Protein–RNA interactions for Protein: O43556

SGCE, Epsilon-sarcoglycan, humanhuman

Predictions only

Length 437 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SGCEO43556 CADPS-219ENST00000612439 5455 ntTSL 1 (best) BASIC20.99■□□□□ 0.95
SGCEO43556 ENDOG-201ENST00000372642 1172 ntAPPRIS P1 TSL 1 (best) BASIC20.99■□□□□ 0.95
SGCEO43556 RINL-202ENST00000591812 1910 ntAPPRIS ALT2 TSL 2 BASIC20.99■□□□□ 0.95
SGCEO43556 KRT72-202ENST00000354310 1764 ntTSL 2 BASIC20.99■□□□□ 0.95
SGCEO43556 MAP3K5-201ENST00000359015 5197 ntAPPRIS P1 TSL 1 (best) BASIC20.99■□□□□ 0.95
SGCEO43556 PAPOLA-225ENST00000557471 1421 ntTSL 1 (best) BASIC20.98■□□□□ 0.95
SGCEO43556 AC020928.2-201ENST00000588717 2197 ntBASIC20.98■□□□□ 0.95
SGCEO43556 HSD17B1P1-201ENST00000590052 955 ntBASIC20.98■□□□□ 0.95
SGCEO43556 WDR38-202ENST00000613760 1323 ntAPPRIS ALT2 TSL 1 (best) BASIC20.98■□□□□ 0.95
SGCEO43556 SNX5-201ENST00000377759 2270 ntAPPRIS P1 TSL 1 (best) BASIC20.98■□□□□ 0.95
SGCEO43556 CHST13-201ENST00000319340 1789 ntAPPRIS P1 TSL 1 (best) BASIC20.97■□□□□ 0.95
SGCEO43556 SH3GL1-201ENST00000269886 2516 ntAPPRIS P1 TSL 1 (best) BASIC20.97■□□□□ 0.95
SGCEO43556 REEP6-201ENST00000233596 1794 ntAPPRIS P2 TSL 1 (best) BASIC20.97■□□□□ 0.95
SGCEO43556 CHKA-202ENST00000356135 1755 ntAPPRIS ALT2 TSL 1 (best) BASIC20.97■□□□□ 0.95
SGCEO43556 HNRNPL-201ENST00000221419 2471 ntAPPRIS P1 TSL 1 (best) BASIC20.97■□□□□ 0.95
SGCEO43556 TMEM203-201ENST00000343666 1557 ntAPPRIS P1 BASIC20.97■□□□□ 0.95
SGCEO43556 PORCN-203ENST00000359882 1877 ntAPPRIS ALT1 TSL 5 BASIC20.96■□□□□ 0.95
SGCEO43556 ETS1-201ENST00000319397 2231 ntAPPRIS P1 TSL 1 (best) BASIC20.96■□□□□ 0.95
SGCEO43556 HSBP1L1-201ENST00000451882 771 ntAPPRIS P1 TSL 1 (best) BASIC20.96■□□□□ 0.95
SGCEO43556 AC026202.3-201ENST00000600805 1127 ntBASIC20.96■□□□□ 0.95
SGCEO43556 RAP2CP1-202ENST00000605179 643 ntBASIC20.96■□□□□ 0.95
SGCEO43556 PTPRF-216ENST00000617451 1129 ntTSL 5 BASIC20.96■□□□□ 0.95
SGCEO43556 HAS1-205ENST00000601714 2086 ntTSL 1 (best) BASIC20.96■□□□□ 0.95
SGCEO43556 HSF1-204ENST00000528838 2142 ntAPPRIS P1 TSL 1 (best) BASIC20.96■□□□□ 0.95
SGCEO43556 MAD2L2-201ENST00000235310 1860 ntAPPRIS P1 TSL 2 BASIC20.96■□□□□ 0.95
SGCEO43556 RNASET2-210ENST00000508775 1375 ntAPPRIS P1 TSL 1 (best) BASIC20.96■□□□□ 0.95
SGCEO43556 KLC1-203ENST00000347839 2271 ntTSL 5 BASIC20.95■□□□□ 0.95
SGCEO43556 MBLAC1-201ENST00000398075 1502 ntAPPRIS P1 TSL 1 (best) BASIC20.95■□□□□ 0.94
SGCEO43556 ST7-201ENST00000265437 2899 ntTSL 1 (best) BASIC20.95■□□□□ 0.94
SGCEO43556 RNF19B-202ENST00000356990 2598 ntTSL 1 (best) BASIC20.95■□□□□ 0.94
SGCEO43556 CAPZB-203ENST00000375142 1686 ntAPPRIS ALT1 TSL 5 BASIC20.95■□□□□ 0.94
SGCEO43556 ADSS-201ENST00000366535 2780 ntAPPRIS P1 TSL 1 (best) BASIC20.95■□□□□ 0.94
