Protein–RNA interactions for Protein: Q96NR3

PTCHD1, Patched domain-containing protein 1, humanhuman

Predictions only

Length 888 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PTCHD1Q96NR3 C1QTNF1-206ENST00000579760 1672 ntAPPRIS P1 TSL 1 (best) BASIC22.52■■□□□ 1.2
PTCHD1Q96NR3 BAMBI-201ENST00000375533 1877 ntAPPRIS P1 TSL 1 (best) BASIC22.51■■□□□ 1.19
PTCHD1Q96NR3 TMEM203-201ENST00000343666 1557 ntAPPRIS P1 BASIC22.51■■□□□ 1.19
PTCHD1Q96NR3 PHF23-212ENST00000576955 1944 ntTSL 2 BASIC22.51■■□□□ 1.19
PTCHD1Q96NR3 RPS2P7-201ENST00000447334 885 ntBASIC22.51■■□□□ 1.19
PTCHD1Q96NR3 HERC2P9-201ENST00000507787 1023 ntTSL 1 (best) BASIC22.51■■□□□ 1.19
PTCHD1Q96NR3 AC116025.2-201ENST00000576632 443 ntTSL 3 BASIC22.51■■□□□ 1.19
PTCHD1Q96NR3 AC064853.2-201ENST00000641246 144 ntAPPRIS P1 BASIC22.51■■□□□ 1.19
PTCHD1Q96NR3 ARMC10-205ENST00000428183 2445 ntTSL 1 (best) BASIC22.51■■□□□ 1.19
PTCHD1Q96NR3 TMEM125-202ENST00000439858 1786 ntAPPRIS P1 TSL 2 BASIC22.5■■□□□ 1.19
PTCHD1Q96NR3 BICDL2-203ENST00000572449 1984 ntAPPRIS P1 TSL 5 BASIC22.5■■□□□ 1.19
PTCHD1Q96NR3 PFDN2-201ENST00000368010 677 ntAPPRIS P1 TSL 1 (best) BASIC22.5■■□□□ 1.19
PTCHD1Q96NR3 BIN1-211ENST00000409400 2143 ntTSL 1 (best) BASIC22.5■■□□□ 1.19
PTCHD1Q96NR3 LMAN2-208ENST00000515209 1149 ntAPPRIS ALT2 TSL 3 BASIC22.5■■□□□ 1.19
PTCHD1Q96NR3 ACOT1-202ENST00000557556 1271 ntTSL 1 (best) BASIC22.5■■□□□ 1.19
PTCHD1Q96NR3 CFAP99-207ENST00000635017 2298 ntTSL 5 BASIC22.5■■□□□ 1.19
PTCHD1Q96NR3 USP2-204ENST00000525735 1704 ntAPPRIS ALT1 TSL 1 (best) BASIC22.49■■□□□ 1.19
PTCHD1Q96NR3 FAM98C-202ENST00000343358 1006 ntTSL 1 (best) BASIC22.49■■□□□ 1.19
PTCHD1Q96NR3 AC087393.1-201ENST00000582896 145 ntBASIC22.49■■□□□ 1.19
PTCHD1Q96NR3 CASTOR2-201ENST00000616305 1257 ntAPPRIS P1 TSL 1 (best) BASIC22.49■■□□□ 1.19
PTCHD1Q96NR3 AC074183.2-201ENST00000623112 922 ntBASIC22.49■■□□□ 1.19
PTCHD1Q96NR3 DEDD-212ENST00000545495 2329 ntAPPRIS P1 TSL 3 BASIC22.49■■□□□ 1.19
PTCHD1Q96NR3 DRAM2-211ENST00000539140 1883 ntAPPRIS P1 TSL 1 (best) BASIC22.49■■□□□ 1.19
PTCHD1Q96NR3 PAIP1-208ENST00000514514 1603 ntTSL 5 BASIC22.49■■□□□ 1.19
