Protein–RNA interactions for Protein: P02461

COL3A1, Collagen alpha-1(III) chain, humanhuman

Predicted RBP Predictions only

Length 1,466 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL3A1P02461 C5orf38-202ENST00000397835 681 ntAPPRIS ALT2 TSL 5 BASIC32.04■■■□□ 2.72
COL3A1P02461 C1orf232-201ENST00000634842 643 ntAPPRIS P5 TSL 5 BASIC32.04■■■□□ 2.72
COL3A1P02461 MED22-201ENST00000343730 1437 ntAPPRIS P4 TSL 1 (best) BASIC32.04■■■□□ 2.72
COL3A1P02461 TMUB1-202ENST00000392818 1563 ntAPPRIS P1 TSL 1 (best) BASIC32.04■■■□□ 2.72
COL3A1P02461 USP2-204ENST00000525735 1704 ntAPPRIS ALT1 TSL 1 (best) BASIC32.04■■■□□ 2.72
COL3A1P02461 EGFL8-219ENST00000333845 1310 ntAPPRIS P1 TSL 1 (best) BASIC32.04■■■□□ 2.72
COL3A1P02461 BIN1-211ENST00000409400 2143 ntTSL 1 (best) BASIC32.04■■■□□ 2.72
COL3A1P02461 AL451085.2-201ENST00000605085 799 ntBASIC32.03■■■□□ 2.72
COL3A1P02461 AC092803.2-201ENST00000564287 1899 ntBASIC32.03■■■□□ 2.72
COL3A1P02461 PHF23-212ENST00000576955 1944 ntTSL 2 BASIC32.03■■■□□ 2.72
COL3A1P02461 FAM136A-202ENST00000430566 885 ntTSL 3 BASIC32.03■■■□□ 2.72
COL3A1P02461 SLC39A3-201ENST00000269740 1502 ntAPPRIS P1 TSL 1 (best) BASIC32.02■■■□□ 2.72
COL3A1P02461 HMX2-201ENST00000339992 1628 ntAPPRIS P1 TSL 1 (best) BASIC32.02■■■□□ 2.72
COL3A1P02461 IFNL4-201ENST00000606380 1637 ntAPPRIS P5 TSL 1 (best) BASIC32.02■■■□□ 2.72
COL3A1P02461 MLST8-219ENST00000565250 1588 ntAPPRIS P3 TSL 3 BASIC32.01■■■□□ 2.72
COL3A1P02461 KRT8P33-201ENST00000508125 1423 ntBASIC32.01■■■□□ 2.72
COL3A1P02461 SRP68-202ENST00000539137 2386 ntTSL 2 BASIC32.01■■■□□ 2.71
COL3A1P02461 CD63-201ENST00000257857 1070 ntAPPRIS P1 TSL 1 (best) BASIC32.01■■■□□ 2.71
COL3A1P02461 FP236240.1-201ENST00000619537 1116 ntAPPRIS P1 TSL 1 (best) BASIC32.01■■■□□ 2.71
COL3A1P02461 MROH6-211ENST00000534459 1789 ntAPPRIS ALT2 TSL 2 BASIC32.01■■■□□ 2.71
COL3A1P02461 TMEM171-202ENST00000454765 1535 ntAPPRIS P3 TSL 1 (best) BASIC32■■■□□ 2.71
COL3A1P02461 MTX2-204ENST00000443241 799 ntTSL 3 BASIC32■■■□□ 2.71
COL3A1P02461 PRKAR1B-203ENST00000403562 1917 ntAPPRIS P1 TSL 1 (best) BASIC31.99■■■□□ 2.71
COL3A1P02461 IGFBP6-201ENST00000301464 1169 ntAPPRIS P2 TSL 1 (best) BASIC31.99■■■□□ 2.71
COL3A1P02461 CST6-201ENST00000312134 759 ntAPPRIS P1 TSL 1 (best) BASIC31.99■■■□□ 2.71
COL3A1P02461 RFLNA-202ENST00000338359 652 ntAPPRIS P2 TSL 1 (best) BASIC31.99■■■□□ 2.71
COL3A1P02461 SERP2-201ENST00000379179 784 ntAPPRIS P1 TSL 1 (best) BASIC31.99■■■□□ 2.71
COL3A1P02461 BHLHE23-202ENST00000612929 1109 ntBASIC31.99■■■□□ 2.71
COL3A1P02461 RFLNA-205ENST00000546355 2354 ntAPPRIS ALT1 TSL 1 (best) BASIC31.99■■■□□ 2.71
COL3A1P02461 FKBP1A-211ENST00000618612 1518 ntTSL 1 (best) BASIC31.99■■■□□ 2.71
COL3A1P02461 MTMR1-202ENST00000370390 2755 ntAPPRIS P1 TSL 1 (best) BASIC31.98■■■□□ 2.71
