Protein–RNA interactions for Protein: Q9ULL8

SHROOM4, Protein Shroom4, humanhuman

Predictions only

Length 1,493 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHROOM4Q9ULL8 RNF165-205ENST00000588679 2904 ntBASIC31.44■■■□□ 2.62
SHROOM4Q9ULL8 ZDHHC18-202ENST00000374142 5020 ntAPPRIS P2 TSL 1 (best) BASIC31.43■■■□□ 2.62
SHROOM4Q9ULL8 B3GNT3-201ENST00000318683 2226 ntAPPRIS P1 TSL 1 (best) BASIC31.43■■■□□ 2.62
SHROOM4Q9ULL8 ANKRD20A5P-207ENST00000581935 2089 ntTSL 2 BASIC31.43■■■□□ 2.62
SHROOM4Q9ULL8 OBSL1-201ENST00000289656 2274 ntTSL 5 BASIC31.43■■■□□ 2.62
SHROOM4Q9ULL8 AC087499.6-201ENST00000411576 835 ntBASIC31.43■■■□□ 2.62
SHROOM4Q9ULL8 HMGB2-203ENST00000446922 1175 ntAPPRIS P1 TSL 1 (best) BASIC31.43■■■□□ 2.62
SHROOM4Q9ULL8 AC091544.3-201ENST00000556424 531 ntTSL 2 BASIC31.43■■■□□ 2.62
SHROOM4Q9ULL8 GABARAPL2-202ENST00000563744 791 ntTSL 1 (best) BASIC31.43■■■□□ 2.62
SHROOM4Q9ULL8 ASAH1-231ENST00000636577 2129 ntTSL 5 BASIC31.43■■■□□ 2.62
SHROOM4Q9ULL8 GFY-201ENST00000576655 1876 ntAPPRIS P1 TSL 5 BASIC31.43■■■□□ 2.62
SHROOM4Q9ULL8 ATP11C-203ENST00000370557 6924 ntAPPRIS ALT2 TSL 5 BASIC31.43■■■□□ 2.62
SHROOM4Q9ULL8 TBC1D2B-202ENST00000409931 6086 ntAPPRIS P3 TSL 1 (best) BASIC31.43■■■□□ 2.62
SHROOM4Q9ULL8 AL021920.2-201ENST00000624828 1351 ntBASIC31.43■■■□□ 2.62
SHROOM4Q9ULL8 GALNT9-202ENST00000397325 1727 ntTSL 1 (best) BASIC31.43■■■□□ 2.62
SHROOM4Q9ULL8 GPR137-212ENST00000539851 1843 ntTSL 2 BASIC31.43■■■□□ 2.62
SHROOM4Q9ULL8 MBOAT1-201ENST00000324607 1794 ntAPPRIS P1 TSL 1 (best) BASIC31.42■■■□□ 2.62
SHROOM4Q9ULL8 AP005329.2-201ENST00000580139 1771 ntTSL 2 BASIC31.42■■■□□ 2.62
SHROOM4Q9ULL8 CBX2-202ENST00000310942 4644 ntAPPRIS P1 TSL 1 (best) BASIC31.42■■■□□ 2.62
SHROOM4Q9ULL8 RAB43-201ENST00000315150 4467 ntAPPRIS P1 TSL 1 (best) BASIC31.42■■■□□ 2.62
SHROOM4Q9ULL8 HCST-201ENST00000246551 613 ntAPPRIS P3 TSL 1 (best) BASIC31.42■■■□□ 2.62
SHROOM4Q9ULL8 AP1S3-202ENST00000396653 589 ntTSL 4 BASIC31.42■■■□□ 2.62
SHROOM4Q9ULL8 RN7SL752P-201ENST00000463779 287 ntBASIC31.42■■■□□ 2.62
SHROOM4Q9ULL8 RAB30-AS1-202ENST00000526795 567 ntTSL 5 BASIC31.42■■■□□ 2.62
