Protein–RNA interactions for Protein: Q86TS7

LINC00643, Putative UPF0730 protein encoded by LINC00643, humanhuman

Predictions only

Length 51 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00643Q86TS7 MEIS2-207ENST00000557796 2666 ntTSL 5 BASIC15.06■□□□□ 0
LINC00643Q86TS7 CSNK1G2-201ENST00000255641 2918 ntAPPRIS P1 TSL 1 (best) BASIC15.06■□□□□ 0
LINC00643Q86TS7 ZDHHC16-206ENST00000370854 1798 ntAPPRIS P4 TSL 1 (best) BASIC15.06■□□□□ 0
LINC00643Q86TS7 YWHAZ-205ENST00000395956 2974 ntAPPRIS P1 TSL 1 (best) BASIC15.06■□□□□ 0
LINC00643Q86TS7 AC137767.1-201ENST00000602918 1920 ntBASIC15.05■□□□□ 0
LINC00643Q86TS7 SOX4-201ENST00000244745 5852 ntAPPRIS P1 BASIC15.05■□□□□ 0
LINC00643Q86TS7 SPNS1-207ENST00000565975 1979 ntTSL 1 (best) BASIC15.05■□□□□ 0
LINC00643Q86TS7 CMPK2-202ENST00000404168 2042 ntAPPRIS ALT2 TSL 1 (best) BASIC15.05■□□□□ 0
LINC00643Q86TS7 DOHH-201ENST00000427575 2031 ntAPPRIS P1 TSL 1 (best) BASIC15.05■□□□□ 0
LINC00643Q86TS7 LINC01124-201ENST00000409786 2117 ntBASIC15.05■□□□□ 0
LINC00643Q86TS7 HAS1-202ENST00000540069 2110 ntAPPRIS ALT2 TSL 1 (best) BASIC15.05■□□□□ 0
LINC00643Q86TS7 RAB40B-201ENST00000269347 2189 ntTSL 2 BASIC15.05■□□□□ 0
LINC00643Q86TS7 SHISA7-201ENST00000376325 6033 ntAPPRIS P2 TSL 2 BASIC15.05■□□□□ 0
LINC00643Q86TS7 SAV1-201ENST00000324679 3063 ntAPPRIS P1 TSL 1 (best) BASIC15.05■□□□□ 0
LINC00643Q86TS7 CASKIN1-201ENST00000343516 5759 ntAPPRIS P1 TSL 1 (best) BASIC15.05■□□□□ -0
LINC00643Q86TS7 HNRNPAB-205ENST00000506259 1674 ntAPPRIS ALT2 TSL 1 (best) BASIC15.05■□□□□ -0
LINC00643Q86TS7 ABHD12-202ENST00000376542 1725 ntTSL 1 (best) BASIC15.05■□□□□ -0
LINC00643Q86TS7 C16orf59-202ENST00000483320 1709 ntAPPRIS ALT2 TSL 2 BASIC15.05■□□□□ -0
LINC00643Q86TS7 ACSF2-207ENST00000504392 1881 ntTSL 2 BASIC15.05■□□□□ -0
LINC00643Q86TS7 SCYL2-201ENST00000360820 5779 ntAPPRIS P1 TSL 1 (best) BASIC15.05■□□□□ -0
LINC00643Q86TS7 ARF1-213ENST00000540651 1972 ntAPPRIS P1 TSL 2 BASIC15.05■□□□□ -0
LINC00643Q86TS7 FAM86JP-203ENST00000485843 2012 ntTSL 1 (best) BASIC15.05■□□□□ -0
LINC00643Q86TS7 TRIP13-201ENST00000166345 2672 ntAPPRIS P1 TSL 1 (best) BASIC15.05■□□□□ -0
LINC00643Q86TS7 PDZRN4-202ENST00000402685 3347 ntAPPRIS P1 TSL 2 BASIC15.04■□□□□ -0
