Protein–RNA interactions for Protein: Q9UPQ4

TRIM35, Tripartite motif-containing protein 35, humanhuman

Predictions only

Length 493 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM35Q9UPQ4 ATXN3-253ENST00000621269 936 ntTSL 5 BASIC31.4■■■□□ 2.62
TRIM35Q9UPQ4 MAD2L2-201ENST00000235310 1860 ntAPPRIS P1 TSL 2 BASIC31.4■■■□□ 2.62
TRIM35Q9UPQ4 RCCD1-203ENST00000555155 1871 ntAPPRIS ALT1 TSL 5 BASIC31.4■■■□□ 2.62
TRIM35Q9UPQ4 TMEM203-201ENST00000343666 1557 ntAPPRIS P1 BASIC31.39■■■□□ 2.62
TRIM35Q9UPQ4 RBFA-201ENST00000262197 1219 ntTSL 1 (best) BASIC31.39■■■□□ 2.62
TRIM35Q9UPQ4 MRPL23-202ENST00000381519 643 ntAPPRIS P1 TSL 3 BASIC31.39■■■□□ 2.62
TRIM35Q9UPQ4 MRPL23-205ENST00000397298 736 ntAPPRIS P1 TSL 1 (best) BASIC31.39■■■□□ 2.62
TRIM35Q9UPQ4 GPRC5B-202ENST00000535671 1215 ntAPPRIS ALT2 TSL 1 (best) BASIC31.39■■■□□ 2.62
TRIM35Q9UPQ4 SEC11C-204ENST00000587834 1202 ntAPPRIS P1 TSL 1 (best) BASIC31.39■■■□□ 2.62
TRIM35Q9UPQ4 SNAI3-AS1-204ENST00000567997 2048 ntBASIC31.39■■■□□ 2.62
TRIM35Q9UPQ4 FBXL20-203ENST00000577399 1620 ntTSL 5 BASIC31.38■■■□□ 2.61
TRIM35Q9UPQ4 SDHAF1-201ENST00000378887 1117 ntAPPRIS P1 BASIC31.38■■■□□ 2.61
TRIM35Q9UPQ4 FKBP1B-202ENST00000380991 1010 ntTSL 1 (best) BASIC31.38■■■□□ 2.61
TRIM35Q9UPQ4 GUCD1-207ENST00000447813 895 ntTSL 3 BASIC31.38■■■□□ 2.61
TRIM35Q9UPQ4 TMUB1-202ENST00000392818 1563 ntAPPRIS P1 TSL 1 (best) BASIC31.38■■■□□ 2.61
TRIM35Q9UPQ4 PFDN2-201ENST00000368010 677 ntAPPRIS P1 TSL 1 (best) BASIC31.37■■■□□ 2.61
TRIM35Q9UPQ4 MTERF3-201ENST00000287025 1409 ntAPPRIS P1 TSL 1 (best) BASIC31.37■■■□□ 2.61
TRIM35Q9UPQ4 UBE2E3-202ENST00000410062 1570 ntAPPRIS P1 TSL 1 (best) BASIC31.36■■■□□ 2.61
TRIM35Q9UPQ4 AL354928.1-201ENST00000438380 617 ntTSL 2 BASIC31.36■■■□□ 2.61
TRIM35Q9UPQ4 C9orf147-202ENST00000457681 561 ntTSL 2 BASIC31.36■■■□□ 2.61
TRIM35Q9UPQ4 ALG2-203ENST00000476832 1880 ntAPPRIS P1 TSL 1 (best) BASIC31.35■■■□□ 2.61
TRIM35Q9UPQ4 RCAN1-201ENST00000313806 2490 ntTSL 1 (best) BASIC31.35■■■□□ 2.61
TRIM35Q9UPQ4 PLA2G10-201ENST00000438167 1000 ntAPPRIS P1 TSL 1 (best) BASIC31.35■■■□□ 2.61
