Protein–RNA interactions for Protein: O60840

CACNA1F, Voltage-dependent L-type calcium channel subunit alpha-1F, humanhuman

Predictions only

Length 1,977 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CACNA1FO60840 CTF1-201ENST00000279804 1664 ntAPPRIS P3 TSL 1 (best) BASIC30.52■■■□□ 2.48
CACNA1FO60840 IDNK-201ENST00000376417 511 ntTSL 5 BASIC30.52■■■□□ 2.48
CACNA1FO60840 IDNK-202ENST00000376419 692 ntAPPRIS P1 TSL 1 (best) BASIC30.52■■■□□ 2.48
CACNA1FO60840 AC019171.1-201ENST00000601251 1056 ntBASIC30.52■■■□□ 2.48
CACNA1FO60840 SLC16A11-202ENST00000447225 1779 ntAPPRIS ALT2 TSL 5 BASIC30.51■■■□□ 2.48
CACNA1FO60840 MROH6-211ENST00000534459 1789 ntAPPRIS ALT2 TSL 2 BASIC30.51■■■□□ 2.48
CACNA1FO60840 GYG2-205ENST00000398806 1956 ntAPPRIS ALT2 TSL 1 (best) BASIC30.51■■■□□ 2.47
CACNA1FO60840 RDH14-201ENST00000381249 1587 ntAPPRIS P1 TSL 1 (best) BASIC30.51■■■□□ 2.47
CACNA1FO60840 AC022616.5-201ENST00000518796 181 ntBASIC30.51■■■□□ 2.47
CACNA1FO60840 PEA15-201ENST00000360472 2471 ntAPPRIS P1 TSL 1 (best) BASIC30.51■■■□□ 2.47
CACNA1FO60840 ALG2-203ENST00000476832 1880 ntAPPRIS P1 TSL 1 (best) BASIC30.51■■■□□ 2.47
CACNA1FO60840 AC097639.1-201ENST00000565519 1891 ntBASIC30.51■■■□□ 2.47
CACNA1FO60840 AC103724.3-201ENST00000564481 992 ntBASIC30.5■■■□□ 2.47
CACNA1FO60840 FXYD7-204ENST00000588265 636 ntTSL 2 BASIC30.5■■■□□ 2.47
CACNA1FO60840 TMIE-201ENST00000326431 1824 ntAPPRIS P1 TSL 1 (best) BASIC30.5■■■□□ 2.47
CACNA1FO60840 MRPL23-202ENST00000381519 643 ntAPPRIS P1 TSL 3 BASIC30.5■■■□□ 2.47
CACNA1FO60840 MRPL23-205ENST00000397298 736 ntAPPRIS P1 TSL 1 (best) BASIC30.5■■■□□ 2.47
CACNA1FO60840 KRTAP5-5-201ENST00000399676 933 ntAPPRIS P1 BASIC30.5■■■□□ 2.47
CACNA1FO60840 JMJD8-201ENST00000412368 2038 ntAPPRIS P2 TSL 1 (best) BASIC30.49■■■□□ 2.47
CACNA1FO60840 SYT7-202ENST00000535826 1621 ntTSL 5 BASIC30.49■■■□□ 2.47
CACNA1FO60840 HOXB3-202ENST00000460160 1525 ntTSL 5 BASIC30.49■■■□□ 2.47
CACNA1FO60840 MAPKAP1-207ENST00000394060 1586 ntTSL 1 (best) BASIC30.49■■■□□ 2.47
CACNA1FO60840 MSANTD2-201ENST00000239614 2495 ntTSL 2 BASIC30.49■■■□□ 2.47
CACNA1FO60840 FBXL6-202ENST00000455319 1727 ntAPPRIS ALT2 TSL 1 (best) BASIC30.49■■■□□ 2.47
CACNA1FO60840 KLC1-225ENST00000557575 2188 ntTSL 5 BASIC30.48■■■□□ 2.47
CACNA1FO60840 ZNF263-204ENST00000573578 1636 ntTSL 5 BASIC30.48■■■□□ 2.47
CACNA1FO60840 AC018755.3-202ENST00000596210 929 ntBASIC30.48■■■□□ 2.47
CACNA1FO60840 RFLNA-205ENST00000546355 2354 ntAPPRIS ALT1 TSL 1 (best) BASIC30.48■■■□□ 2.47
CACNA1FO60840 LYL1-201ENST00000264824 1490 ntAPPRIS P1 TSL 1 (best) BASIC30.47■■■□□ 2.47
CACNA1FO60840 FKBP1A-211ENST00000618612 1518 ntTSL 1 (best) BASIC30.47■■■□□ 2.47
CACNA1FO60840 GSK3A-201ENST00000222330 2188 ntAPPRIS P2 TSL 1 (best) BASIC30.47■■■□□ 2.47
CACNA1FO60840 MTERF3-204ENST00000523821 1529 ntTSL 1 (best) BASIC30.46■■■□□ 2.47