SGCEO43556 ATG16L2-201ENST00000321297 2243 ntAPPRIS P1 TSL 1 (best) BASIC20.94■□□□□ 0.94
SGCEO43556 GNB1-210ENST00000615252 3048 ntTSL 5 BASIC20.94■□□□□ 0.94
SGCEO43556 ATP5G2-208ENST00000552242 1950 ntAPPRIS P1 TSL 1 (best) BASIC20.94■□□□□ 0.94
SGCEO43556 C8orf58-206ENST00000614574 1955 ntAPPRIS ALT2 TSL 5 BASIC20.94■□□□□ 0.94
SGCEO43556 HAS2-AS1-201ENST00000514180 1656 ntTSL 1 (best) BASIC20.94■□□□□ 0.94
SGCEO43556 SDF2L1-201ENST00000248958 865 ntAPPRIS P1 TSL 1 (best) BASIC20.94■□□□□ 0.94
SGCEO43556 HES4-204ENST00000484667 667 ntTSL 3 BASIC20.94■□□□□ 0.94
SGCEO43556 NPW-202ENST00000566435 991 ntAPPRIS ALT2 TSL 1 (best) BASIC20.94■□□□□ 0.94
SGCEO43556 SPG21-201ENST00000204566 1822 ntAPPRIS P1 TSL 1 (best) BASIC20.94■□□□□ 0.94
SGCEO43556 SIX2-201ENST00000303077 2205 ntAPPRIS P1 TSL 1 (best) BASIC20.93■□□□□ 0.94
SGCEO43556 FKBP8-213ENST00000608443 1849 ntAPPRIS P3 TSL 1 (best) BASIC20.93■□□□□ 0.94
SGCEO43556 GRIN2D-201ENST00000263269 5093 ntAPPRIS P1 TSL 1 (best) BASIC20.93■□□□□ 0.94
SGCEO43556 RARRES2P2-201ENST00000394842 485 ntBASIC20.93■□□□□ 0.94
SGCEO43556 PSMG4-206ENST00000438998 838 ntAPPRIS P1 TSL 2 BASIC20.93■□□□□ 0.94
SGCEO43556 UBE2D2-205ENST00000505548 1113 ntTSL 1 (best) BASIC20.93■□□□□ 0.94
SGCEO43556 ANKS3-204ENST00000585773 1946 ntTSL 2 BASIC20.93■□□□□ 0.94
SGCEO43556 MAZ-203ENST00000545521 2333 ntTSL 1 (best) BASIC20.93■□□□□ 0.94
SGCEO43556 EPCAM-201ENST00000263735 1724 ntAPPRIS P1 TSL 1 (best) BASIC20.92■□□□□ 0.94
SGCEO43556 TST-202ENST00000403892 1797 ntAPPRIS P1 TSL 1 (best) BASIC20.92■□□□□ 0.94
SGCEO43556 GCLC-209ENST00000514004 2356 ntTSL 1 (best) BASIC20.92■□□□□ 0.94
SGCEO43556 ARMC10-204ENST00000425331 2443 ntTSL 2 BASIC20.92■□□□□ 0.94
SGCEO43556 LTK-203ENST00000453182 2412 ntTSL 2 BASIC20.92■□□□□ 0.94
SGCEO43556 DGAT1-201ENST00000332324 1473 ntTSL 5 BASIC20.92■□□□□ 0.94
SGCEO43556 SLC52A2-208ENST00000527078 1790 ntAPPRIS P1 TSL 5 BASIC20.92■□□□□ 0.94
SGCEO43556 AC097639.1-201ENST00000565519 1891 ntBASIC20.92■□□□□ 0.94
SGCEO43556 PRR35-201ENST00000409413 2216 ntAPPRIS P1 TSL 1 (best) BASIC20.92■□□□□ 0.94
SGCEO43556 TSKU-201ENST00000333090 2712 ntAPPRIS P1 TSL 1 (best) BASIC20.91■□□□□ 0.94
SGCEO43556 C11orf95-202ENST00000433688 5716 ntAPPRIS P1 TSL 5 BASIC20.91■□□□□ 0.94
SGCEO43556 CDK2AP1-201ENST00000261692 1625 ntAPPRIS P1 TSL 1 (best) BASIC20.91■□□□□ 0.94
SGCEO43556 UBALD2-201ENST00000327490 1593 ntAPPRIS P1 TSL 1 (best) BASIC20.91■□□□□ 0.94
SGCEO43556 TMEM8B-203ENST00000377996 2473 ntTSL 2 BASIC20.91■□□□□ 0.94
SGCEO43556 BTBD19-201ENST00000409335 1214 ntTSL 5 BASIC20.91■□□□□ 0.94
SGCEO43556 RAD51-210ENST00000557850 1397 ntTSL 2 BASIC20.91■□□□□ 0.94
SGCEO43556 ARRB2-210ENST00000572457 1660 ntTSL 5 BASIC20.91■□□□□ 0.94
SGCEO43556 RUNX2-210ENST00000576263 2256 ntTSL 5 BASIC20.91■□□□□ 0.94
