Protein–RNA interactions for Protein: P30531

SLC6A1, Sodium- and chloride-dependent GABA transporter 1, humanhuman

Predictions only

Length 599 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SLC6A1P30531 HGH1-207ENST00000628266 258 ntTSL 5 BASIC20.54■□□□□ 0.88
SLC6A1P30531 C1orf122-202ENST00000373043 2229 ntAPPRIS ALT2 TSL 1 (best) BASIC20.54■□□□□ 0.88
SLC6A1P30531 EPM2A-208ENST00000618445 1694 ntTSL 1 (best) BASIC20.54■□□□□ 0.88
SLC6A1P30531 TMEM102-201ENST00000323206 1973 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
SLC6A1P30531 ZFAND4-205ENST00000374371 2283 ntTSL 5 BASIC20.53■□□□□ 0.88
SLC6A1P30531 HDAC11-206ENST00000405025 576 ntTSL 4 BASIC20.53■□□□□ 0.88
SLC6A1P30531 VEGFA-207ENST00000413642 1197 ntAPPRIS ALT2 TSL 1 (best) BASIC20.53■□□□□ 0.88
SLC6A1P30531 ZNRF2P2-203ENST00000454624 420 ntBASIC20.53■□□□□ 0.88
SLC6A1P30531 PHACTR2-208ENST00000440869 2569 ntAPPRIS ALT2 TSL 2 BASIC20.53■□□□□ 0.88
SLC6A1P30531 ARG2-201ENST00000261783 2045 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
SLC6A1P30531 HSD11B2-201ENST00000326152 1900 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
SLC6A1P30531 BBC3-203ENST00000439096 1838 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
SLC6A1P30531 ECE2-202ENST00000357474 2667 ntTSL 1 (best) BASIC20.52■□□□□ 0.88
SLC6A1P30531 RAB40B-201ENST00000269347 2189 ntTSL 2 BASIC20.52■□□□□ 0.88
SLC6A1P30531 SYNGR3-201ENST00000248121 2051 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.88
SLC6A1P30531 ELOC-206ENST00000520242 1573 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.88
SLC6A1P30531 SLC35D2-202ENST00000375257 889 ntTSL 2 BASIC20.52■□□□□ 0.88
SLC6A1P30531 PDCD2-209ENST00000542896 1082 ntTSL 2 BASIC20.52■□□□□ 0.88
SLC6A1P30531 OLIG2-202ENST00000382357 2578 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.88
SLC6A1P30531 AMH-201ENST00000221496 1821 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.88
SLC6A1P30531 FNTA-201ENST00000302279 1840 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.88
SLC6A1P30531 RGS7-204ENST00000366565 2494 ntAPPRIS P3 TSL 1 (best) BASIC20.52■□□□□ 0.88
SLC6A1P30531 ME2-208ENST00000638937 2471 ntTSL 5 BASIC20.52■□□□□ 0.88
SLC6A1P30531 NECAB2-201ENST00000305202 1608 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.88
SLC6A1P30531 KCNK13-201ENST00000282146 2522 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.87
SLC6A1P30531 DONSON-210ENST00000453626 2332 ntTSL 5 BASIC20.52■□□□□ 0.87
SLC6A1P30531 MFSD5-201ENST00000329548 1760 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
SLC6A1P30531 BIN1-202ENST00000316724 2693 ntAPPRIS P4 TSL 1 (best) BASIC20.51■□□□□ 0.87
SLC6A1P30531 NME2-202ENST00000393190 866 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
SLC6A1P30531 ZNF470-206ENST00000601902 1640 ntTSL 1 (best) BASIC20.51■□□□□ 0.87
SLC6A1P30531 RCCD1-203ENST00000555155 1871 ntAPPRIS ALT1 TSL 5 BASIC20.51■□□□□ 0.87