TRIM35Q9UPQ4 TNFSF12-TNFSF13-201ENST00000293826 1816 ntAPPRIS P1 TSL 1 (best) BASIC31.35■■■□□ 2.61
TRIM35Q9UPQ4 CFAP99-207ENST00000635017 2298 ntTSL 5 BASIC31.35■■■□□ 2.61
TRIM35Q9UPQ4 MAPKAP1-207ENST00000394060 1586 ntTSL 1 (best) BASIC31.34■■■□□ 2.61
TRIM35Q9UPQ4 RBFOX2-209ENST00000438146 1356 ntAPPRIS P3 TSL 1 (best) BASIC31.34■■■□□ 2.61
TRIM35Q9UPQ4 AC010980.1-201ENST00000587192 1142 ntBASIC31.34■■■□□ 2.61
TRIM35Q9UPQ4 RABL6-204ENST00000371671 1580 ntAPPRIS ALT2 TSL 1 (best) BASIC31.34■■■□□ 2.61
TRIM35Q9UPQ4 KAT8-202ENST00000448516 1789 ntTSL 1 (best) BASIC31.33■■■□□ 2.61
TRIM35Q9UPQ4 PDPK1-204ENST00000441549 1729 ntTSL 1 (best) BASIC31.33■■■□□ 2.61
TRIM35Q9UPQ4 TMCO6-201ENST00000252100 1834 ntTSL 1 (best) BASIC31.33■■■□□ 2.61
TRIM35Q9UPQ4 RHOBTB3-206ENST00000506817 1432 ntTSL 2 BASIC31.32■■■□□ 2.61
TRIM35Q9UPQ4 ANKS3-204ENST00000585773 1946 ntTSL 2 BASIC31.32■■■□□ 2.6
TRIM35Q9UPQ4 PAOX-206ENST00000480071 1324 ntTSL 1 (best) BASIC31.32■■■□□ 2.6
TRIM35Q9UPQ4 BEX3-202ENST00000372634 753 ntTSL 2 BASIC31.32■■■□□ 2.6
TRIM35Q9UPQ4 H2AFY-204ENST00000423969 924 ntTSL 2 BASIC31.32■■■□□ 2.6
TRIM35Q9UPQ4 LONRF2P2-201ENST00000439212 571 ntBASIC31.32■■■□□ 2.6
TRIM35Q9UPQ4 SLC39A3-201ENST00000269740 1502 ntAPPRIS P1 TSL 1 (best) BASIC31.32■■■□□ 2.6
TRIM35Q9UPQ4 GTPBP3-202ENST00000358792 1951 ntAPPRIS P4 TSL 2 BASIC31.32■■■□□ 2.6
TRIM35Q9UPQ4 HMX2-201ENST00000339992 1628 ntAPPRIS P1 TSL 1 (best) BASIC31.31■■■□□ 2.6
TRIM35Q9UPQ4 MTERF3-204ENST00000523821 1529 ntTSL 1 (best) BASIC31.31■■■□□ 2.6
TRIM35Q9UPQ4 METTL24-201ENST00000338882 1119 ntAPPRIS P1 TSL 5 BASIC31.31■■■□□ 2.6
TRIM35Q9UPQ4 HERC2P9-201ENST00000507787 1023 ntTSL 1 (best) BASIC31.31■■■□□ 2.6
TRIM35Q9UPQ4 FGF22-202ENST00000586042 1288 ntTSL 1 (best) BASIC31.31■■■□□ 2.6
TRIM35Q9UPQ4 SLC16A11-202ENST00000447225 1779 ntAPPRIS ALT2 TSL 5 BASIC31.3■■■□□ 2.6
TRIM35Q9UPQ4 MYDGF-201ENST00000262947 1018 ntAPPRIS P1 TSL 1 (best) BASIC31.3■■■□□ 2.6
TRIM35Q9UPQ4 P2RY2-202ENST00000393596 2174 ntAPPRIS P1 TSL 1 (best) BASIC31.3■■■□□ 2.6
