Protein–RNA interactions for Protein: P34223

SHP1, UBX domain-containing protein 1, yeastyeast

Predictions only

Length 423 aa.

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Protein RNA Prediction (catRAPID) Interaction (RIP-Chip)
Gene UniProt Accession Gene Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score Detected Interaction
SHP1P34223 GYP8YFL027C 1494 nt6.44□□□□□ -1.38
SHP1P34223 SUP19tS(UGA)E 82 nt6.43□□□□□ -1.38
SHP1P34223 SUP17tS(UGA)I 82 nt6.43□□□□□ -1.38
SHP1P34223 SUP16tS(UGA)P 82 nt6.43□□□□□ -1.38
SHP1P34223 DUS4YLR405W 1104 nt6.43□□□□□ -1.38
SHP1P34223 ATG17YLR423C 1254 nt6.43□□□□□ -1.38
SHP1P34223 UBP13YBL067C 2244 nt6.43□□□□□ -1.38
SHP1P34223 ECM30YLR436C 3825 nt6.43□□□□□ -1.38
SHP1P34223 ARP3YJR065C 1350 nt6.43□□□□□ -1.38
SHP1P34223 MCM3YEL032W 2916 nt6.43□□□□□ -1.38
SHP1P34223 FRS2YFL022C 1512 nt6.42□□□□□ -1.38
SHP1P34223 YDR154CYDR154C 351 nt6.42□□□□□ -1.38
SHP1P34223 AI5_BETAQ0075 1065 nt6.42□□□□□ -1.38
SHP1P34223 SEC13YLR208W 894 nt6.42□□□□□ -1.38
SHP1P34223 MRPL36YBR122C 534 nt6.42□□□□□ -1.38
SHP1P34223 GIT1YCR098C 1557 nt6.42□□□□□ -1.38
SHP1P34223 TEP1YNL128W 1305 nt6.42□□□□□ -1.38
SHP1P34223 GPB2YAL056W 2643 nt6.42□□□□□ -1.38
SHP1P34223 ORC5YNL261W 1440 nt6.42□□□□□ -1.38
SHP1P34223 YCL065WYCL065W 369 nt6.41□□□□□ -1.38
SHP1P34223 ARP2YDL029W 1176 nt6.41□□□□□ -1.38
SHP1P34223 YRA1YDR381W 681 nt6.41□□□□□ -1.38
SHP1P34223 RPT3YDR394W 1287 nt6.41□□□□□ -1.38
SHP1P34223 GLN1YPR035W 1113 nt6.41□□□□□ -1.38
SHP1P34223 QNS1YHR074W 2145 nt6.41□□□□□ -1.38
SHP1P34223 ASN2YGR124W 1719 nt6.4□□□□□ -1.38
SHP1P34223 BNS1YGR230W 414 nt6.4□□□□□ -1.38
SHP1P34223 SMK1YPR054W 1167 nt6.4□□□□□ -1.38
SHP1P34223 SHM1YBR263W 1473 nt6.4□□□□□ -1.39
SHP1P34223 DJP1YIR004W 1299 nt6.39□□□□□ -1.39
SHP1P34223 KTR3YBR205W 1215 nt6.39□□□□□ -1.39
SHP1P34223 PET112YBL080C 1626 nt6.39□□□□□ -1.39
SHP1P34223 YEA6YEL006W 1008 nt6.38□□□□□ -1.39
SHP1P34223 MLC1YGL106W 450 nt6.38□□□□□ -1.39
SHP1P34223 LDB18YLL049W 540 nt6.38□□□□□ -1.39
SHP1P34223 YOR300WYOR300W 309 nt6.38□□□□□ -1.39
SHP1P34223 TEA1YOR337W 2280 nt6.37□□□□□ -1.39
SHP1P34223 GLE1YDL207W 1617 nt6.37□□□□□ -1.39
SHP1P34223 YFL064CYFL064C 525 nt6.37□□□□□ -1.39
SHP1P34223 VMA16YHR026W 642 nt6.37□□□□□ -1.39
SHP1P34223 MEU1YLR017W 1014 nt6.37□□□□□ -1.39
SHP1P34223 CAR1YPL111W 1002 nt6.37□□□□□ -1.39
SHP1P34223 YPR202WYPR202W 717 nt6.37□□□□□ -1.39
SHP1P34223 VRP1YLR337C 2454 nt6.36□□□□□ -1.39
SHP1P34223 AMD1YML035C 2433 nt6.36□□□□□ -1.39
SHP1P34223 KNH1YDL049C 807 nt6.36□□□□□ -1.39
SHP1P34223 APS3YJL024C 585 nt6.36□□□□□ -1.39