PTCHD1Q96NR3 JAG2-202ENST00000347004 5720 ntTSL 1 (best) BASIC22.49■■□□□ 1.19
PTCHD1Q96NR3 KRTAP5-5-201ENST00000399676 933 ntAPPRIS P1 BASIC22.48■■□□□ 1.19
PTCHD1Q96NR3 PLA2G10-201ENST00000438167 1000 ntAPPRIS P1 TSL 1 (best) BASIC22.48■■□□□ 1.19
PTCHD1Q96NR3 RHOBTB3-206ENST00000506817 1432 ntTSL 2 BASIC22.48■■□□□ 1.19
PTCHD1Q96NR3 P2RX4-203ENST00000359949 1836 ntTSL 5 BASIC22.47■■□□□ 1.19
PTCHD1Q96NR3 DLX2-202ENST00000466293 1852 ntTSL 2 BASIC22.47■■□□□ 1.19
PTCHD1Q96NR3 RDH14-201ENST00000381249 1587 ntAPPRIS P1 TSL 1 (best) BASIC22.47■■□□□ 1.19
PTCHD1Q96NR3 TMEM185A-207ENST00000600449 2840 ntAPPRIS P1 TSL 1 (best) BASIC22.47■■□□□ 1.19
PTCHD1Q96NR3 SNAI3-AS1-204ENST00000567997 2048 ntBASIC22.47■■□□□ 1.19
PTCHD1Q96NR3 ZNF263-204ENST00000573578 1636 ntTSL 5 BASIC22.47■■□□□ 1.19
PTCHD1Q96NR3 PROSER2-202ENST00000379200 1232 ntAPPRIS ALT2 BASIC22.47■■□□□ 1.19
PTCHD1Q96NR3 AC010980.1-201ENST00000587192 1142 ntBASIC22.47■■□□□ 1.19
PTCHD1Q96NR3 SEC11C-204ENST00000587834 1202 ntAPPRIS P1 TSL 1 (best) BASIC22.47■■□□□ 1.19
PTCHD1Q96NR3 CLPTM1L-201ENST00000320895 2500 ntAPPRIS P1 TSL 1 (best) BASIC22.47■■□□□ 1.19
PTCHD1Q96NR3 TWF2-201ENST00000305533 1718 ntAPPRIS P1 TSL 1 (best) BASIC22.46■■□□□ 1.19
PTCHD1Q96NR3 KAZALD1-201ENST00000370200 1913 ntAPPRIS P1 TSL 1 (best) BASIC22.46■■□□□ 1.19
PTCHD1Q96NR3 SLC52A2-208ENST00000527078 1790 ntAPPRIS P1 TSL 5 BASIC22.45■■□□□ 1.19
PTCHD1Q96NR3 AC010501.1-201ENST00000606270 1962 ntBASIC22.45■■□□□ 1.18
PTCHD1Q96NR3 GSK3A-201ENST00000222330 2188 ntAPPRIS P2 TSL 1 (best) BASIC22.45■■□□□ 1.18
PTCHD1Q96NR3 ACSS1-202ENST00000376726 2244 ntTSL 2 BASIC22.45■■□□□ 1.18
PTCHD1Q96NR3 MPST-203ENST00000401419 1345 ntAPPRIS P1 TSL 1 (best) BASIC22.45■■□□□ 1.18
PTCHD1Q96NR3 RBFOX2-209ENST00000438146 1356 ntAPPRIS P3 TSL 1 (best) BASIC22.45■■□□□ 1.18
PTCHD1Q96NR3 TTBK2-205ENST00000567274 1777 ntTSL 5 BASIC22.45■■□□□ 1.18
PTCHD1Q96NR3 EBF4-210ENST00000609451 2012 ntAPPRIS ALT1 TSL 5 BASIC22.45■■□□□ 1.18
PTCHD1Q96NR3 BTBD6-203ENST00000392554 2176 ntAPPRIS P2 TSL 1 (best) BASIC22.45■■□□□ 1.18