SLC6A1P30531 HSPBP1-201ENST00000255631 1768 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
SLC6A1P30531 IL17RE-201ENST00000383814 2704 ntAPPRIS P2 TSL 1 (best) BASIC20.51■□□□□ 0.87
SLC6A1P30531 FBXW5-201ENST00000325285 2274 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
SLC6A1P30531 MROH6-210ENST00000533679 1921 ntAPPRIS ALT2 TSL 1 (best) BASIC20.51■□□□□ 0.87
SLC6A1P30531 PRSS56-201ENST00000449534 2157 ntAPPRIS ALT2 TSL 5 BASIC20.51■□□□□ 0.87
SLC6A1P30531 ALDH16A1-203ENST00000540132 2174 ntTSL 2 BASIC20.51■□□□□ 0.87
SLC6A1P30531 PRSS56-203ENST00000617714 2158 ntAPPRIS P2 TSL 5 BASIC20.51■□□□□ 0.87
SLC6A1P30531 SLC25A42-201ENST00000318596 3120 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
SLC6A1P30531 AC096888.1-201ENST00000487097 565 ntTSL 4 BASIC20.5■□□□□ 0.87
SLC6A1P30531 JMJD8-202ENST00000562111 823 ntTSL 2 BASIC20.5■□□□□ 0.87
SLC6A1P30531 NKX6-3-202ENST00000524115 1683 ntTSL 2 BASIC20.5■□□□□ 0.87
SLC6A1P30531 GATA2-AS1-202ENST00000468377 1578 ntTSL 2 BASIC20.5■□□□□ 0.87
SLC6A1P30531 DVL3-201ENST00000313143 5254 ntAPPRIS P1 TSL 1 (best) BASIC20.49■□□□□ 0.87
SLC6A1P30531 DAZAP1-201ENST00000233078 2160 ntAPPRIS P2 TSL 1 (best) BASIC20.49■□□□□ 0.87
SLC6A1P30531 LRRC24-201ENST00000529415 1758 ntAPPRIS P2 TSL 1 (best) BASIC20.49■□□□□ 0.87
SLC6A1P30531 ARHGAP27-207ENST00000528273 2319 ntTSL 1 (best) BASIC20.49■□□□□ 0.87
SLC6A1P30531 RGS19-201ENST00000332298 1510 ntAPPRIS P1 TSL 1 (best) BASIC20.49■□□□□ 0.87
SLC6A1P30531 IQCD-203ENST00000546692 1872 ntTSL 5 BASIC20.49■□□□□ 0.87
SLC6A1P30531 SNX18-201ENST00000326277 2063 ntTSL 2 BASIC20.49■□□□□ 0.87
SLC6A1P30531 RRP9-201ENST00000232888 1578 ntAPPRIS P1 TSL 1 (best) BASIC20.48■□□□□ 0.87
SLC6A1P30531 FAM83D-202ENST00000619850 2361 ntAPPRIS P1 TSL 1 (best) BASIC20.48■□□□□ 0.87
SLC6A1P30531 SLC25A29-202ENST00000392908 2242 ntTSL 2 BASIC20.48■□□□□ 0.87
SLC6A1P30531 HINT2-201ENST00000259667 628 ntAPPRIS P1 TSL 1 (best) BASIC20.48■□□□□ 0.87
SLC6A1P30531 HAS1-201ENST00000222115 2087 ntAPPRIS P3 TSL 1 (best) BASIC20.48■□□□□ 0.87
SLC6A1P30531 AP000802.1-201ENST00000500537 1934 ntTSL 1 (best) BASIC20.48■□□□□ 0.87
SLC6A1P30531 PTPMT1-205ENST00000534775 1611 ntTSL 1 (best) BASIC20.48■□□□□ 0.87
SLC6A1P30531 ST3GAL5-269ENST00000640992 2292 ntAPPRIS ALT2 TSL 5 BASIC20.48■□□□□ 0.87
SLC6A1P30531 KLC3-202ENST00000470402 1820 ntTSL 1 (best) BASIC20.48■□□□□ 0.87
SLC6A1P30531 RBM4B-203ENST00000525754 2339 ntAPPRIS P1 TSL 2 BASIC20.48■□□□□ 0.87
SLC6A1P30531 ST8SIA6-201ENST00000377602 2276 ntAPPRIS P1 TSL 1 (best) BASIC20.47■□□□□ 0.87
SLC6A1P30531 LSM14B-204ENST00000370915 1079 ntTSL 1 (best) BASIC20.47■□□□□ 0.87
SLC6A1P30531 DOCK5-202ENST00000410074 786 ntTSL 2 BASIC20.47■□□□□ 0.87
SLC6A1P30531 AC004837.3-201ENST00000420748 565 ntTSL 4 BASIC20.47■□□□□ 0.87
SLC6A1P30531 FAM86JP-203ENST00000485843 2012 ntTSL 1 (best) BASIC20.47■□□□□ 0.87
SLC6A1P30531 H2AFY-217ENST00000511689 2789 ntAPPRIS P4 TSL 1 (best) BASIC20.47■□□□□ 0.87
