5A8TX70 LRRC27-203ENST00000368613 2113 ntAPPRIS P3 TSL 1 (best) BASIC12.71□□□□□ -0.37
COL6A5A8TX70 DIO3-201ENST00000510508 2102 ntAPPRIS P1 BASIC12.71□□□□□ -0.37
COL6A5A8TX70 FBXO41-204ENST00000520530 3293 ntAPPRIS P1 TSL 5 BASIC12.71□□□□□ -0.37
COL6A5A8TX70 DRG1-201ENST00000331457 1746 ntAPPRIS P1 TSL 1 (best) BASIC12.71□□□□□ -0.37
COL6A5A8TX70 ITPKB-202ENST00000366784 3146 ntTSL 1 (best) BASIC12.71□□□□□ -0.37
COL6A5A8TX70 ATP6AP2-233ENST00000638153 1303 ntAPPRIS ALT2 TSL 5 BASIC12.71□□□□□ -0.38
COL6A5A8TX70 YIPF2-201ENST00000253031 2087 ntAPPRIS P1 TSL 1 (best) BASIC12.71□□□□□ -0.38
COL6A5A8TX70 REEP2-202ENST00000378339 2170 ntAPPRIS ALT1 TSL 1 (best) BASIC12.71□□□□□ -0.38
COL6A5A8TX70 CCDC17-209ENST00000528266 2181 ntAPPRIS P3 TSL 2 BASIC12.71□□□□□ -0.38
COL6A5A8TX70 EXOSC6-201ENST00000435634 5153 ntAPPRIS P1 BASIC12.71□□□□□ -0.38
COL6A5A8TX70 VPS29-201ENST00000360579 1091 ntTSL 1 (best) BASIC12.71□□□□□ -0.38
COL6A5A8TX70 TPD52L2-207ENST00000369927 1094 ntTSL 4 BASIC12.71□□□□□ -0.38
COL6A5A8TX70 AL161638.1-201ENST00000420354 481 ntTSL 3 BASIC12.71□□□□□ -0.38
COL6A5A8TX70 AC016700.1-201ENST00000429424 312 ntBASIC12.71□□□□□ -0.38
COL6A5A8TX70 TMEM176A-202ENST00000461345 635 ntAPPRIS ALT2 TSL 5 BASIC12.71□□□□□ -0.38
COL6A5A8TX70 AC104241.2-201ENST00000532748 789 ntTSL 3 BASIC12.71□□□□□ -0.38
COL6A5A8TX70 LINC01089-209ENST00000542933 1220 ntTSL 3 BASIC12.71□□□□□ -0.38
COL6A5A8TX70 AC016044.1-201ENST00000560818 572 ntTSL 4 BASIC12.71□□□□□ -0.38
COL6A5A8TX70 LINC00928-204ENST00000561201 1123 ntTSL 1 (best) BASIC12.71□□□□□ -0.38
COL6A5A8TX70 GNRHR2-203ENST00000581100 1187 ntBASIC12.71□□□□□ -0.38
COL6A5A8TX70 TMEM97-205ENST00000583381 578 ntTSL 4 BASIC12.71□□□□□ -0.38
COL6A5A8TX70 SRD5A3-AS1-211ENST00000599135 737 ntTSL 5 BASIC12.71□□□□□ -0.38
COL6A5A8TX70 ZNF446-201ENST00000335841 1889 ntTSL 5 BASIC12.71□□□□□ -0.38
COL6A5A8TX70 ZNF503-201ENST00000372524 3347 ntAPPRIS P1 TSL 1 (best) BASIC12.71□□□□□ -0.38
COL6A5A8TX70 TEAD4-203ENST00000397122 1396 ntTSL 1 (best) BASIC12.71□□□□□ -0.38
COL6A5A8TX70 ZBTB14-202ENST00000400143 1814 ntAPPRIS P1 TSL 1 (best) BASIC12.7□□□□□ -0.38
Retrieved 100 of 98,524 protein–RNA pairs in 40.4 ms