SGCEO43556 AC009831.1-201ENST00000580420 1582 ntBASIC20.91■□□□□ 0.94
SGCEO43556 AC133552.2-201ENST00000619106 1032 ntBASIC20.91■□□□□ 0.94
SGCEO43556 WTAP-207ENST00000631126 1430 ntTSL 3 BASIC20.91■□□□□ 0.94
SGCEO43556 CEBPA-AS1-201ENST00000592982 2198 ntBASIC20.9■□□□□ 0.94
SGCEO43556 NELFB-201ENST00000343053 2698 ntAPPRIS ALT2 TSL 1 (best) BASIC20.9■□□□□ 0.94
SGCEO43556 PTPA-210ENST00000414510 1153 ntTSL 1 (best) BASIC20.9■□□□□ 0.94
SGCEO43556 SLCO3A1-201ENST00000318445 5115 ntAPPRIS P1 TSL 1 (best) BASIC20.9■□□□□ 0.94
SGCEO43556 MEIS3-204ENST00000558555 1715 ntAPPRIS ALT2 TSL 5 BASIC20.9■□□□□ 0.94
SGCEO43556 ARL2-SNX15-201ENST00000301886 2392 ntAPPRIS P1 TSL 2 BASIC20.89■□□□□ 0.94
SGCEO43556 TMUB1-202ENST00000392818 1563 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.94
SGCEO43556 TMEM120A-214ENST00000493111 1456 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.94
SGCEO43556 TMEM221-201ENST00000341130 1930 ntAPPRIS P1 TSL 2 BASIC20.89■□□□□ 0.93
SGCEO43556 MROH6-210ENST00000533679 1921 ntAPPRIS ALT2 TSL 1 (best) BASIC20.89■□□□□ 0.93
SGCEO43556 PITX1-201ENST00000265340 2406 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.93
SGCEO43556 PTPMT1-205ENST00000534775 1611 ntTSL 1 (best) BASIC20.89■□□□□ 0.93
SGCEO43556 C19orf12-207ENST00000592153 1504 ntTSL 1 (best) BASIC20.88■□□□□ 0.93
SGCEO43556 FCRLB-205ENST00000367948 1977 ntAPPRIS P1 TSL 1 (best) BASIC20.88■□□□□ 0.93
SGCEO43556 RASL10A-201ENST00000216101 1490 ntAPPRIS P1 TSL 1 (best) BASIC20.88■□□□□ 0.93
SGCEO43556 SCARA5-204ENST00000524352 1945 ntTSL 1 (best) BASIC20.88■□□□□ 0.93
SGCEO43556 PDIA6-201ENST00000272227 2338 ntAPPRIS P3 TSL 1 (best) BASIC20.88■□□□□ 0.93
SGCEO43556 HYI-213ENST00000583037 1322 ntTSL 5 BASIC20.88■□□□□ 0.93
SGCEO43556 RRP9-201ENST00000232888 1578 ntAPPRIS P1 TSL 1 (best) BASIC20.88■□□□□ 0.93
SGCEO43556 AQP10-201ENST00000324978 1791 ntAPPRIS P1 TSL 1 (best) BASIC20.87■□□□□ 0.93
SGCEO43556 HOXA4-204ENST00000610970 1728 ntAPPRIS P1 TSL 1 (best) BASIC20.87■□□□□ 0.93
SGCEO43556 LTB4R-202ENST00000396782 1627 ntAPPRIS P1 TSL 1 (best) BASIC20.87■□□□□ 0.93
SGCEO43556 RCCD1-206ENST00000556618 1556 ntAPPRIS P2 TSL 5 BASIC20.87■□□□□ 0.93
SGCEO43556 YWHAH-202ENST00000397492 1879 ntTSL 3 BASIC20.87■□□□□ 0.93
SGCEO43556 RING1-201ENST00000374656 1752 ntAPPRIS P1 TSL 1 (best) BASIC20.87■□□□□ 0.93
SGCEO43556 SSTR4-201ENST00000255008 1427 ntAPPRIS P1 BASIC20.87■□□□□ 0.93
SGCEO43556 SLC39A2-201ENST00000298681 1379 ntAPPRIS P1 TSL 1 (best) BASIC20.86■□□□□ 0.93
SGCEO43556 TRIOBP-203ENST00000403663 2324 ntAPPRIS ALT2 TSL 1 (best) BASIC20.86■□□□□ 0.93
SGCEO43556 NTHL1-201ENST00000219066 1067 ntAPPRIS P1 TSL 1 (best) BASIC20.86■□□□□ 0.93
SGCEO43556 MAZ-202ENST00000322945 2532 ntAPPRIS ALT2 TSL 1 (best) BASIC20.86■□□□□ 0.93
Retrieved 100 of 98,524 protein–RNA pairs in 18.4 ms