SLC6A1P30531 C1QL3-201ENST00000298943 2493 ntAPPRIS P1 TSL 1 (best) BASIC20.47■□□□□ 0.87
SLC6A1P30531 SSBP3-202ENST00000357475 1533 ntTSL 1 (best) BASIC20.47■□□□□ 0.87
SLC6A1P30531 C1QL2-201ENST00000272520 2043 ntAPPRIS P1 TSL 1 (best) BASIC20.46■□□□□ 0.87
SLC6A1P30531 BEST2-204ENST00000553030 2000 ntAPPRIS P1 TSL 5 BASIC20.46■□□□□ 0.87
SLC6A1P30531 LAPTM4B-203ENST00000521545 915 ntAPPRIS P1 TSL 1 (best) BASIC20.46■□□□□ 0.87
SLC6A1P30531 WIPI2-202ENST00000382384 1948 ntTSL 1 (best) BASIC20.46■□□□□ 0.87
SLC6A1P30531 PPAN-202ENST00000393793 1575 ntTSL 5 BASIC20.46■□□□□ 0.87
SLC6A1P30531 KLC1-201ENST00000246489 2294 ntAPPRIS P1 TSL 5 BASIC20.46■□□□□ 0.87
SLC6A1P30531 KLC1-224ENST00000557450 2265 ntTSL 5 BASIC20.46■□□□□ 0.87
SLC6A1P30531 JAG2-202ENST00000347004 5720 ntTSL 1 (best) BASIC20.45■□□□□ 0.86
SLC6A1P30531 CNTFR-201ENST00000351266 1910 ntAPPRIS P1 TSL 1 (best) BASIC20.45■□□□□ 0.86
SLC6A1P30531 NPAS3-201ENST00000346562 5847 ntAPPRIS P3 TSL 1 (best) BASIC20.45■□□□□ 0.86
SLC6A1P30531 CFAP73-201ENST00000335621 1514 ntAPPRIS P1 TSL 5 BASIC20.45■□□□□ 0.86
SLC6A1P30531 GSC-201ENST00000238558 1264 ntAPPRIS P1 TSL 1 (best) BASIC20.45■□□□□ 0.86
SLC6A1P30531 HS3ST6-201ENST00000454677 1273 ntAPPRIS P1 TSL 1 (best) BASIC20.45■□□□□ 0.86
SLC6A1P30531 CCDC149-203ENST00000502801 1079 ntTSL 1 (best) BASIC20.45■□□□□ 0.86
SLC6A1P30531 AC021231.2-201ENST00000594613 730 ntBASIC20.45■□□□□ 0.86
SLC6A1P30531 OVOL2-201ENST00000278780 1555 ntAPPRIS P1 TSL 1 (best) BASIC20.45■□□□□ 0.86
SLC6A1P30531 PEBP1-201ENST00000261313 1697 ntAPPRIS P1 TSL 1 (best) BASIC20.45■□□□□ 0.86
SLC6A1P30531 TMED2-201ENST00000262225 2560 ntAPPRIS P1 TSL 1 (best) BASIC20.44■□□□□ 0.86
SLC6A1P30531 LSR-202ENST00000354900 2105 ntAPPRIS ALT2 TSL 1 (best) BASIC20.44■□□□□ 0.86
SLC6A1P30531 TNFSF12-TNFSF13-201ENST00000293826 1816 ntAPPRIS P1 TSL 1 (best) BASIC20.44■□□□□ 0.86
SLC6A1P30531 TSSK1B-201ENST00000390666 2478 ntAPPRIS P1 BASIC20.44■□□□□ 0.86
SLC6A1P30531 MIR6090-201ENST00000622481 60 ntBASIC20.44■□□□□ 0.86
SLC6A1P30531 AL451007.3-201ENST00000640271 588 ntAPPRIS P1 BASIC20.44■□□□□ 0.86
SLC6A1P30531 ANKS3-204ENST00000585773 1946 ntTSL 2 BASIC20.44■□□□□ 0.86
SLC6A1P30531 PNKP-201ENST00000322344 2041 ntAPPRIS P1 TSL 1 (best) BASIC20.44■□□□□ 0.86
SLC6A1P30531 DOHH-201ENST00000427575 2031 ntAPPRIS P1 TSL 1 (best) BASIC20.44■□□□□ 0.86
SLC6A1P30531 LINGO3-201ENST00000585527 2241 ntAPPRIS P1 BASIC20.43■□□□□ 0.86
SLC6A1P30531 EIF5A-202ENST00000336458 1511 ntAPPRIS P1 TSL 1 (best) BASIC20.43■□□□□ 0.86
SLC6A1P30531 LRRC75A-201ENST00000409083 2656 ntAPPRIS P3 TSL 2 BASIC20.43■□□□□ 0.86
SLC6A1P30531 AC141586.4-201ENST00000624558 1573 ntBASIC20.43■□□□□ 0.86
SLC6A1P30531 DNLZ-201ENST00000371738 724 ntAPPRIS P1 TSL 1 (best) BASIC20.43■□□□□ 0.86
SLC6A1P30531 REEP6-201ENST00000233596 1794 ntAPPRIS P2 TSL 1 (best) BASIC20.43■□□□□ 0.86
Retrieved 100 of 98,524 protein–RNA pairs in 14.2 ms