LINC00643Q86TS7 MCMBP-202ENST00000369077 2465 ntAPPRIS ALT1 TSL 1 (best) BASIC15.04■□□□□ -0
LINC00643Q86TS7 SLC2A8-203ENST00000373371 2172 ntAPPRIS P1 TSL 1 (best) BASIC15.04■□□□□ -0
LINC00643Q86TS7 PPP2R2C-203ENST00000382599 1807 ntAPPRIS P1 TSL 1 (best) BASIC15.04■□□□□ -0
LINC00643Q86TS7 ACVR1C-201ENST00000243349 8994 ntAPPRIS P1 TSL 1 (best) BASIC15.04■□□□□ -0
LINC00643Q86TS7 NISCH-201ENST00000345716 5238 ntAPPRIS P3 TSL 1 (best) BASIC15.04■□□□□ -0
LINC00643Q86TS7 PDPK1-204ENST00000441549 1729 ntTSL 1 (best) BASIC15.04■□□□□ -0
LINC00643Q86TS7 ZBTB7A-201ENST00000322357 5422 ntAPPRIS P1 TSL 1 (best) BASIC15.04■□□□□ -0
LINC00643Q86TS7 TTC7A-201ENST00000319190 5157 ntAPPRIS P1 TSL 2 BASIC15.04■□□□□ -0
LINC00643Q86TS7 DONSON-201ENST00000303071 2170 ntAPPRIS P1 TSL 1 (best) BASIC15.04■□□□□ -0
LINC00643Q86TS7 ZNF784-201ENST00000325351 2021 ntAPPRIS P1 TSL 1 (best) BASIC15.04■□□□□ -0
LINC00643Q86TS7 WHAMMP2-203ENST00000563942 1603 ntBASIC15.03■□□□□ -0
LINC00643Q86TS7 FAM83H-201ENST00000388913 5654 ntAPPRIS P1 TSL 5 BASIC15.03■□□□□ -0
LINC00643Q86TS7 NKX2-1-201ENST00000354822 2191 ntTSL 1 (best) BASIC15.03■□□□□ -0
LINC00643Q86TS7 RNF165-205ENST00000588679 2904 ntBASIC15.03■□□□□ -0
LINC00643Q86TS7 ZDHHC1-201ENST00000348579 2047 ntAPPRIS P2 TSL 1 (best) BASIC15.03■□□□□ -0
LINC00643Q86TS7 CRHR1-201ENST00000293493 2621 ntTSL 5 BASIC15.03■□□□□ -0
LINC00643Q86TS7 RHBDD2-202ENST00000318622 1878 ntTSL 2 BASIC15.03■□□□□ -0
LINC00643Q86TS7 NHLH1-201ENST00000302101 2563 ntAPPRIS P1 TSL 1 (best) BASIC15.03■□□□□ -0
LINC00643Q86TS7 TMEM200B-201ENST00000420504 2553 ntAPPRIS P1 TSL 1 (best) BASIC15.03■□□□□ -0
LINC00643Q86TS7 MPPED1-203ENST00000443721 2507 ntAPPRIS P1 TSL 2 BASIC15.03■□□□□ -0
LINC00643Q86TS7 EML2-201ENST00000245925 2264 ntAPPRIS P3 TSL 1 (best) BASIC15.03■□□□□ -0
LINC00643Q86TS7 SLC35A3-210ENST00000638371 2298 ntTSL 5 BASIC15.03■□□□□ -0
LINC00643Q86TS7 LZTS3-201ENST00000329152 5257 ntAPPRIS P1 TSL 1 (best) BASIC15.02■□□□□ -0
LINC00643Q86TS7 ANKRD65-203ENST00000454272 1506 ntAPPRIS P1 TSL 5 BASIC15.02■□□□□ -0
LINC00643Q86TS7 AC004980.1-201ENST00000418663 2667 ntTSL 1 (best) BASIC15.02■□□□□ -0
LINC00643Q86TS7 DBP-205ENST00000601104 1489 ntTSL 1 (best) BASIC15.02■□□□□ -0
