Protein–RNA interactions for Protein: Q5M7Z0

RNFT1, E3 ubiquitin-protein ligase RNFT1, humanhuman

Predictions only

Length 435 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RNFT1Q5M7Z0 C9orf47-202ENST00000375850 859 ntAPPRIS ALT2 TSL 3 BASIC21.69■■□□□ 1.06
RNFT1Q5M7Z0 CAMK2N2-201ENST00000296238 1362 ntAPPRIS P1 TSL 1 (best) BASIC21.69■■□□□ 1.06
RNFT1Q5M7Z0 GATA4-207ENST00000532059 1459 ntAPPRIS ALT1 TSL 1 (best) BASIC21.69■■□□□ 1.06
RNFT1Q5M7Z0 HMX2-201ENST00000339992 1628 ntAPPRIS P1 TSL 1 (best) BASIC21.69■■□□□ 1.06
RNFT1Q5M7Z0 CASP9-202ENST00000348549 1621 ntTSL 1 (best) BASIC21.69■■□□□ 1.06
RNFT1Q5M7Z0 REEP6-201ENST00000233596 1794 ntAPPRIS P2 TSL 1 (best) BASIC21.69■■□□□ 1.06
RNFT1Q5M7Z0 NR6A1-203ENST00000416460 1898 ntAPPRIS ALT2 TSL 1 (best) BASIC21.69■■□□□ 1.06
RNFT1Q5M7Z0 SNAI3-AS1-203ENST00000565633 829 ntTSL 5 BASIC21.68■■□□□ 1.06
RNFT1Q5M7Z0 THA1P-201ENST00000590384 1145 ntBASIC21.68■■□□□ 1.06
RNFT1Q5M7Z0 CENPVL1-201ENST00000602548 1620 ntAPPRIS P1 BASIC21.68■■□□□ 1.06
RNFT1Q5M7Z0 CENPVL2-201ENST00000634648 1620 ntAPPRIS P1 BASIC21.68■■□□□ 1.06
RNFT1Q5M7Z0 C19orf47-202ENST00000392035 2126 ntAPPRIS ALT2 TSL 1 (best) BASIC21.68■■□□□ 1.06
RNFT1Q5M7Z0 CTF1-201ENST00000279804 1664 ntAPPRIS P3 TSL 1 (best) BASIC21.67■■□□□ 1.06
RNFT1Q5M7Z0 CLEC2L-201ENST00000422142 1359 ntAPPRIS P2 TSL 3 BASIC21.67■■□□□ 1.06
RNFT1Q5M7Z0 EVA1C-203ENST00000401402 1558 ntTSL 5 BASIC21.66■■□□□ 1.06
RNFT1Q5M7Z0 SLC25A1-202ENST00000451283 1514 ntTSL 2 BASIC21.66■■□□□ 1.06
RNFT1Q5M7Z0 MT1E-201ENST00000306061 704 ntAPPRIS P1 TSL 1 (best) BASIC21.66■■□□□ 1.06
RNFT1Q5M7Z0 ZFAND5-202ENST00000343431 1073 ntAPPRIS P1 TSL 5 BASIC21.66■■□□□ 1.06
RNFT1Q5M7Z0 KRT18P24-201ENST00000344739 1156 ntBASIC21.66■■□□□ 1.06
RNFT1Q5M7Z0 Z92544.1-202ENST00000571933 1220 ntBASIC21.66■■□□□ 1.06
RNFT1Q5M7Z0 AC131212.1-201ENST00000613771 668 ntBASIC21.66■■□□□ 1.06
RNFT1Q5M7Z0 AP003068.2-202ENST00000526623 1662 ntTSL 2 BASIC21.66■■□□□ 1.06
RNFT1Q5M7Z0 RAB3IL1-202ENST00000394836 2284 ntAPPRIS P1 TSL 1 (best) BASIC21.66■■□□□ 1.06