COL3A1P02461 PPM1J-201ENST00000309276 1863 ntAPPRIS P1 TSL 1 (best) BASIC31.98■■■□□ 2.71
COL3A1P02461 YRDC-201ENST00000373044 1826 ntAPPRIS P1 TSL 1 (best) BASIC31.98■■■□□ 2.71
COL3A1P02461 ZNF692-201ENST00000306601 1931 ntAPPRIS P3 TSL 1 (best) BASIC31.98■■■□□ 2.71
COL3A1P02461 KRT18P10-201ENST00000388836 1287 ntBASIC31.97■■■□□ 2.71
COL3A1P02461 AC103724.3-201ENST00000564481 992 ntBASIC31.97■■■□□ 2.71
COL3A1P02461 TST-202ENST00000403892 1797 ntAPPRIS P1 TSL 1 (best) BASIC31.97■■■□□ 2.71
COL3A1P02461 SNAI3-AS1-204ENST00000567997 2048 ntBASIC31.97■■■□□ 2.71
COL3A1P02461 ZNF688-203ENST00000563276 1492 ntTSL 2 BASIC31.97■■■□□ 2.71
COL3A1P02461 CENPVL1-201ENST00000602548 1620 ntAPPRIS P1 BASIC31.96■■■□□ 2.71
COL3A1P02461 CENPVL2-201ENST00000634648 1620 ntAPPRIS P1 BASIC31.96■■■□□ 2.71
COL3A1P02461 TMEM203-201ENST00000343666 1557 ntAPPRIS P1 BASIC31.96■■■□□ 2.71
COL3A1P02461 AL022341.2-201ENST00000573609 1417 ntTSL 3 BASIC31.96■■■□□ 2.71
COL3A1P02461 HSPE1-201ENST00000233893 950 ntAPPRIS P1 TSL 1 (best) BASIC31.96■■■□□ 2.71
COL3A1P02461 PKNOX2-AS1-201ENST00000532316 586 ntTSL 3 BASIC31.96■■■□□ 2.71
COL3A1P02461 KAT8-202ENST00000448516 1789 ntTSL 1 (best) BASIC31.95■■■□□ 2.71
COL3A1P02461 CTF1-201ENST00000279804 1664 ntAPPRIS P3 TSL 1 (best) BASIC31.95■■■□□ 2.71
COL3A1P02461 PAOX-203ENST00000357296 1633 ntTSL 1 (best) BASIC31.95■■■□□ 2.71
COL3A1P02461 KLHDC9-203ENST00000392192 1333 ntTSL 1 (best) BASIC31.95■■■□□ 2.71
COL3A1P02461 EGFL8-220ENST00000395512 1312 ntAPPRIS P1 TSL 1 (best) BASIC31.95■■■□□ 2.71
COL3A1P02461 ZNF606-203ENST00000547121 1196 ntTSL 2 BASIC31.95■■■□□ 2.7
COL3A1P02461 AC011448.1-201ENST00000555938 1100 ntAPPRIS P1 TSL 2 BASIC31.95■■■□□ 2.7
COL3A1P02461 SSX2IP-209ENST00000603677 1149 ntTSL 1 (best) BASIC31.95■■■□□ 2.7
COL3A1P02461 TNFSF12-TNFSF13-201ENST00000293826 1816 ntAPPRIS P1 TSL 1 (best) BASIC31.95■■■□□ 2.7
COL3A1P02461 RPUSD1-207ENST00000565809 1918 ntTSL 2 BASIC31.94■■■□□ 2.7
COL3A1P02461 FGD5-AS1-204ENST00000430166 1184 ntTSL 2 BASIC31.94■■■□□ 2.7
COL3A1P02461 BCKDHB-202ENST00000356489 1514 ntAPPRIS P1 TSL 1 (best) BASIC31.94■■■□□ 2.7
COL3A1P02461 MAD2L2-201ENST00000235310 1860 ntAPPRIS P1 TSL 2 BASIC31.94■■■□□ 2.7
COL3A1P02461 CARMIL1-202ENST00000461945 1290 ntTSL 1 (best) BASIC31.93■■■□□ 2.7
COL3A1P02461 FAHD1-204ENST00000615972 757 ntTSL 5 BASIC31.93■■■□□ 2.7
COL3A1P02461 DLX2-202ENST00000466293 1852 ntTSL 2 BASIC31.93■■■□□ 2.7
COL3A1P02461 ABL2-203ENST00000392043 2140 ntTSL 1 (best) BASIC31.93■■■□□ 2.7
COL3A1P02461 GSK3A-201ENST00000222330 2188 ntAPPRIS P2 TSL 1 (best) BASIC31.92■■■□□ 2.7
COL3A1P02461 QDPR-202ENST00000428702 1278 ntTSL 2 BASIC31.92■■■□□ 2.7
COL3A1P02461 CCNJL-201ENST00000257536 1848 ntAPPRIS P1 TSL 2 BASIC31.92■■■□□ 2.7
COL3A1P02461 MAPK9-202ENST00000347470 1509 ntTSL 5 BASIC31.92■■■□□ 2.7