PTCHD1Q96NR3 MTERF3-201ENST00000287025 1409 ntAPPRIS P1 TSL 1 (best) BASIC22.44■■□□□ 1.18
PTCHD1Q96NR3 ACSS1-203ENST00000432802 2438 ntTSL 2 BASIC22.44■■□□□ 1.18
PTCHD1Q96NR3 IFNL4-201ENST00000606380 1637 ntAPPRIS P5 TSL 1 (best) BASIC22.43■■□□□ 1.18
PTCHD1Q96NR3 UBE2E3-202ENST00000410062 1570 ntAPPRIS P1 TSL 1 (best) BASIC22.43■■□□□ 1.18
PTCHD1Q96NR3 ZFAND2B-201ENST00000289528 1314 ntAPPRIS P1 TSL 1 (best) BASIC22.43■■□□□ 1.18
PTCHD1Q96NR3 FKBP1B-202ENST00000380991 1010 ntTSL 1 (best) BASIC22.43■■□□□ 1.18
PTCHD1Q96NR3 FGF22-202ENST00000586042 1288 ntTSL 1 (best) BASIC22.43■■□□□ 1.18
PTCHD1Q96NR3 IFFO2-203ENST00000455833 6188 ntAPPRIS P1 TSL 5 BASIC22.43■■□□□ 1.18
PTCHD1Q96NR3 IL15RA-214ENST00000525219 1850 ntAPPRIS ALT2 TSL 1 (best) BASIC22.43■■□□□ 1.18
PTCHD1Q96NR3 PNCK-204ENST00000370150 1612 ntAPPRIS P1 TSL 5 BASIC22.42■■□□□ 1.18
PTCHD1Q96NR3 SYT7-202ENST00000535826 1621 ntTSL 5 BASIC22.42■■□□□ 1.18
PTCHD1Q96NR3 ZNF747-203ENST00000568028 1511 ntAPPRIS P1 TSL 2 BASIC22.42■■□□□ 1.18
PTCHD1Q96NR3 SNHG7-204ENST00000447221 2157 ntTSL 2 BASIC22.42■■□□□ 1.18
PTCHD1Q96NR3 PAOX-206ENST00000480071 1324 ntTSL 1 (best) BASIC22.42■■□□□ 1.18
PTCHD1Q96NR3 GYG2-205ENST00000398806 1956 ntAPPRIS ALT2 TSL 1 (best) BASIC22.42■■□□□ 1.18
PTCHD1Q96NR3 AC096887.2-201ENST00000623443 1957 ntBASIC22.42■■□□□ 1.18
PTCHD1Q96NR3 MDK-206ENST00000407067 1026 ntAPPRIS P2 TSL 1 (best) BASIC22.42■■□□□ 1.18
PTCHD1Q96NR3 GUCD1-207ENST00000447813 895 ntTSL 3 BASIC22.42■■□□□ 1.18
PTCHD1Q96NR3 YRDC-201ENST00000373044 1826 ntAPPRIS P1 TSL 1 (best) BASIC22.42■■□□□ 1.18
PTCHD1Q96NR3 TLE6-201ENST00000246112 2100 ntAPPRIS ALT2 TSL 1 (best) BASIC22.42■■□□□ 1.18
PTCHD1Q96NR3 MTERF3-204ENST00000523821 1529 ntTSL 1 (best) BASIC22.41■■□□□ 1.18
PTCHD1Q96NR3 AL022341.2-201ENST00000573609 1417 ntTSL 3 BASIC22.41■■□□□ 1.18
PTCHD1Q96NR3 MYDGF-201ENST00000262947 1018 ntAPPRIS P1 TSL 1 (best) BASIC22.41■■□□□ 1.18
PTCHD1Q96NR3 H2AFY-204ENST00000423969 924 ntTSL 2 BASIC22.41■■□□□ 1.18
PTCHD1Q96NR3 MTX2-204ENST00000443241 799 ntTSL 3 BASIC22.41■■□□□ 1.18