SHROOM4Q9ULL8 SHANK1-203ENST00000391813 4785 ntTSL 1 (best) BASIC31.42■■■□□ 2.62
SHROOM4Q9ULL8 CBS-201ENST00000352178 2583 ntAPPRIS P1 TSL 1 (best) BASIC31.42■■■□□ 2.62
SHROOM4Q9ULL8 AC060834.1-201ENST00000443027 2032 ntBASIC31.42■■■□□ 2.62
SHROOM4Q9ULL8 AP3S2-216ENST00000617003 1561 ntBASIC31.42■■■□□ 2.62
SHROOM4Q9ULL8 RABL6-201ENST00000311502 3091 ntAPPRIS P3 TSL 1 (best) BASIC31.42■■■□□ 2.62
SHROOM4Q9ULL8 CDK11A-203ENST00000357760 2446 ntAPPRIS ALT1 TSL 1 (best) BASIC31.42■■■□□ 2.62
SHROOM4Q9ULL8 CDK11A-204ENST00000358779 2419 ntAPPRIS ALT1 TSL 1 (best) BASIC31.42■■■□□ 2.62
SHROOM4Q9ULL8 CDK11A-206ENST00000378638 2429 ntTSL 5 BASIC31.42■■■□□ 2.62
SHROOM4Q9ULL8 CDK11A-208ENST00000404249 2449 ntAPPRIS P4 TSL 1 (best) BASIC31.42■■■□□ 2.62
SHROOM4Q9ULL8 SELENBP1-201ENST00000368868 1752 ntAPPRIS P1 TSL 1 (best) BASIC31.42■■■□□ 2.62
SHROOM4Q9ULL8 SNX33P1-201ENST00000592116 1762 ntBASIC31.42■■■□□ 2.62
SHROOM4Q9ULL8 GYG1-201ENST00000296048 1890 ntAPPRIS P1 TSL 1 (best) BASIC31.42■■■□□ 2.62
SHROOM4Q9ULL8 MAP3K6-207ENST00000493901 4309 ntAPPRIS P1 TSL 5 BASIC31.42■■■□□ 2.62
SHROOM4Q9ULL8 MAPK9-207ENST00000452135 4815 ntAPPRIS P5 TSL 5 BASIC31.42■■■□□ 2.62
SHROOM4Q9ULL8 C8orf33-201ENST00000331434 2677 ntAPPRIS P1 TSL 1 (best) BASIC31.42■■■□□ 2.62
SHROOM4Q9ULL8 PAQR4-202ENST00000318782 2793 ntAPPRIS P1 TSL 1 (best) BASIC31.42■■■□□ 2.62
SHROOM4Q9ULL8 AANAT-201ENST00000250615 1913 ntTSL 1 (best) BASIC31.41■■■□□ 2.62
SHROOM4Q9ULL8 HLA-H-201ENST00000383620 1096 ntBASIC31.41■■■□□ 2.62
SHROOM4Q9ULL8 RHCE-206ENST00000413854 1198 ntTSL 1 (best) BASIC31.41■■■□□ 2.62
SHROOM4Q9ULL8 RN7SL837P-201ENST00000463010 287 ntBASIC31.41■■■□□ 2.62
SHROOM4Q9ULL8 DPF3-210ENST00000556509 1138 ntAPPRIS P1 TSL 1 (best) BASIC31.41■■■□□ 2.62
SHROOM4Q9ULL8 ORC6-206ENST00000568364 888 ntTSL 5 BASIC31.41■■■□□ 2.62
SHROOM4Q9ULL8 PPIF-201ENST00000225174 2190 ntAPPRIS P1 TSL 1 (best) BASIC31.41■■■□□ 2.62
SHROOM4Q9ULL8 CETN4P-206ENST00000642099 2168 ntBASIC31.41■■■□□ 2.62
SHROOM4Q9ULL8 PGAP3-203ENST00000378011 2533 ntTSL 2 BASIC31.41■■■□□ 2.62