CACNA1FO60840 TMEM203-201ENST00000343666 1557 ntAPPRIS P1 BASIC30.46■■■□□ 2.47
CACNA1FO60840 PAOX-203ENST00000357296 1633 ntTSL 1 (best) BASIC30.46■■■□□ 2.47
CACNA1FO60840 ZDHHC16-206ENST00000370854 1798 ntAPPRIS P4 TSL 1 (best) BASIC30.45■■■□□ 2.47
CACNA1FO60840 TST-202ENST00000403892 1797 ntAPPRIS P1 TSL 1 (best) BASIC30.45■■■□□ 2.47
CACNA1FO60840 MED22-201ENST00000343730 1437 ntAPPRIS P4 TSL 1 (best) BASIC30.45■■■□□ 2.47
CACNA1FO60840 FLJ37453-201ENST00000317122 2473 ntTSL 2 BASIC30.45■■■□□ 2.47
CACNA1FO60840 CCNJL-201ENST00000257536 1848 ntAPPRIS P1 TSL 2 BASIC30.45■■■□□ 2.46
CACNA1FO60840 CENPVL1-201ENST00000602548 1620 ntAPPRIS P1 BASIC30.45■■■□□ 2.46
CACNA1FO60840 CENPVL2-201ENST00000634648 1620 ntAPPRIS P1 BASIC30.45■■■□□ 2.46
CACNA1FO60840 GALR2-201ENST00000329003 1364 ntAPPRIS P1 TSL 1 (best) BASIC30.45■■■□□ 2.46
CACNA1FO60840 CREM-210ENST00000374721 2020 ntTSL 5 BASIC30.44■■■□□ 2.46
CACNA1FO60840 AL022341.2-201ENST00000573609 1417 ntTSL 3 BASIC30.44■■■□□ 2.46
CACNA1FO60840 CD63-201ENST00000257857 1070 ntAPPRIS P1 TSL 1 (best) BASIC30.44■■■□□ 2.46
CACNA1FO60840 GPRC5B-202ENST00000535671 1215 ntAPPRIS ALT2 TSL 1 (best) BASIC30.44■■■□□ 2.46
CACNA1FO60840 FAM173A-202ENST00000564000 1088 ntAPPRIS ALT2 TSL 2 BASIC30.44■■■□□ 2.46
CACNA1FO60840 AC091060.1-201ENST00000623524 1766 ntBASIC30.44■■■□□ 2.46
CACNA1FO60840 BTBD6-203ENST00000392554 2176 ntAPPRIS P2 TSL 1 (best) BASIC30.44■■■□□ 2.46
CACNA1FO60840 RAB20-201ENST00000267328 1518 ntAPPRIS P1 TSL 1 (best) BASIC30.44■■■□□ 2.46
CACNA1FO60840 CAPNS1-216ENST00000628306 1389 ntTSL 5 BASIC30.43■■■□□ 2.46
CACNA1FO60840 ANKRD9-204ENST00000559651 1444 ntAPPRIS P1 TSL 1 (best) BASIC30.43■■■□□ 2.46
CACNA1FO60840 NFU1-203ENST00000410022 1467 ntAPPRIS P3 TSL 1 (best) BASIC30.42■■■□□ 2.46
CACNA1FO60840 HOMER3-201ENST00000221222 1384 ntAPPRIS ALT1 TSL 5 BASIC30.42■■■□□ 2.46
CACNA1FO60840 AC018413.1-201ENST00000581996 1200 ntTSL 2 BASIC30.42■■■□□ 2.46
CACNA1FO60840 AC093390.2-201ENST00000638628 1007 ntTSL 5 BASIC30.42■■■□□ 2.46
CACNA1FO60840 ANKS3-204ENST00000585773 1946 ntTSL 2 BASIC30.42■■■□□ 2.46
CACNA1FO60840 SDS-201ENST00000257549 1606 ntAPPRIS P1 TSL 2 BASIC30.42■■■□□ 2.46
CACNA1FO60840 CARNMT1-201ENST00000376830 1012 ntTSL 1 (best) BASIC30.41■■■□□ 2.46
CACNA1FO60840 MAD2L2-201ENST00000235310 1860 ntAPPRIS P1 TSL 2 BASIC30.41■■■□□ 2.46
CACNA1FO60840 ACSS1-202ENST00000376726 2244 ntTSL 2 BASIC30.41■■■□□ 2.46
CACNA1FO60840 IGFBP6-201ENST00000301464 1169 ntAPPRIS P2 TSL 1 (best) BASIC30.41■■■□□ 2.46
CACNA1FO60840 AC064853.4-201ENST00000641394 363 ntAPPRIS P1 BASIC30.41■■■□□ 2.46
CACNA1FO60840 MTERF3-201ENST00000287025 1409 ntAPPRIS P1 TSL 1 (best) BASIC30.41■■■□□ 2.46
CACNA1FO60840 REEP6-201ENST00000233596 1794 ntAPPRIS P2 TSL 1 (best) BASIC30.4■■■□□ 2.46
CACNA1FO60840 PPM1B-202ENST00000345249 1713 ntTSL 1 (best) BASIC30.4■■■□□ 2.46