COL3A1P02461 SLC25A1-202ENST00000451283 1514 ntTSL 2 BASIC31.92■■■□□ 2.7
COL3A1P02461 ZDHHC16-206ENST00000370854 1798 ntAPPRIS P4 TSL 1 (best) BASIC31.91■■■□□ 2.7
COL3A1P02461 TMEM125-202ENST00000439858 1786 ntAPPRIS P1 TSL 2 BASIC31.91■■■□□ 2.7
COL3A1P02461 FLJ37453-201ENST00000317122 2473 ntTSL 2 BASIC31.91■■■□□ 2.7
COL3A1P02461 CARNMT1-201ENST00000376830 1012 ntTSL 1 (best) BASIC31.91■■■□□ 2.7
COL3A1P02461 NDEL1-219ENST00000585098 454 ntTSL 3 BASIC31.91■■■□□ 2.7
COL3A1P02461 DUSP8P4-201ENST00000399538 1761 ntBASIC31.91■■■□□ 2.7
COL3A1P02461 SHISA5-201ENST00000296444 2369 ntTSL 1 (best) BASIC31.91■■■□□ 2.7
COL3A1P02461 YPEL1-202ENST00000403503 466 ntTSL 3 BASIC31.91■■■□□ 2.7
COL3A1P02461 CT47A7-201ENST00000434883 1288 ntAPPRIS P1 TSL 2 BASIC31.91■■■□□ 2.7
COL3A1P02461 EPM2A-202ENST00000435470 1278 ntTSL 1 (best) BASIC31.91■■■□□ 2.7
COL3A1P02461 TMPO-AS1-201ENST00000546421 738 ntTSL 5 BASIC31.91■■■□□ 2.7
COL3A1P02461 MMP25-AS1-209ENST00000576250 779 ntTSL 5 BASIC31.91■■■□□ 2.7
COL3A1P02461 AL590094.1-201ENST00000635581 706 ntTSL 2 BASIC31.91■■■□□ 2.7
COL3A1P02461 PLEK2-201ENST00000216446 1549 ntAPPRIS P1 TSL 1 (best) BASIC31.9■■■□□ 2.7
COL3A1P02461 TPI1-210ENST00000613953 1460 ntTSL 1 (best) BASIC31.9■■■□□ 2.7
COL3A1P02461 GYG2-205ENST00000398806 1956 ntAPPRIS ALT2 TSL 1 (best) BASIC31.9■■■□□ 2.7
COL3A1P02461 REEP6-201ENST00000233596 1794 ntAPPRIS P2 TSL 1 (best) BASIC31.9■■■□□ 2.7
COL3A1P02461 C11orf80-204ENST00000525908 2135 ntAPPRIS P3 TSL 2 BASIC31.89■■■□□ 2.7
COL3A1P02461 FBXL20-203ENST00000577399 1620 ntTSL 5 BASIC31.89■■■□□ 2.7
COL3A1P02461 AL355490.1-201ENST00000445808 805 ntTSL 3 BASIC31.89■■■□□ 2.7
COL3A1P02461 MEIS3-204ENST00000558555 1715 ntAPPRIS ALT2 TSL 5 BASIC31.89■■■□□ 2.7
COL3A1P02461 MMP28-203ENST00000612672 1092 ntTSL 1 (best) BASIC31.89■■■□□ 2.7
COL3A1P02461 AC064853.4-201ENST00000641394 363 ntAPPRIS P1 BASIC31.89■■■□□ 2.7
COL3A1P02461 CLEC2L-201ENST00000422142 1359 ntAPPRIS P2 TSL 3 BASIC31.89■■■□□ 2.69
COL3A1P02461 MSANTD2-201ENST00000239614 2495 ntTSL 2 BASIC31.88■■■□□ 2.69
COL3A1P02461 EPCAM-201ENST00000263735 1724 ntAPPRIS P1 TSL 1 (best) BASIC31.88■■■□□ 2.69
COL3A1P02461 FAM162B-201ENST00000368557 1036 ntAPPRIS P1 TSL 1 (best) BASIC31.88■■■□□ 2.69
COL3A1P02461 EME2-205ENST00000568449 1234 ntAPPRIS P1 TSL 1 (best) BASIC31.88■■■□□ 2.69
COL3A1P02461 AC091060.1-201ENST00000623524 1766 ntBASIC31.87■■■□□ 2.69
COL3A1P02461 RAB20-201ENST00000267328 1518 ntAPPRIS P1 TSL 1 (best) BASIC31.87■■■□□ 2.69
COL3A1P02461 CTAG1B-201ENST00000328435 748 ntAPPRIS P1 TSL 1 (best) BASIC31.87■■■□□ 2.69
COL3A1P02461 CTAG1A-202ENST00000599837 748 ntAPPRIS P1 TSL 1 (best) BASIC31.87■■■□□ 2.69
COL3A1P02461 RCCD1-203ENST00000555155 1871 ntAPPRIS ALT1 TSL 5 BASIC31.87■■■□□ 2.69
Retrieved 100 of 98,524 protein–RNA pairs in 126.3 ms