SHROOM4Q9ULL8 ECHDC1-214ENST00000474289 2443 ntAPPRIS P3 TSL 5 BASIC31.41■■■□□ 2.62
SHROOM4Q9ULL8 PHF1-201ENST00000374512 2224 ntTSL 1 (best) BASIC31.41■■■□□ 2.62
SHROOM4Q9ULL8 NAT8L-201ENST00000331662 5571 ntTSL 1 (best) BASIC31.41■■■□□ 2.62
SHROOM4Q9ULL8 ESR2-206ENST00000553796 1634 ntTSL 1 (best) BASIC31.41■■■□□ 2.62
SHROOM4Q9ULL8 NQO2-201ENST00000338130 1515 ntAPPRIS P1 TSL 2 BASIC31.41■■■□□ 2.62
SHROOM4Q9ULL8 DTD2-202ENST00000356180 1400 ntAPPRIS P1 TSL 1 (best) BASIC31.41■■■□□ 2.62
SHROOM4Q9ULL8 DMPK-201ENST00000291270 2787 ntAPPRIS P3 TSL 5 BASIC31.41■■■□□ 2.62
SHROOM4Q9ULL8 GDF5-202ENST00000374372 2572 ntAPPRIS P1 TSL 1 (best) BASIC31.41■■■□□ 2.62
SHROOM4Q9ULL8 PRMT2-208ENST00000451211 1878 ntTSL 1 (best) BASIC31.41■■■□□ 2.62
SHROOM4Q9ULL8 AC005332.8-201ENST00000622750 2735 ntBASIC31.41■■■□□ 2.62
SHROOM4Q9ULL8 BCL2L12-203ENST00000441864 1371 ntAPPRIS ALT2 TSL 1 (best) BASIC31.4■■■□□ 2.62
SHROOM4Q9ULL8 TTTY23B-201ENST00000442790 549 ntBASIC31.4■■■□□ 2.62
SHROOM4Q9ULL8 DNAJB6-209ENST00000443280 1159 ntTSL 2 BASIC31.4■■■□□ 2.62
SHROOM4Q9ULL8 AC008115.1-201ENST00000542291 150 ntTSL 1 (best) BASIC31.4■■■□□ 2.62
SHROOM4Q9ULL8 HIST1H3I-201ENST00000616365 411 ntAPPRIS P1 BASIC31.4■■■□□ 2.62
SHROOM4Q9ULL8 TRAF4-201ENST00000262395 2923 ntAPPRIS P1 TSL 1 (best) BASIC31.4■■■□□ 2.62
SHROOM4Q9ULL8 HAS3-205ENST00000569188 2170 ntAPPRIS P1 TSL 2 BASIC31.4■■■□□ 2.62
SHROOM4Q9ULL8 LLGL2-209ENST00000578363 1393 ntTSL 1 (best) BASIC31.4■■■□□ 2.62
SHROOM4Q9ULL8 FAM86MP-201ENST00000340703 885 ntBASIC31.4■■■□□ 2.62
SHROOM4Q9ULL8 Z97055.2-201ENST00000563715 859 ntTSL 3 BASIC31.4■■■□□ 2.62
SHROOM4Q9ULL8 AP005482.1-201ENST00000563722 1273 ntBASIC31.4■■■□□ 2.62
SHROOM4Q9ULL8 C19orf70-204ENST00000587950 655 ntTSL 2 BASIC31.4■■■□□ 2.62
SHROOM4Q9ULL8 AC099568.2-201ENST00000609194 695 ntBASIC31.4■■■□□ 2.62
SHROOM4Q9ULL8 FTCDNL1-204ENST00000622774 1997 ntTSL 1 (best) BASIC31.4■■■□□ 2.62
SHROOM4Q9ULL8 PRMT2-203ENST00000355680 2688 ntAPPRIS P1 TSL 1 (best) BASIC31.39■■■□□ 2.62
SHROOM4Q9ULL8 WASF1-205ENST00000392587 2675 ntAPPRIS P1 TSL 1 (best) BASIC31.39■■■□□ 2.62