LINC00643Q86TS7 D2HGDH-201ENST00000321264 2617 ntAPPRIS P1 TSL 1 (best) BASIC15.02■□□□□ -0
LINC00643Q86TS7 SH3GLB2-203ENST00000372564 2982 ntAPPRIS P1 TSL 1 (best) BASIC15.02■□□□□ -0
LINC00643Q86TS7 PLEKHG4-201ENST00000360461 6782 ntAPPRIS P3 TSL 2 BASIC15.02□□□□□ -0.01
LINC00643Q86TS7 NIPSNAP1-201ENST00000216121 2237 ntAPPRIS P1 TSL 1 (best) BASIC15.02□□□□□ -0.01
LINC00643Q86TS7 ZNF664-207ENST00000539644 5108 ntAPPRIS P1 TSL 1 (best) BASIC15.02□□□□□ -0.01
LINC00643Q86TS7 SCLY-201ENST00000254663 2562 ntAPPRIS P1 TSL 1 (best) BASIC15.02□□□□□ -0.01
LINC00643Q86TS7 LDLRAD4-218ENST00000592991 1640 ntTSL 1 (best) BASIC15.02□□□□□ -0.01
LINC00643Q86TS7 APBB3-204ENST00000358580 2020 ntTSL 5 BASIC15.02□□□□□ -0.01
LINC00643Q86TS7 ACTR3B-202ENST00000377776 1566 ntTSL 1 (best) BASIC15.02□□□□□ -0.01
LINC00643Q86TS7 ARHGEF35-201ENST00000378115 2431 ntAPPRIS P1 TSL 1 (best) BASIC15.02□□□□□ -0.01
LINC00643Q86TS7 GJC1-209ENST00000592524 1837 ntAPPRIS P1 TSL 2 BASIC15.01□□□□□ -0.01
LINC00643Q86TS7 UXS1-201ENST00000283148 2099 ntAPPRIS ALT1 TSL 2 BASIC15.01□□□□□ -0.01
LINC00643Q86TS7 WIPI2-204ENST00000404704 1663 ntTSL 5 BASIC15.01□□□□□ -0.01
LINC00643Q86TS7 EFCC1-201ENST00000436022 2691 ntAPPRIS P1 TSL 5 BASIC15.01□□□□□ -0.01
LINC00643Q86TS7 SLC4A4-201ENST00000264485 5852 ntAPPRIS P1 TSL 1 (best) BASIC15.01□□□□□ -0.01
LINC00643Q86TS7 NRXN1-202ENST00000342183 3315 ntTSL 1 (best) BASIC15.01□□□□□ -0.01
LINC00643Q86TS7 SCTR-201ENST00000019103 1865 ntAPPRIS P1 TSL 1 (best) BASIC15.01□□□□□ -0.01
LINC00643Q86TS7 DAZAP1-201ENST00000233078 2160 ntAPPRIS P2 TSL 1 (best) BASIC15.01□□□□□ -0.01
LINC00643Q86TS7 ING1-201ENST00000333219 5119 ntAPPRIS P1 TSL 1 (best) BASIC15.01□□□□□ -0.01
LINC00643Q86TS7 DNAJB11-202ENST00000439351 2398 ntAPPRIS P1 TSL 1 (best) BASIC15□□□□□ -0.01
LINC00643Q86TS7 RASSF7-201ENST00000397582 1731 ntAPPRIS ALT2 TSL 2 BASIC15□□□□□ -0.01
LINC00643Q86TS7 SARDH-203ENST00000371868 2266 ntTSL 2 BASIC15□□□□□ -0.01
LINC00643Q86TS7 UPF3A-201ENST00000351487 2235 ntTSL 1 (best) BASIC15□□□□□ -0.01
LINC00643Q86TS7 RANBP10-202ENST00000448631 2232 ntTSL 2 BASIC15□□□□□ -0.01
LINC00643Q86TS7 RABEP2-201ENST00000357573 2175 ntTSL 1 (best) BASIC15□□□□□ -0.01
LINC00643Q86TS7 EP400NL-214ENST00000641289 2402 ntBASIC15□□□□□ -0.01