RNFT1Q5M7Z0 SYT7-202ENST00000535826 1621 ntTSL 5 BASIC21.66■■□□□ 1.06
RNFT1Q5M7Z0 CCDC71L-201ENST00000315965 1575 ntAPPRIS ALT2 TSL 5 BASIC21.65■■□□□ 1.06
RNFT1Q5M7Z0 NAXE-202ENST00000368234 901 ntTSL 1 (best) BASIC21.65■■□□□ 1.06
RNFT1Q5M7Z0 AL356441.2-201ENST00000443009 864 ntBASIC21.65■■□□□ 1.06
RNFT1Q5M7Z0 ST20-MTHFS-201ENST00000479961 859 ntAPPRIS P1 TSL 3 BASIC21.65■■□□□ 1.06
RNFT1Q5M7Z0 ZDHHC16-207ENST00000393760 2014 ntAPPRIS P4 TSL 1 (best) BASIC21.65■■□□□ 1.06
RNFT1Q5M7Z0 SLC39A3-201ENST00000269740 1502 ntAPPRIS P1 TSL 1 (best) BASIC21.65■■□□□ 1.06
RNFT1Q5M7Z0 GTF2E2-201ENST00000355904 1762 ntAPPRIS P1 TSL 1 (best) BASIC21.64■■□□□ 1.06
RNFT1Q5M7Z0 SLC52A2-208ENST00000527078 1790 ntAPPRIS P1 TSL 5 BASIC21.64■■□□□ 1.06
RNFT1Q5M7Z0 PKIB-205ENST00000368452 1398 ntAPPRIS P1 TSL 1 (best) BASIC21.64■■□□□ 1.06
RNFT1Q5M7Z0 KCNJ4-201ENST00000303592 2065 ntAPPRIS P1 TSL 1 (best) BASIC21.64■■□□□ 1.05
RNFT1Q5M7Z0 U2AF1-202ENST00000380276 940 ntAPPRIS ALT2 TSL 1 (best) BASIC21.64■■□□□ 1.05
RNFT1Q5M7Z0 AL592295.1-201ENST00000400984 884 ntBASIC21.64■■□□□ 1.05
RNFT1Q5M7Z0 SMUG1-203ENST00000401977 1082 ntAPPRIS P1 TSL 5 BASIC21.64■■□□□ 1.05
RNFT1Q5M7Z0 MYL12B-203ENST00000581193 1249 ntAPPRIS P1 TSL 3 BASIC21.64■■□□□ 1.05
RNFT1Q5M7Z0 FSD1-204ENST00000597590 1634 ntTSL 5 BASIC21.64■■□□□ 1.05
RNFT1Q5M7Z0 FLT1-202ENST00000539099 1911 ntTSL 1 (best) BASIC21.64■■□□□ 1.05
RNFT1Q5M7Z0 IL15RA-214ENST00000525219 1850 ntAPPRIS ALT2 TSL 1 (best) BASIC21.64■■□□□ 1.05
RNFT1Q5M7Z0 CDH24-206ENST00000610348 2037 ntTSL 1 (best) BASIC21.63■■□□□ 1.05
RNFT1Q5M7Z0 FAM162B-201ENST00000368557 1036 ntAPPRIS P1 TSL 1 (best) BASIC21.63■■□□□ 1.05
RNFT1Q5M7Z0 CFAP77-202ENST00000393215 901 ntAPPRIS ALT2 TSL 5 BASIC21.63■■□□□ 1.05
RNFT1Q5M7Z0 ST3GAL6-AS1-203ENST00000488132 769 ntTSL 3 BASIC21.63■■□□□ 1.05
RNFT1Q5M7Z0 AC120024.1-201ENST00000562672 995 ntBASIC21.63■■□□□ 1.05
RNFT1Q5M7Z0 HAUS7-211ENST00000626181 414 ntAPPRIS ALT2 TSL 5 BASIC21.63■■□□□ 1.05
RNFT1Q5M7Z0 CIC-201ENST00000160740 6111 ntAPPRIS ALT1 TSL 5 BASIC21.63■■□□□ 1.05
RNFT1Q5M7Z0 DACT2-202ENST00000366796 2028 ntAPPRIS ALT2 TSL 1 (best) BASIC21.63■■□□□ 1.05