SHROOM4Q9ULL8 NOL4L-205ENST00000375678 2042 ntAPPRIS ALT2 TSL 2 BASIC31.39■■■□□ 2.62
SHROOM4Q9ULL8 KCNQ5-212ENST00000628967 3527 ntTSL 2 BASIC31.39■■■□□ 2.62
SHROOM4Q9ULL8 SCNN1A-205ENST00000396966 2336 ntTSL 3 BASIC31.39■■■□□ 2.62
SHROOM4Q9ULL8 PPP1R9B-202ENST00000612501 4167 ntAPPRIS P1 TSL 1 (best) BASIC31.39■■■□□ 2.62
SHROOM4Q9ULL8 PRSS36-207ENST00000569305 2723 ntAPPRIS ALT2 TSL 1 (best) BASIC31.39■■■□□ 2.62
SHROOM4Q9ULL8 SETD7-204ENST00000506866 1602 ntTSL 1 (best) BASIC31.39■■■□□ 2.62
SHROOM4Q9ULL8 BANP-223ENST00000538234 2372 ntAPPRIS P1 TSL 1 (best) BASIC31.39■■■□□ 2.62
SHROOM4Q9ULL8 USP48-201ENST00000308271 4595 ntAPPRIS P1 TSL 1 (best) BASIC31.39■■■□□ 2.62
SHROOM4Q9ULL8 GSTO1-201ENST00000369710 900 ntTSL 2 BASIC31.39■■■□□ 2.62
SHROOM4Q9ULL8 FAM220BP-201ENST00000377689 816 ntBASIC31.39■■■□□ 2.62
SHROOM4Q9ULL8 NDUFA3-204ENST00000391764 267 ntTSL 3 BASIC31.39■■■□□ 2.62
SHROOM4Q9ULL8 SZT2-AS1-201ENST00000396885 699 ntTSL 3 BASIC31.39■■■□□ 2.62
SHROOM4Q9ULL8 FBLN7-204ENST00000409667 1124 ntTSL 1 (best) BASIC31.39■■■□□ 2.62
SHROOM4Q9ULL8 LINC00116-202ENST00000426713 461 ntAPPRIS ALT2 TSL 3 BASIC31.39■■■□□ 2.62
SHROOM4Q9ULL8 PARP8-218ENST00000513738 596 ntTSL 4 BASIC31.39■■■□□ 2.62
SHROOM4Q9ULL8 LINC01184-209ENST00000514573 609 ntTSL 3 BASIC31.39■■■□□ 2.62
SHROOM4Q9ULL8 FUZ-207ENST00000526575 482 ntTSL 4 BASIC31.39■■■□□ 2.62
SHROOM4Q9ULL8 GZMH-203ENST00000557220 520 ntTSL 1 (best) BASIC31.39■■■□□ 2.62
SHROOM4Q9ULL8 AC007431.3-201ENST00000623221 587 ntBASIC31.39■■■□□ 2.62
SHROOM4Q9ULL8 FBXO24-206ENST00000468962 1901 ntTSL 2 BASIC31.39■■■□□ 2.61
SHROOM4Q9ULL8 ZNF846-205ENST00000588267 1943 ntTSL 2 BASIC31.39■■■□□ 2.61
SHROOM4Q9ULL8 PPM1G-201ENST00000344034 2311 ntAPPRIS P1 TSL 1 (best) BASIC31.39■■■□□ 2.61
SHROOM4Q9ULL8 CTSB-202ENST00000353047 3875 ntAPPRIS P1 TSL 1 (best) BASIC31.39■■■□□ 2.61
SHROOM4Q9ULL8 FAM49B-202ENST00000517654 1817 ntAPPRIS P1 TSL 5 BASIC31.38■■■□□ 2.61
SHROOM4Q9ULL8 MAPT-215ENST00000574436 1326 ntAPPRIS ALT2 TSL 5 BASIC31.38■■■□□ 2.61
Retrieved 100 of 98,524 protein–RNA pairs in 52.8 ms