LINC00643Q86TS7 ZNF843-201ENST00000315678 2137 ntAPPRIS P2 TSL 2 BASIC15□□□□□ -0.01
LINC00643Q86TS7 YRDC-201ENST00000373044 1826 ntAPPRIS P1 TSL 1 (best) BASIC15□□□□□ -0.01
LINC00643Q86TS7 ANKRD13D-202ENST00000447274 2881 ntTSL 1 (best) BASIC15□□□□□ -0.01
LINC00643Q86TS7 GLRB-203ENST00000509282 1757 ntAPPRIS P1 TSL 1 (best) BASIC15□□□□□ -0.01
LINC00643Q86TS7 MAPK12-211ENST00000622558 1779 ntTSL 1 (best) BASIC15□□□□□ -0.01
LINC00643Q86TS7 PELI3-203ENST00000524466 1671 ntTSL 1 (best) BASIC15□□□□□ -0.01
LINC00643Q86TS7 RPS6KA2-201ENST00000265678 5824 ntAPPRIS P1 TSL 1 (best) BASIC14.99□□□□□ -0.01
LINC00643Q86TS7 ZNF205-202ENST00000382192 2062 ntAPPRIS P1 TSL 1 (best) BASIC14.99□□□□□ -0.01
LINC00643Q86TS7 SMARCD2-201ENST00000225742 1800 ntTSL 1 (best) BASIC14.99□□□□□ -0.01
LINC00643Q86TS7 C4orf19-202ENST00000381980 1943 ntAPPRIS P1 TSL 1 (best) BASIC14.99□□□□□ -0.01
LINC00643Q86TS7 AC009690.3-201ENST00000569547 1902 ntAPPRIS P1 TSL 2 BASIC14.99□□□□□ -0.01
LINC00643Q86TS7 KRT10-201ENST00000269576 2124 ntAPPRIS P1 TSL 1 (best) BASIC14.99□□□□□ -0.01
LINC00643Q86TS7 ABHD8-201ENST00000247706 2090 ntAPPRIS P1 TSL 1 (best) BASIC14.99□□□□□ -0.01
LINC00643Q86TS7 CGREF1-202ENST00000312734 1610 ntAPPRIS P2 TSL 5 BASIC14.99□□□□□ -0.01
LINC00643Q86TS7 LRIG1-201ENST00000273261 5273 ntAPPRIS P1 TSL 1 (best) BASIC14.99□□□□□ -0.01
LINC00643Q86TS7 AC100797.4-201ENST00000631653 1827 ntBASIC14.99□□□□□ -0.01
LINC00643Q86TS7 RAD21-AS1-201ENST00000521487 2010 ntTSL 1 (best) BASIC14.99□□□□□ -0.01
LINC00643Q86TS7 P4HA3-202ENST00000427714 2248 ntTSL 2 BASIC14.98□□□□□ -0.01
LINC00643Q86TS7 ZNF652-202ENST00000430262 4701 ntAPPRIS P1 TSL 1 (best) BASIC14.98□□□□□ -0.01
LINC00643Q86TS7 RHOBTB3-201ENST00000379982 5537 ntAPPRIS P1 TSL 1 (best) BASIC14.98□□□□□ -0.01
LINC00643Q86TS7 IRX4-206ENST00000513692 2391 ntAPPRIS P1 TSL 1 (best) BASIC14.98□□□□□ -0.01
LINC00643Q86TS7 BRPF3-202ENST00000357641 6052 ntAPPRIS P1 TSL 1 (best) BASIC14.98□□□□□ -0.01
LINC00643Q86TS7 NFKBIB-204ENST00000572515 1929 ntTSL 1 (best) BASIC14.98□□□□□ -0.01
LINC00643Q86TS7 CTGF-201ENST00000367976 2339 ntAPPRIS P1 TSL 1 (best) BASIC14.98□□□□□ -0.01
Retrieved 100 of 98,524 protein–RNA pairs in 9.8 ms