RNFT1Q5M7Z0 UBALD1-206ENST00000590965 1462 ntTSL 2 BASIC21.63■■□□□ 1.05
RNFT1Q5M7Z0 FAAH-201ENST00000243167 2094 ntAPPRIS P1 TSL 1 (best) BASIC21.62■■□□□ 1.05
RNFT1Q5M7Z0 PORCN-202ENST00000355961 1848 ntAPPRIS ALT1 TSL 1 (best) BASIC21.62■■□□□ 1.05
RNFT1Q5M7Z0 ANKS3-203ENST00000450067 2272 ntTSL 5 BASIC21.62■■□□□ 1.05
RNFT1Q5M7Z0 S100A6-201ENST00000368719 665 ntAPPRIS P1 TSL 1 (best) BASIC21.62■■□□□ 1.05
RNFT1Q5M7Z0 EBPL-205ENST00000378284 967 ntTSL 1 (best) BASIC21.62■■□□□ 1.05
RNFT1Q5M7Z0 CREM-229ENST00000474362 1030 ntTSL 2 BASIC21.62■■□□□ 1.05
RNFT1Q5M7Z0 LSM7-204ENST00000587502 575 ntTSL 1 (best) BASIC21.62■■□□□ 1.05
RNFT1Q5M7Z0 GABRA5-203ENST00000400081 2761 ntAPPRIS P1 TSL 5 BASIC21.62■■□□□ 1.05
RNFT1Q5M7Z0 MRPL4-207ENST00000590669 1423 ntTSL 1 (best) BASIC21.62■■□□□ 1.05
RNFT1Q5M7Z0 CACNG6-203ENST00000352529 1635 ntTSL 5 BASIC21.62■■□□□ 1.05
RNFT1Q5M7Z0 YIF1A-201ENST00000359461 943 ntTSL 2 BASIC21.61■■□□□ 1.05
RNFT1Q5M7Z0 YIF1A-203ENST00000376901 1124 ntAPPRIS P1 TSL 1 (best) BASIC21.61■■□□□ 1.05
RNFT1Q5M7Z0 FAM173A-207ENST00000569529 1052 ntAPPRIS P3 TSL 1 (best) BASIC21.61■■□□□ 1.05
RNFT1Q5M7Z0 TMEM203-201ENST00000343666 1557 ntAPPRIS P1 BASIC21.61■■□□□ 1.05
RNFT1Q5M7Z0 TSPAN10-203ENST00000574882 1837 ntAPPRIS P2 TSL 1 (best) BASIC21.6■■□□□ 1.05
RNFT1Q5M7Z0 RNF19B-201ENST00000235150 2334 ntAPPRIS ALT2 TSL 1 (best) BASIC21.6■■□□□ 1.05
RNFT1Q5M7Z0 NDUFA10-204ENST00000407129 699 ntTSL 1 (best) BASIC21.6■■□□□ 1.05
RNFT1Q5M7Z0 FGD5-AS1-204ENST00000430166 1184 ntTSL 2 BASIC21.6■■□□□ 1.05
RNFT1Q5M7Z0 CLIC3-203ENST00000494426 1017 ntAPPRIS P1 TSL 1 (best) BASIC21.6■■□□□ 1.05
RNFT1Q5M7Z0 RBM33-201ENST00000287912 1404 ntTSL 2 BASIC21.6■■□□□ 1.05
RNFT1Q5M7Z0 TOP1MT-208ENST00000519148 1868 ntTSL 2 BASIC21.6■■□□□ 1.05
RNFT1Q5M7Z0 SNAI3-AS1-204ENST00000567997 2048 ntBASIC21.6■■□□□ 1.05
RNFT1Q5M7Z0 HAND2-201ENST00000359562 2780 ntAPPRIS P1 TSL 1 (best) BASIC21.59■■□□□ 1.05
RNFT1Q5M7Z0 AKAP8L-208ENST00000595465 1933 ntTSL 2 BASIC21.59■■□□□ 1.05
RNFT1Q5M7Z0 BSCL2-205ENST00000403550 1693 ntAPPRIS P3 TSL 5 BASIC21.59■■□□□ 1.05