PTCHD1Q96NR3 C9orf147-202ENST00000457681 561 ntTSL 2 BASIC22.41■■□□□ 1.18
PTCHD1Q96NR3 HECA-201ENST00000367658 5614 ntAPPRIS P1 TSL 1 (best) BASIC22.41■■□□□ 1.18
PTCHD1Q96NR3 MEIS3-204ENST00000558555 1715 ntAPPRIS ALT2 TSL 5 BASIC22.4■■□□□ 1.18
PTCHD1Q96NR3 AC145124.1-201ENST00000528514 1361 ntTSL 2 BASIC22.4■■□□□ 1.18
PTCHD1Q96NR3 BEX3-202ENST00000372634 753 ntTSL 2 BASIC22.4■■□□□ 1.18
PTCHD1Q96NR3 RASGRP2-204ENST00000377487 642 ntTSL 2 BASIC22.4■■□□□ 1.18
PTCHD1Q96NR3 QDPR-202ENST00000428702 1278 ntTSL 2 BASIC22.4■■□□□ 1.18
PTCHD1Q96NR3 TMUB1-202ENST00000392818 1563 ntAPPRIS P1 TSL 1 (best) BASIC22.4■■□□□ 1.18
PTCHD1Q96NR3 SLC39A3-201ENST00000269740 1502 ntAPPRIS P1 TSL 1 (best) BASIC22.4■■□□□ 1.18
PTCHD1Q96NR3 ZDHHC16-206ENST00000370854 1798 ntAPPRIS P4 TSL 1 (best) BASIC22.4■■□□□ 1.18
PTCHD1Q96NR3 RHOF-203ENST00000537171 1485 ntTSL 1 (best) BASIC22.4■■□□□ 1.18
PTCHD1Q96NR3 AC145676.1-201ENST00000514988 2004 ntBASIC22.4■■□□□ 1.18
PTCHD1Q96NR3 TOMM40-203ENST00000426677 1725 ntAPPRIS P2 TSL 1 (best) BASIC22.4■■□□□ 1.18
PTCHD1Q96NR3 GALR2-201ENST00000329003 1364 ntAPPRIS P1 TSL 1 (best) BASIC22.39■■□□□ 1.18
PTCHD1Q96NR3 SHISA5-201ENST00000296444 2369 ntTSL 1 (best) BASIC22.39■■□□□ 1.18
PTCHD1Q96NR3 FXYD7-204ENST00000588265 636 ntTSL 2 BASIC22.39■■□□□ 1.17
PTCHD1Q96NR3 PVT1_1.1-201ENST00000615125 194 ntBASIC22.39■■□□□ 1.17
PTCHD1Q96NR3 MROH6-211ENST00000534459 1789 ntAPPRIS ALT2 TSL 2 BASIC22.39■■□□□ 1.17
PTCHD1Q96NR3 FBXL20-203ENST00000577399 1620 ntTSL 5 BASIC22.39■■□□□ 1.17
PTCHD1Q96NR3 MAPKAP1-207ENST00000394060 1586 ntTSL 1 (best) BASIC22.38■■□□□ 1.17
PTCHD1Q96NR3 PPM1B-202ENST00000345249 1713 ntTSL 1 (best) BASIC22.38■■□□□ 1.17
PTCHD1Q96NR3 LONRF2P2-201ENST00000439212 571 ntBASIC22.38■■□□□ 1.17
PTCHD1Q96NR3 AC009511.2-201ENST00000545904 679 ntTSL 2 BASIC22.38■■□□□ 1.17
PTCHD1Q96NR3 OXLD1-203ENST00000571503 803 ntTSL 2 BASIC22.38■■□□□ 1.17
PTCHD1Q96NR3 RCCD1-203ENST00000555155 1871 ntAPPRIS ALT1 TSL 5 BASIC22.38■■□□□ 1.17
PTCHD1Q96NR3 P2RY2-202ENST00000393596 2174 ntAPPRIS P1 TSL 1 (best) BASIC22.38■■□□□ 1.17
Retrieved 100 of 98,524 protein–RNA pairs in 38.6 ms