SHP1P34223 YOS9YDR057W 1629 nt6.36□□□□□ -1.39
SHP1P34223 YHC3YJL059W 1227 nt6.35□□□□□ -1.39
SHP1P34223 MRPL13YKR006C 795 nt6.35□□□□□ -1.39
SHP1P34223 MOD5YOR274W 1287 nt6.35□□□□□ -1.39
SHP1P34223 ATO3YDR384C 828 nt6.34□□□□□ -1.39
SHP1P34223 SEC20YDR498C 1152 nt6.34□□□□□ -1.39
SHP1P34223 ERI1YPL096C-A 207 nt6.34□□□□□ -1.39
SHP1P34223 PNP1YLR209C 936 nt6.33□□□□□ -1.4
SHP1P34223 YBR230W-AYBR230W-A 201 nt6.33□□□□□ -1.4
SHP1P34223 CIT3YPR001W 1461 nt6.33□□□□□ -1.4
SHP1P34223 ADE13YLR359W 1449 nt6.33□□□□□ -1.4
SHP1P34223 PRP46YPL151C 1356 nt6.32□□□□□ -1.4
SHP1P34223 VMA2YBR127C 1554 nt6.32□□□□□ -1.4
SHP1P34223 YML082WYML082W 1950 nt6.32□□□□□ -1.4
SHP1P34223 YAP1801YHR161C 1914 nt6.32□□□□□ -1.4
SHP1P34223 SNU71YGR013W 1863 nt6.32□□□□□ -1.4
SHP1P34223 PDR18YNR070W 4002 nt6.32□□□□□ -1.4
SHP1P34223 YDL057WYDL057W 987 nt6.31□□□□□ -1.4
SHP1P34223 YML083CYML083C 1257 nt6.31□□□□□ -1.4
SHP1P34223 RRN10YBL025W 438 nt6.31□□□□□ -1.4
SHP1P34223 DAL82YNL314W 768 nt6.31□□□□□ -1.4
SHP1P34223 BIM1YER016W 1035 nt6.3□□□□□ -1.4
SHP1P34223 YGR176WYGR176W 348 nt6.3□□□□□ -1.4
SHP1P34223 YCL041CYCL041C 495 nt6.3□□□□□ -1.4
SHP1P34223 PKC1YBL105C 3456 nt6.3□□□□□ -1.4
SHP1P34223 RAD3YER171W 2337 nt6.3□□□□□ -1.4
SHP1P34223 HIS7YBR248C 1659 nt6.3□□□□□ -1.4
SHP1P34223 MRPL1YDR116C 858 nt6.29□□□□□ -1.4
SHP1P34223 GIR2YDR152W 798 nt6.29□□□□□ -1.4
SHP1P34223 LYS12YIL094C 1116 nt6.29□□□□□ -1.4
SHP1P34223 ERG3YLR056W 1098 nt6.29□□□□□ -1.4
SHP1P34223 YNR040WYNR040W 771 nt6.29□□□□□ -1.4
SHP1P34223 EHD3YDR036C 1503 nt6.29□□□□□ -1.4
SHP1P34223 SKY1YMR216C 2229 nt6.28□□□□□ -1.4
SHP1P34223 PRM10YJL108C 1152 nt6.28□□□□□ -1.4
SHP1P34223 TPK1YJL164C 1194 nt6.28□□□□□ -1.4
SHP1P34223 YJU3YKL094W 942 nt6.28□□□□□ -1.4
SHP1P34223 CSG2YBR036C 1233 nt6.28□□□□□ -1.4
SHP1P34223 YPL062WYPL062W 405 nt6.28□□□□□ -1.4
SHP1P34223 ARO7YPR060C 771 nt6.28□□□□□ -1.4
SHP1P34223 tN(GUU)CtN(GUU)C 74 nt6.27□□□□□ -1.41
SHP1P34223 tN(GUU)FtN(GUU)F 74 nt6.27□□□□□ -1.41
SHP1P34223 tN(GUU)GtN(GUU)G 74 nt6.27□□□□□ -1.41
SHP1P34223 tN(GUU)KtN(GUU)K 74 nt6.27□□□□□ -1.41
SHP1P34223 tN(GUU)LtN(GUU)L 74 nt6.27□□□□□ -1.41
SHP1P34223 tN(GUU)N1tN(GUU)N1 74 nt6.27□□□□□ -1.41
SHP1P34223 tN(GUU)N2tN(GUU)N2 74 nt6.27□□□□□ -1.41
SHP1P34223 tN(GUU)O1tN(GUU)O1 74 nt6.27□□□□□ -1.41
SHP1P34223 tN(GUU)O2tN(GUU)O2 74 nt6.27□□□□□ -1.41
SHP1P34223 tN(GUU)PtN(GUU)P 74 nt6.27□□□□□ -1.41
SHP1P34223 CTF8YHR191C 402 nt6.27□□□□□ -1.41
SHP1P34223 YJL211CYJL211C 444 nt6.27□□□□□ -1.41
SHP1P34223 HMS2YJR147W 1077 nt6.27□□□□□ -1.41
Retrieved 100 of 7,029 protein–RNA pairs in 16.5 ms