TRIM35Q9UPQ4 RFWD2-201ENST00000308769 2124 ntTSL 1 (best) BASIC31.3■■■□□ 2.6
TRIM35Q9UPQ4 RINL-202ENST00000591812 1910 ntAPPRIS ALT2 TSL 2 BASIC31.3■■■□□ 2.6
TRIM35Q9UPQ4 CEND1-201ENST00000330106 1649 ntAPPRIS P1 TSL 1 (best) BASIC31.29■■■□□ 2.6
TRIM35Q9UPQ4 KRT18P10-201ENST00000388836 1287 ntBASIC31.29■■■□□ 2.6
TRIM35Q9UPQ4 MDK-206ENST00000407067 1026 ntAPPRIS P2 TSL 1 (best) BASIC31.29■■■□□ 2.6
TRIM35Q9UPQ4 REEP6-201ENST00000233596 1794 ntAPPRIS P2 TSL 1 (best) BASIC31.29■■■□□ 2.6
TRIM35Q9UPQ4 TSPAN13-201ENST00000262067 2093 ntAPPRIS P1 TSL 1 (best) BASIC31.29■■■□□ 2.6
TRIM35Q9UPQ4 IDNK-201ENST00000376417 511 ntTSL 5 BASIC31.28■■■□□ 2.6
TRIM35Q9UPQ4 IDNK-202ENST00000376419 692 ntAPPRIS P1 TSL 1 (best) BASIC31.28■■■□□ 2.6
TRIM35Q9UPQ4 JMJD8-201ENST00000412368 2038 ntAPPRIS P2 TSL 1 (best) BASIC31.27■■■□□ 2.6
TRIM35Q9UPQ4 MPST-203ENST00000401419 1345 ntAPPRIS P1 TSL 1 (best) BASIC31.27■■■□□ 2.6
TRIM35Q9UPQ4 MEIS3-204ENST00000558555 1715 ntAPPRIS ALT2 TSL 5 BASIC31.27■■■□□ 2.6
TRIM35Q9UPQ4 CCNJL-201ENST00000257536 1848 ntAPPRIS P1 TSL 2 BASIC31.27■■■□□ 2.6
TRIM35Q9UPQ4 NAXE-203ENST00000368235 1125 ntAPPRIS P1 TSL 1 (best) BASIC31.27■■■□□ 2.6
TRIM35Q9UPQ4 AC139795.1-202ENST00000500444 432 ntBASIC31.27■■■□□ 2.6
TRIM35Q9UPQ4 TSPOAP1-AS1-205ENST00000580022 2337 ntTSL 2 BASIC31.27■■■□□ 2.6
TRIM35Q9UPQ4 AQP10-201ENST00000324978 1791 ntAPPRIS P1 TSL 1 (best) BASIC31.27■■■□□ 2.6
TRIM35Q9UPQ4 AC145124.1-201ENST00000528514 1361 ntTSL 2 BASIC31.27■■■□□ 2.6
TRIM35Q9UPQ4 CHST13-201ENST00000319340 1789 ntAPPRIS P1 TSL 1 (best) BASIC31.26■■■□□ 2.59
TRIM35Q9UPQ4 AC009511.2-201ENST00000545904 679 ntTSL 2 BASIC31.26■■■□□ 2.59
TRIM35Q9UPQ4 BHLHE23-202ENST00000612929 1109 ntBASIC31.26■■■□□ 2.59
TRIM35Q9UPQ4 PLBD2-202ENST00000545182 2321 ntTSL 2 BASIC31.26■■■□□ 2.59
TRIM35Q9UPQ4 AL022341.2-201ENST00000573609 1417 ntTSL 3 BASIC31.25■■■□□ 2.59
TRIM35Q9UPQ4 HYI-210ENST00000486909 905 ntTSL 5 BASIC31.25■■■□□ 2.59
TRIM35Q9UPQ4 AC074183.2-201ENST00000623112 922 ntBASIC31.25■■■□□ 2.59
TRIM35Q9UPQ4 PAOX-203ENST00000357296 1633 ntTSL 1 (best) BASIC31.24■■■□□ 2.59