RNFT1Q5M7Z0 FBXO7-206ENST00000452138 1535 ntTSL 2 BASIC21.59■■□□□ 1.05
RNFT1Q5M7Z0 PLSCR3-202ENST00000535512 2067 ntAPPRIS P1 TSL 1 (best) BASIC21.59■■□□□ 1.05
RNFT1Q5M7Z0 C2CD4D-201ENST00000454109 1757 ntAPPRIS P1 TSL 2 BASIC21.59■■□□□ 1.05
RNFT1Q5M7Z0 HMX3-201ENST00000357878 1173 ntAPPRIS P1 TSL 2 BASIC21.58■■□□□ 1.05
RNFT1Q5M7Z0 VSTM2L-201ENST00000373459 831 ntTSL 3 BASIC21.58■■□□□ 1.05
RNFT1Q5M7Z0 AC026785.2-201ENST00000511821 867 ntTSL 2 BASIC21.58■■□□□ 1.05
RNFT1Q5M7Z0 MIR4787-201ENST00000607364 84 ntBASIC21.58■■□□□ 1.05
RNFT1Q5M7Z0 ERO1A-211ENST00000629528 998 ntTSL 5 BASIC21.58■■□□□ 1.05
RNFT1Q5M7Z0 CDC16-211ENST00000628084 2058 ntTSL 5 BASIC21.58■■□□□ 1.05
RNFT1Q5M7Z0 BTBD6-204ENST00000463376 2195 ntAPPRIS ALT2 TSL 2 BASIC21.58■■□□□ 1.04
RNFT1Q5M7Z0 IHH-201ENST00000295731 2023 ntAPPRIS P1 TSL 1 (best) BASIC21.58■■□□□ 1.04
RNFT1Q5M7Z0 TMUB1-203ENST00000462940 1549 ntAPPRIS P1 TSL 1 (best) BASIC21.57■■□□□ 1.04
RNFT1Q5M7Z0 GBX1-201ENST00000297537 1092 ntAPPRIS P1 TSL 1 (best) BASIC21.57■■□□□ 1.04
RNFT1Q5M7Z0 KISS1-201ENST00000367194 709 ntAPPRIS P2 TSL 1 (best) BASIC21.57■■□□□ 1.04
RNFT1Q5M7Z0 BX664725.1-201ENST00000438252 379 ntBASIC21.57■■□□□ 1.04
RNFT1Q5M7Z0 KRT125P-201ENST00000546827 989 ntBASIC21.57■■□□□ 1.04
RNFT1Q5M7Z0 CCER2-201ENST00000571838 1057 ntAPPRIS P2 TSL 5 BASIC21.57■■□□□ 1.04
RNFT1Q5M7Z0 CARM1-202ENST00000344150 2722 ntAPPRIS ALT2 TSL 5 BASIC21.57■■□□□ 1.04
RNFT1Q5M7Z0 TNIP2-201ENST00000315423 1974 ntAPPRIS P3 TSL 1 (best) BASIC21.57■■□□□ 1.04
RNFT1Q5M7Z0 DHFR-203ENST00000505337 1719 ntAPPRIS P1 TSL 2 BASIC21.57■■□□□ 1.04
RNFT1Q5M7Z0 HTRA2-202ENST00000352222 1450 ntTSL 1 (best) BASIC21.57■■□□□ 1.04
RNFT1Q5M7Z0 FAM107A-203ENST00000447756 1432 ntTSL 1 (best) BASIC21.56■■□□□ 1.04
RNFT1Q5M7Z0 BRI3-201ENST00000297290 780 ntAPPRIS P1 TSL 1 (best) BASIC21.56■■□□□ 1.04
RNFT1Q5M7Z0 PRELID1-201ENST00000303204 1261 ntAPPRIS P1 TSL 1 (best) BASIC21.56■■□□□ 1.04
RNFT1Q5M7Z0 CHKB-AS1-201ENST00000380711 578 ntTSL 2 BASIC21.56■■□□□ 1.04
Retrieved 100 of 98,524 protein–RNA pairs in 45.9 ms