CACNA1FO60840 OXLD1-203ENST00000571503 803 ntTSL 2 BASIC30.39■■■□□ 2.46
CACNA1FO60840 RINL-202ENST00000591812 1910 ntAPPRIS ALT2 TSL 2 BASIC30.39■■■□□ 2.46
CACNA1FO60840 RCCD1-203ENST00000555155 1871 ntAPPRIS ALT1 TSL 5 BASIC30.39■■■□□ 2.46
CACNA1FO60840 AL355490.1-201ENST00000445808 805 ntTSL 3 BASIC30.39■■■□□ 2.46
CACNA1FO60840 RARRES2P1-201ENST00000474487 481 ntBASIC30.39■■■□□ 2.46
CACNA1FO60840 TNFSF12-TNFSF13-201ENST00000293826 1816 ntAPPRIS P1 TSL 1 (best) BASIC30.38■■■□□ 2.45
CACNA1FO60840 PDPK1-204ENST00000441549 1729 ntTSL 1 (best) BASIC30.38■■■□□ 2.45
CACNA1FO60840 PROSER2-202ENST00000379200 1232 ntAPPRIS ALT2 BASIC30.38■■■□□ 2.45
CACNA1FO60840 MPST-203ENST00000401419 1345 ntAPPRIS P1 TSL 1 (best) BASIC30.38■■■□□ 2.45
CACNA1FO60840 CDCA5-202ENST00000404147 1012 ntTSL 2 BASIC30.37■■■□□ 2.45
CACNA1FO60840 RBFOX2-209ENST00000438146 1356 ntAPPRIS P3 TSL 1 (best) BASIC30.37■■■□□ 2.45
CACNA1FO60840 CCR10-201ENST00000332438 1773 ntAPPRIS P1 TSL 1 (best) BASIC30.37■■■□□ 2.45
CACNA1FO60840 AC010980.1-201ENST00000587192 1142 ntBASIC30.37■■■□□ 2.45
CACNA1FO60840 TMCO6-201ENST00000252100 1834 ntTSL 1 (best) BASIC30.37■■■□□ 2.45
CACNA1FO60840 HMX2-201ENST00000339992 1628 ntAPPRIS P1 TSL 1 (best) BASIC30.37■■■□□ 2.45
CACNA1FO60840 EXOC3-209ENST00000512944 2825 ntAPPRIS P1 TSL 1 (best) BASIC30.37■■■□□ 2.45
CACNA1FO60840 POU2F2-208ENST00000529952 1716 ntAPPRIS ALT2 TSL 1 (best) BASIC30.36■■■□□ 2.45
CACNA1FO60840 C16orf87-201ENST00000285697 1585 ntAPPRIS P1 TSL 1 (best) BASIC30.36■■■□□ 2.45
CACNA1FO60840 AC145124.1-201ENST00000528514 1361 ntTSL 2 BASIC30.36■■■□□ 2.45
CACNA1FO60840 AC078883.1-201ENST00000442417 950 ntTSL 3 BASIC30.35■■■□□ 2.45
CACNA1FO60840 AC010913.1-201ENST00000608612 420 ntTSL 2 BASIC30.35■■■□□ 2.45
CACNA1FO60840 TMEM104-205ENST00000582773 1740 ntTSL 2 BASIC30.35■■■□□ 2.45
CACNA1FO60840 FGF19-201ENST00000294312 2447 ntAPPRIS P1 TSL 1 (best) BASIC30.35■■■□□ 2.45
CACNA1FO60840 AC145676.1-201ENST00000514988 2004 ntBASIC30.35■■■□□ 2.45
CACNA1FO60840 DUSP22-201ENST00000344450 1485 ntTSL 1 (best) BASIC30.35■■■□□ 2.45
CACNA1FO60840 FAHD1-204ENST00000615972 757 ntTSL 5 BASIC30.34■■■□□ 2.45
CACNA1FO60840 CEND1-201ENST00000330106 1649 ntAPPRIS P1 TSL 1 (best) BASIC30.34■■■□□ 2.45
CACNA1FO60840 KAT8-202ENST00000448516 1789 ntTSL 1 (best) BASIC30.34■■■□□ 2.45
CACNA1FO60840 GTPBP3-202ENST00000358792 1951 ntAPPRIS P4 TSL 2 BASIC30.34■■■□□ 2.45
CACNA1FO60840 QDPR-202ENST00000428702 1278 ntTSL 2 BASIC30.34■■■□□ 2.45
CACNA1FO60840 FAM120C-203ENST00000477084 1140 ntAPPRIS ALT2 TSL 1 (best) BASIC30.34■■■□□ 2.45
CACNA1FO60840 ZNF74-204ENST00000405993 1839 ntAPPRIS ALT2 TSL 5 BASIC30.33■■■□□ 2.45
CACNA1FO60840 NAXE-203ENST00000368235 1125 ntAPPRIS P1 TSL 1 (best) BASIC30.33■■■□□ 2.45
CACNA1FO60840 HAGHL-205ENST00000561546 1041 ntTSL 2 BASIC30.33■■■□□ 2.45
Retrieved 100 of 98,524 protein–RNA pairs in 14.9 ms