TRIM35Q9UPQ4 EPCAM-201ENST00000263735 1724 ntAPPRIS P1 TSL 1 (best) BASIC31.24■■■□□ 2.59
TRIM35Q9UPQ4 TMEM104-205ENST00000582773 1740 ntTSL 2 BASIC31.24■■■□□ 2.59
TRIM35Q9UPQ4 TMIE-201ENST00000326431 1824 ntAPPRIS P1 TSL 1 (best) BASIC31.24■■■□□ 2.59
TRIM35Q9UPQ4 AC103834.1-201ENST00000520383 144 ntBASIC31.24■■■□□ 2.59
TRIM35Q9UPQ4 OXLD1-203ENST00000571503 803 ntTSL 2 BASIC31.24■■■□□ 2.59
TRIM35Q9UPQ4 AC019171.1-201ENST00000601251 1056 ntBASIC31.24■■■□□ 2.59
TRIM35Q9UPQ4 CREM-210ENST00000374721 2020 ntTSL 5 BASIC31.24■■■□□ 2.59
TRIM35Q9UPQ4 CCDC106-202ENST00000586790 2162 ntAPPRIS P1 TSL 1 (best) BASIC31.23■■■□□ 2.59
TRIM35Q9UPQ4 AC097639.1-201ENST00000565519 1891 ntBASIC31.23■■■□□ 2.59
TRIM35Q9UPQ4 MLST8-219ENST00000565250 1588 ntAPPRIS P3 TSL 3 BASIC31.23■■■□□ 2.59
TRIM35Q9UPQ4 GALR2-201ENST00000329003 1364 ntAPPRIS P1 TSL 1 (best) BASIC31.23■■■□□ 2.59
TRIM35Q9UPQ4 CPNE1-202ENST00000352393 2147 ntAPPRIS P1 TSL 1 (best) BASIC31.23■■■□□ 2.59
TRIM35Q9UPQ4 HAGHL-205ENST00000561546 1041 ntTSL 2 BASIC31.23■■■□□ 2.59
TRIM35Q9UPQ4 FXYD7-204ENST00000588265 636 ntTSL 2 BASIC31.23■■■□□ 2.59
TRIM35Q9UPQ4 CENPVL1-201ENST00000602548 1620 ntAPPRIS P1 BASIC31.23■■■□□ 2.59
TRIM35Q9UPQ4 CENPVL2-201ENST00000634648 1620 ntAPPRIS P1 BASIC31.23■■■□□ 2.59
TRIM35Q9UPQ4 PLEK2-201ENST00000216446 1549 ntAPPRIS P1 TSL 1 (best) BASIC31.22■■■□□ 2.59
TRIM35Q9UPQ4 CAPNS1-216ENST00000628306 1389 ntTSL 5 BASIC31.21■■■□□ 2.59
TRIM35Q9UPQ4 VSTM2A-202ENST00000402613 1076 ntTSL 2 BASIC31.21■■■□□ 2.59
TRIM35Q9UPQ4 FAM136A-202ENST00000430566 885 ntTSL 3 BASIC31.21■■■□□ 2.59
TRIM35Q9UPQ4 MTX2-204ENST00000443241 799 ntTSL 3 BASIC31.21■■■□□ 2.59
TRIM35Q9UPQ4 RASGRP2-204ENST00000377487 642 ntTSL 2 BASIC31.2■■■□□ 2.59
TRIM35Q9UPQ4 AC053527.1-201ENST00000502790 685 ntTSL 3 BASIC31.2■■■□□ 2.59
TRIM35Q9UPQ4 AC018413.1-201ENST00000581996 1200 ntTSL 2 BASIC31.2■■■□□ 2.59
TRIM35Q9UPQ4 AC093390.2-201ENST00000638628 1007 ntTSL 5 BASIC31.2■■■□□ 2.59
TRIM35Q9UPQ4 PORCN-203ENST00000359882 1877 ntAPPRIS ALT1 TSL 5 BASIC31.2■■■□□ 2.58
Retrieved 100 of 98,524 protein–RNA pairs in 92.7 ms